View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9306_low_43 (Length: 243)

Name: NF9306_low_43
Description: NF9306
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9306_low_43
NF9306_low_43
[»] chr3 (33 HSPs)
chr3 (21-243)||(10501075-10501297)
chr3 (21-242)||(10517987-10518208)
chr3 (21-242)||(11781328-11781549)
chr3 (21-205)||(10089329-10089513)
chr3 (21-205)||(10196212-10196396)
chr3 (21-204)||(9839401-9839584)
chr3 (21-205)||(10363144-10363328)
chr3 (21-204)||(9850279-9850462)
chr3 (21-205)||(10261237-10261421)
chr3 (21-205)||(10032542-10032726)
chr3 (21-205)||(10433390-10433574)
chr3 (21-205)||(10527897-10528081)
chr3 (21-205)||(10664065-10664249)
chr3 (21-204)||(10672222-10672405)
chr3 (21-178)||(10581176-10581333)
chr3 (21-205)||(10127467-10127651)
chr3 (21-205)||(10184781-10184965)
chr3 (21-242)||(13333406-13333627)
chr3 (21-205)||(11769773-11769957)
chr3 (21-143)||(10375191-10375313)
chr3 (21-242)||(13171533-13171754)
chr3 (21-242)||(13344591-13344812)
chr3 (21-205)||(10077808-10077992)
chr3 (21-134)||(10889916-10890029)
chr3 (21-134)||(11159363-11159476)
chr3 (21-207)||(13290202-13290388)
chr3 (21-134)||(11130372-11130485)
chr3 (21-134)||(11245967-11246080)
chr3 (21-207)||(13161517-13161703)
chr3 (21-134)||(8861896-8862009)
chr3 (21-110)||(13854026-13854115)
chr3 (21-134)||(11148200-11148313)
chr3 (21-188)||(13396045-13396212)
[»] chr8 (2 HSPs)
chr8 (21-243)||(11485539-11485761)
chr8 (21-242)||(44957035-44957256)
[»] chr4 (1 HSPs)
chr4 (21-211)||(17852269-17852459)
[»] scaffold0083 (2 HSPs)
scaffold0083 (21-178)||(57757-57914)
scaffold0083 (21-105)||(56948-57032)
[»] scaffold0002 (3 HSPs)
scaffold0002 (21-242)||(145285-145506)
scaffold0002 (21-242)||(153590-153811)
scaffold0002 (21-242)||(135234-135455)
[»] chr2 (1 HSPs)
chr2 (21-205)||(26907436-26907620)
[»] chr7 (1 HSPs)
chr7 (21-203)||(29837181-29837363)
[»] chr6 (1 HSPs)
chr6 (21-136)||(31679079-31679194)
[»] chr1 (1 HSPs)
chr1 (65-123)||(18085804-18085862)


Alignment Details
Target: chr3 (Bit Score: 215; Significance: 1e-118; HSPs: 33)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 21 - 243
Target Start/End: Complemental strand, 10501297 - 10501075
Alignment:
Q  21 cttctgccatccacaacaaaaccaatttcttcctatccagtgtgtaatcttttgggaaaatagaacaataggcaaagcatctttttaaatgagagggaag 120  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10501297 cttctgccatccacaacaaaaccaatttcttcctatccagtgggtaatcttttgggaaaatagaacaataggcaaagcatctttttaaatgagagggaag 10501198  T
Q  121 atattgataactcaaatacaaagtgggcaaaattgtatcatttcttaagttccatatgtcgctattcagaattgcagtccactctttttcaaccgccttt 220  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10501197 atattgataactcaaatacaaagtgggcaaaattgtatcatttcttaagttccatatgtcgctattcagaattgcagtccactctttttcaaccgccttt 10501098  T
Q  221 ggacgcaatagtcctccaagtgc 243  Q
    | |||||||||||||||||||||    
T  10501097 gaacgcaatagtcctccaagtgc 10501075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 21 - 242
