View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9306_low_39 (Length: 250)
Name: NF9306_low_39
Description: NF9306
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9306_low_39 |
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Alignment Details
Target: chr7 (Bit Score: 217; Significance: 1e-119; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 1 - 234
Target Start/End: Complemental strand, 38468519 - 38468284
Alignment:
| Q |
1 |
ccaactatacaattgtaaccaccatttttgcacaatgttagttaaaagagttaggggcgctaatgtggcacgttaaatacactgttgtacacgtgcgtgc |
100 |
Q |
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| T |
38468519 |
ccaactatacaattgtaaccaccatttttgcacaatgttagttaaaagagttaggggcgctaatgtggcacgttaaatacactgctgtacacgtgcgtgc |
38468420 |
T |
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| Q |
101 |
atgcatgccatgttaagtgaattagactaacttgacacaccctcacaatttcattgagcaaattgagattttaatcatcgatattcattcatatgagaaa |
200 |
Q |
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| T |
38468419 |
atgcatgccatgttaagtgaattagactaacttgacacaccctcacaatttcattgagcaaattgagattttaatcattgatattcattcatatgagaaa |
38468320 |
T |
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| Q |
201 |
catgaatattcacaat--actcttacttacaacata |
234 |
Q |
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|||||||||||||||| |||||||||||||||||| |
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| T |
38468319 |
catgaatattcacaatagactcttacttacaacata |
38468284 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 115 - 235
Target Start/End: Complemental strand, 38467648 - 38467526
Alignment:
| Q |
115 |
aagtgaattagactaacttgacacaccctcacaatttcattgagcaaattgagattttaatcatcgatattcattcatatgagaaacatgaatattcaca |
214 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||| ||||||||||||||||||| ||||||||||||||| |
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| T |
38467648 |
aagtgaattagactaacttgacacacccttacaatttcattgagcaaagtgagattttaatcattgatattcattcatatgagagacatgaatattcaca |
38467549 |
T |
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| Q |
215 |
at--actcttacttacaacatag |
235 |
Q |
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|| ||||||||||||||||||| |
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| T |
38467548 |
atagactcttacttacaacatag |
38467526 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 11 - 65
Target Start/End: Complemental strand, 38467861 - 38467807
Alignment:
| Q |
11 |
aattgtaaccaccatttttgcacaatgttagttaaaagagttaggggcgctaatg |
65 |
Q |
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|||| ||||||||| |||||||| ||||||||||||||||||||||||||||||| |
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| T |
38467861 |
aattctaaccaccaattttgcaccatgttagttaaaagagttaggggcgctaatg |
38467807 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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