Target Start/End: Complemental strand, 10518208 - 10517987
Alignment:
Q  21 cttctgccatccacaacaaaaccaatttcttcctatccagtgtgtaatcttttgggaaaatagaacaataggcaaagcatctttttaaatgagagggaag 120  Q
    |||||||||||||||||||||||||||| ||||| || |||| |||||| ||||| ||||||||||||||||| || |||||||| |||||||| |||||    
T  10518208 cttctgccatccacaacaaaaccaattttttcctctcaagtgggtaatcctttggaaaaatagaacaataggcgaaacatcttttcaaatgagaaggaag 10518109  T
Q  121 atattgataactcaaatacaaagtgggcaaaattgtatcatttcttaagttccatatgtcgctattcagaattgcagtccactctttttcaaccgccttt 220  Q
    ||||||||||||||||| |||||  ||||||||| ||||||||| |||||||||||||| ||| || ||||||| || |||||| ||||||||  |||||    
T  10518108 atattgataactcaaatgcaaagcaggcaaaattttatcatttcgtaagttccatatgttgctgtttagaattgaagaccactccttttcaactaccttt 10518009  T
Q  221 ggacgcaatagtcctccaagtg 242  Q
    | |||||  |||||||||||||    
T  10518008 gaacgcataagtcctccaagtg 10517987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 110; E-Value: 1e-55
Query Start/End: Original strand, 21 - 242
Target Start/End: Original strand, 11781328 - 11781549
Alignment:
Q  21 cttctgccatccacaacaaaaccaatttcttcctatccagtgtgtaatcttttgggaaaatagaacaataggcaaagcatctttttaaatgagagggaag 120  Q
    |||||||||||||||||||||||| ||| ||||| || |||| |||||| ||||| ||||||||||||||||| || |||||||| |||||||| |||||    
T  11781328 cttctgccatccacaacaaaaccagttttttcctctcaagtgggtaatcctttggaaaaatagaacaataggcgaaacatcttttcaaatgagaaggaag 11781427  T
Q  121 atattgataactcaaatacaaagtgggcaaaattgtatcatttcttaagttccatatgtcgctattcagaattgcagtccactctttttcaaccgccttt 220  Q
    ||||||||||||||||| |||||  ||||||| | ||||||||| |||||||||||| | ||| || ||||||| ||||||||| ||||||||  |||||    
T  11781428 atattgataactcaaatgcaaagcaggcaaaactttatcatttcgtaagttccatatattgctgttgagaattgaagtccactccttttcaactaccttt 11781527  T
Q  221 ggacgcaatagtcctccaagtg 242  Q
    | |||||  |||||||||||||    
T  11781528 gaacgcataagtcctccaagtg 11781549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 97; E-Value: 9e-48
Query Start/End: Original strand, 21 - 205
Target Start/End: Complemental strand, 10089513 - 10089329
Alignment:
Q  21 cttctgccatccacaacaaaaccaatttcttcctatccagtgtgtaatcttttgggaaaatagaacaataggcaaagcatctttttaaatgagagggaag 120  Q
    ||||||||||||||||||||||||||| ||||||||| |||| |||||| ||||| ||||| |||||||| ||||| |||||||| |||||| |||||||    
T  10089513 cttctgccatccacaacaaaaccaattgcttcctatcaagtgggtaatcctttggaaaaattgaacaatatgcaaaacatcttttcaaatgacagggaag 10089414  T
Q  121 atattgataactcaaatacaaagtgggcaaaattgtatcatttcttaagttccatatgtcgctattcagaattgcagtccactct 205  Q
    ||||||||||||||||| |||||  || | |||  ||||||||  |||||||||||||||||| |||| ||||| ||||||||||    
T  10089413 atattgataactcaaatgcaaagcaggaagaatattatcatttgataagttccatatgtcgctgttcaaaattgaagtccactct 10089329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 97; E-Value: 9e-48
Query Start/End: Original strand, 21 - 205
Target Start/End: Complemental strand, 10196396 - 10196212
Alignment:
Q  21 cttctgccatccacaacaaaaccaatttcttcctatccagtgtgtaatcttttgggaaaatagaacaataggcaaagcatctttttaaatgagagggaag 120  Q
    ||||||||||||||||||||||||||| ||||||||| |||| |||||| ||||| ||||| |||||||| ||||| |||||||| |||||| |||||||    
T  10196396 cttctgccatccacaacaaaaccaattgcttcctatcaagtgggtaatcctttggaaaaattgaacaatatgcaaaacatcttttcaaatgacagggaag 10196297  T
Q  121 atattgataactcaaatacaaagtgggcaaaattgtatcatttcttaagttccatatgtcgctattcagaattgcagtccactct 205  Q
    ||||||||||||||||| |||||  || | |||  ||||||||  |||||||||||||||||| |||| ||||| ||||||||||    
T  10196296 atattgataactcaaatgcaaagcaggaagaatattatcatttgataagttccatatgtcgctgttcaaaattgaagtccactct 10196212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 21 - 204
Target Start/End: Complemental strand, 9839584 - 9839401
Alignment:
Q  21 cttctgccatccacaacaaaaccaatttcttcctatccagtgtgtaatcttttgggaaaatagaacaataggcaaagcatctttttaaatgagagggaag 120  Q
    ||||||||||||||||||||||||||| ||||||||| |||| | |||| ||||| ||||| |||||||| |||||||||||||| ||||||||||||||    
T  9839584 cttctgccatccacaacaaaaccaattccttcctatcgagtgggcaatcctttggaaaaattgaacaatatgcaaagcatcttttcaaatgagagggaag 9839485  T
Q  121 atattgataactcaaatacaaagtgggcaaaattgtatcatttcttaagttccatatgtcgctattcagaattgcagtccactc 204  Q
    ||||||||||||||||| ||| |  || | |||  ||||||||  |||||||||||||||||| |||| ||||| |||||||||    
T  9839484 atattgataactcaaatgcaatgcaggaagaatattatcatttgataagttccatatgtcgctgttcaaaattgaagtccactc 9839401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 21 - 205
Target Start/End: Original strand, 10363144 - 10363328
Alignment:
Q  21 cttctgccatccacaacaaaaccaatttcttcctatccagtgtgtaatcttttgggaaaatagaacaataggcaaagcatctttttaaatgagagggaag 120  Q
    ||||||||||||||||||||||||||| ||||||||| |||| | |||| ||||| ||||| |||||||| |||||||||||||| || |||||||||||    
T  10363144 cttctgccatccacaacaaaaccaattgcttcctatcgagtgggcaatcctttggaaaaattgaacaatatgcaaagcatcttttcaagtgagagggaag 10363243  T
Q  121 atattgataactcaaatacaaagtgggcaaaattgtatcatttcttaagttccatatgtcgctattcagaattgcagtccactct 205  Q
    ||||||||||||||||| |||||  || | |||  |||||||||  ||||||||||||| ||| |||| ||||| ||||||||||    
T  10363244 atattgataactcaaatgcaaagcaggaagaatattatcatttcgcaagttccatatgttgctgttcaaaattgaagtccactct 10363328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 21 - 204
Target Start/End: Complemental strand, 9850462 - 9850279
Alignment:
Q  21 cttctgccatccacaacaaaaccaatttcttcctatccagtgtgtaatcttttgggaaaatagaacaataggcaaagcatctttttaaatgagagggaag 120  Q
    ||||||||||||||||||||||||||| ||||||||| |||| | |||| ||||| ||||| |||||||| |||||||||||||| ||||||||||||||    
T  9850462 cttctgccatccacaacaaaaccaattgcttcctatcgagtgggcaatcctttggaaaaattgaacaatatgcaaagcatcttttcaaatgagagggaag 9850363  T
Q  121 atattgataactcaaatacaaagtgggcaaaattgtatcatttcttaagttccatatgtcgctattcagaattgcagtccactc 204  Q
    ||||||||||||||||| ||| |  || | |||  ||||||||  ||||||||||||||| || |||| ||||| |||||||||    
T  9850362 atattgataactcaaatgcaatgcaggaagaatattatcatttgataagttccatatgtcactgttcaaaattgaagtccactc 9850279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 21 - 205
Target Start/End: Complemental strand, 10261421 - 10261237
Alignment:
Q  21 cttctgccatccacaacaaaaccaatttcttcctatccagtgtgtaatcttttgggaaaatagaacaataggcaaagcatctttttaaatgagagggaag 120  Q
    ||||||||||||||| |||||||||| ||||||| || ||||  ||||| ||||| ||||| |||||||| ||||| |||||||| ||||||||||||||    
T  10261421 cttctgccatccacagcaaaaccaatgtcttcctttcaagtggataatcctttggaaaaattgaacaatatgcaaaacatcttttcaaatgagagggaag 10261322  T
Q  121 atattgataactcaaatacaaagtgggcaaaattgtatcatttcttaagttccatatgtcgctattcagaattgcagtccactct 205  Q
    ||||||||||||||||| |||||  || | |||  ||||||||  |||||||||||||||||| |||| ||||| ||||||||||    
T  10261321 atattgataactcaaatgcaaagcaggaagaatattatcatttgataagttccatatgtcgctgttcaaaattgaagtccactct 10261237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 21 - 205
Target Start/End: Complemental strand, 10032726 - 10032542
Alignment:
Q  21 cttctgccatccacaacaaaaccaatttcttcctatccagtgtgtaatcttttgggaaaatagaacaataggcaaagcatctttttaaatgagagggaag 120  Q
    ||||||||||||||| |||||||||| ||||||| || ||||  ||||| ||||| ||||| |||||||| ||||| |||||||| ||||||||||||||    
T  10032726 cttctgccatccacagcaaaaccaatgtcttcctttcaagtggataatcctttggaaaaattgaacaatatgcaaaacatcttttcaaatgagagggaag 10032627  T
Q  121 atattgataactcaaatacaaagtgggcaaaattgtatcatttcttaagttccatatgtcgctattcagaattgcagtccactct 205  Q
    ||||||||||||||||| ||| |  || | |||  ||||||||  |||||||||||||||||| |||| ||||| ||||||||||    
T  10032626 atattgataactcaaatgcaatgcaggaagaatattatcatttgataagttccatatgtcgctgttcaaaattgaagtccactct 10032542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 21 - 205
Target Start/End: Original strand, 10433390 - 10433574
Alignment:
Q  21 cttctgccatccacaacaaaaccaatttcttcctatccagtgtgtaatcttttgggaaaatagaacaataggcaaagcatctttttaaatgagagggaag 120  Q
    ||||||||||||||||||||||||||| ||||||||| |||| | |||| ||||| ||||| |||||||| |||||||||||||| ||| ||||||||||    
T  10433390 cttctgccatccacaacaaaaccaattgcttcctatcgagtgggcaatcctttggaaaaattgaacaatatgcaaagcatcttttcaaacgagagggaag 10433489  T
Q  121 atattgataactcaaatacaaagtgggcaaaattgtatcatttcttaagttccatatgtcgctattcagaattgcagtccactct 205  Q
    ||||||||||||||||| ||| |  || | |||  ||||||||  ||||||||||| || ||| |||| ||||| ||||||||||    
T  10433490 atattgataactcaaatgcaatgcaggaagaatattatcatttgataagttccatacgttgctgttcaaaattgaagtccactct 10433574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 21 - 205
Target Start/End: Complemental strand, 10528081 - 10527897
Alignment:
Q  21 cttctgccatccacaacaaaaccaatttcttcctatccagtgtgtaatcttttgggaaaatagaacaataggcaaagcatctttttaaatgagagggaag 120  Q
    |||||||||||||||||||||||||| ||||| |||| |||| | |||| ||||| ||||| |||||||| ||||| |||||||| ||||||||||||||    
T  10528081 cttctgccatccacaacaaaaccaatgtcttcttatcaagtgggaaatcctttggaaaaattgaacaatatgcaaaacatcttttcaaatgagagggaag 10527982  T
Q  121 atattgataactcaaatacaaagtgggcaaaattgtatcatttcttaagttccatatgtcgctattcagaattgcagtccactct 205  Q
    ||||||||||||||||| |||||  || | |||  ||||||||  ||||||||||| || ||| |||| ||||| ||||||||||    
T  10527981 atattgataactcaaatgcaaagcaggaagaatattatcatttgataagttccatacgttgctgttcaaaattgaagtccactct 10527897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 21 - 205
Target Start/End: Complemental strand, 10664249 - 10664065
Alignment:
Q  21 cttctgccatccacaacaaaaccaatttcttcctatccagtgtgtaatcttttgggaaaatagaacaataggcaaagcatctttttaaatgagagggaag 120  Q
    ||||||||||||||||||||||||||| ||||||||| |||| |||||| ||||| ||||| |||||||| ||||| ||||| || ||||||||||||||    
T  10664249 cttctgccatccacaacaaaaccaattgcttcctatcaagtgggtaatcctttggaaaaattgaacaatatgcaaaacatctcttcaaatgagagggaag 10664150  T
Q  121 atattgataactcaaatacaaagtgggcaaaattgtatcatttcttaagttccatatgtcgctattcagaattgcagtccactct 205  Q
    ||||||||||||||||| ||| |  || | |||  ||||||| |  ||||||||||||| ||| |||| ||||| ||||||||||    
T  10664149 atattgataactcaaatgcaatgcaggaagaatattatcattgcgcaagttccatatgttgctgttcaaaattgaagtccactct 10664065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 21 - 204
Target Start/End: Complemental strand, 10672405 - 10672222
Alignment:
Q  21 cttctgccatccacaacaaaaccaatttcttcctatccagtgtgtaatcttttgggaaaatagaacaataggcaaagcatctttttaaatgagagggaag 120  Q
    |||||||||||||||||||||||||| ||||| |||| |||| | |||| ||||| ||||| |||||||| ||||| |||||||| ||||||||||||||    
T  10672405 cttctgccatccacaacaaaaccaatgtcttcttatcaagtgggaaatcctttggaaaaattgaacaatatgcaaaacatcttttcaaatgagagggaag 10672306  T
Q  121 atattgataactcaaatacaaagtgggcaaaattgtatcatttcttaagttccatatgtcgctattcagaattgcagtccactc 204  Q
    ||||||||||||||||| |||||  || | |||  |||||||||  ||||| ||||||| ||| |||| ||||| |||||||||    
T  10672305 atattgataactcaaatgcaaagcaggaagaatattatcatttcgcaagtttcatatgttgctgttcaaaattgaagtccactc 10672222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 21 - 178
Target Start/End: Complemental strand, 10581333 - 10581176
Alignment:
Q  21 cttctgccatccacaacaaaaccaatttcttcctatccagtgtgtaatcttttgggaaaatagaacaataggcaaagcatctttttaaatgagagggaag 120  Q
    ||||||||||||||||||||||||||| ||||||||| |||| | |||| ||||| ||||| |||||||| |||||||||||||| ||||||||||||||    
T  10581333 cttctgccatccacaacaaaaccaattgcttcctatcgagtgggcaatcctttggaaaaattgaacaatatgcaaagcatcttttcaaatgagagggaag 10581234  T
Q  121 atattgataactcaaatacaaagtgggcaaaattgtatcatttcttaagttccatatg 178  Q
    ||||||||||||||||| ||| |  || | |||  |||||||||  ||||||||||||    
T  10581233 atattgataactcaaatgcaatgcaggaagaatattatcatttcgcaagttccatatg 10581176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 21 - 205
Target Start/End: Complemental strand, 10127651 - 10127467
Alignment:
Q  21 cttctgccatccacaacaaaaccaatttcttcctatccagtgtgtaatcttttgggaaaatagaacaataggcaaagcatctttttaaatgagagggaag 120  Q
    |||||||||||||||||||||||||| ||||| |||| |||| | |||| ||||| ||||| |||||||| ||||| |||||||| ||||||||||||||    
T  10127651 cttctgccatccacaacaaaaccaatgtcttcttatcaagtgggaaatcctttggaaaaattgaacaatatgcaaaacatcttttcaaatgagagggaag 10127552  T
Q  121 atattgataactcaaatacaaagtgggcaaaattgtatcatttcttaagttccatatgtcgctattcagaattgcagtccactct 205  Q
    ||||||||||||||||| ||| |  || | |||  |||||||||  ||||||||||||| | | |||| ||||| ||||||||||    
T  10127551 atattgataactcaaatgcaatgcaggaagaatattatcatttcgcaagttccatatgttgttgttcaaaattgaagtccactct 10127467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 21 - 205
Target Start/End: Complemental strand, 10184965 - 10184781
Alignment:
Q  21 cttctgccatccacaacaaaaccaatttcttcctatccagtgtgtaatcttttgggaaaatagaacaataggcaaagcatctttttaaatgagagggaag 120  Q
    ||||||||||||||| |||||||||||||||||| ||  |||||| | | ||||| |||||||||||||| ||||| ||| |||| ||||||||||||||    
T  10184965 cttctgccatccacagcaaaaccaatttcttcctgtcatgtgtgtgaccctttggaaaaatagaacaatatgcaaaacatattttcaaatgagagggaag 10184866  T
Q  121 atattgataactcaaatacaaagtgggcaaaattgtatcatttcttaagttccatatgtcgctattcagaattgcagtccactct 205  Q
    | ||||||||||||||| |||||| || | |||| ||||||||  |||||||||||  | |||||||| |||||  |||||||||    
T  10184865 acattgataactcaaatgcaaagtaggaagaattttatcatttggtaagttccatacattgctattcaaaattgttgtccactct 10184781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 21 - 242
Target Start/End: Complemental strand, 13333627 - 13333406
Alignment:
Q  21 cttctgccatccacaacaaaaccaatttcttcctatccagtgtgtaatcttttgggaaaatagaacaataggcaaagcatctttttaaatgagagggaag 120  Q
    ||||||||||||| ||||||| ||||| |||| | || ||||   |||| || || ||||| || ||||||||||| |||||||| ||||| ||||||||    
T  13333627 cttctgccatccataacaaaatcaattccttcttgtcaagtggaaaatccttcggaaaaattgagcaataggcaaaacatcttttcaaatgtgagggaag 13333528  T
Q  121 atattgataactcaaatacaaagtgggcaaaattgtatcatttcttaagttccatatgtcgctattcagaattgcagtccactctttttcaaccgccttt 220  Q
    |||||||||||| | |  |||||  || |||||||||||||||  ||||||||||||||| ||||| ||||||||||||||||||||| || |  |||||    
T  13333527 atattgataacttagacgcaaagcaggtaaaattgtatcatttggtaagttccatatgtcactatttagaattgcagtccactcttttgcatctaccttt 13333428  T
Q  221 ggacgcaatagtcctccaagtg 242  Q
    | |||||| | |||||| ||||    
T  13333427 gaacgcaaaattcctccgagtg 13333406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 21 - 205
Target Start/End: Complemental strand, 11769957 - 11769773
Alignment:
Q  21 cttctgccatccacaacaaaaccaatttcttcctatccagtgtgtaatcttttgggaaaatagaacaataggcaaagcatctttttaaatgagagggaag 120  Q
    ||||||||||||||||||||| ||||||||||||||| |||| ||| || ||||| ||||| |||||||| ||||| |||||||| || ||||| |||||    
T  11769957 cttctgccatccacaacaaaatcaatttcttcctatcaagtgggtagtcctttggaaaaattgaacaatatgcaaaacatcttttcaagtgagatggaag 11769858  T
Q  121 atattgataactcaaatacaaagtgggcaaaattgtatcatttcttaagttccatatgtcgctattcagaattgcagtccactct 205  Q
    |||||||||||| |||| |||||  || | |||  ||||||||  |||||||||||||||  | || | ||||||||||||||||    
T  11769857 atattgataacttaaatgcaaagcaggaagaatattatcatttgataagttccatatgtcattgtttaaaattgcagtccactct 11769773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 21 - 143
Target Start/End: Original strand, 10375191 - 10375313
Alignment:
Q  21 cttctgccatccacaacaaaaccaatttcttcctatccagtgtgtaatcttttgggaaaatagaacaataggcaaagcatctttttaaatgagagggaag 120  Q
    ||||||||||||||||||||||||||| ||||||||| |||| | |||| || || ||||| |||||||| ||||| |||||||| ||||||||||||||    
T  10375191 cttctgccatccacaacaaaaccaattgcttcctatcaagtgggcaatccttgggaaaaattgaacaatatgcaaaacatcttttcaaatgagagggaag 10375290  T
Q  121 atattgataactcaaatacaaag 143  Q
    ||||||||||||||||| |||||    
T  10375291 atattgataactcaaatgcaaag 10375313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 21 - 242
Target Start/End: Complemental strand, 13171754 - 13171533
Alignment:
Q  21 cttctgccatccacaacaaaaccaatttcttcctatccagtgtgtaatcttttgggaaaatagaacaataggcaaagcatctttttaaatgagagggaag 120  Q
    ||||||||||||| ||||||| ||||| |||| | |||||||   |||| || || ||||| || ||||||||||| |||||||| ||||| ||||||||    
T  13171754 cttctgccatccataacaaaatcaattccttcttgtccagtggaaaatccttcggaaaaattgagcaataggcaaaacatcttttcaaatgtgagggaag 13171655  T
Q  121 atattgataactcaaatacaaagtgggcaaaattgtatcatttcttaagttccatatgtcgctattcagaattgcagtccactctttttcaaccgccttt 220  Q
    |||||||||||| | |  |||||  || |||||  ||||||||  ||||||||||||||| ||||| ||||||||||||||||||||| || |  |||||    
T  13171654 atattgataacttagacgcaaagcaggtaaaatattatcatttggtaagttccatatgtcactatttagaattgcagtccactcttttgcatctaccttt 13171555  T
Q  221 ggacgcaatagtcctccaagtg 242  Q
    | |||||| | |||||| ||||    
T  13171554 gaacgcaaaattcctccgagtg 13171533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 21 - 242
Target Start/End: Complemental strand, 13344812 - 13344591
Alignment:
Q  21 cttctgccatccacaacaaaaccaatttcttcctatccagtgtgtaatcttttgggaaaatagaacaataggcaaagcatctttttaaatgagagggaag 120  Q
    ||||||||||||| ||||||| ||||| |||| | |||||||   |||| ||||| ||||| || ||||||||||| |||||||| ||||| ||||||||    
T  13344812 cttctgccatccataacaaaatcaattccttcttgtccagtggaaaatcctttggaaaaattgagcaataggcaaaacatcttttcaaatgtgagggaag 13344713  T
Q  121 atattgataactcaaatacaaagtgggcaaaattgtatcatttcttaagttccatatgtcgctattcagaattgcagtccactctttttcaaccgccttt 220  Q
    |||||||||||| | |   ||||  || |||||  ||||||||  ||||||||||||||| ||||| ||||||||||||||||||||| || |  |||||    
T  13344712 atattgataacttagacgtaaagcaggtaaaatattatcatttggtaagttccatatgtcactatttagaattgcagtccactcttttgcatctaccttt 13344613  T
Q  221 ggacgcaatagtcctccaagtg 242  Q
    | |||||| | |||||| ||||    
T  13344612 gaacgcaaaattcctccgagtg 13344591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 21 - 205
Target Start/End: Complemental strand, 10077992 - 10077808
Alignment:
Q  21 cttctgccatccacaacaaaaccaatttcttcctatccagtgtgtaatcttttgggaaaatagaacaataggcaaagcatctttttaaatgagagggaag 120  Q
    ||||||||||||||| |||||||||||||||||| || ||||||| | | ||||| ||||| |||||||| ||||| ||| |||| ||||||||||||||    
T  10077992 cttctgccatccacagcaaaaccaatttcttcctgtcaagtgtgtgaccctttggaaaaattgaacaatatgcaaaacatattttcaaatgagagggaag 10077893  T
Q  121 atattgataactcaaatacaaagtgggcaaaattgtatcatttcttaagttccatatgtcgctattcagaattgcagtccactct 205  Q
    | ||||||||||||||| |||||  || | |||| ||||||||  |||||||||||  |  ||||||| |||||  |||||||||    
T  10077892 acattgataactcaaatgcaaagcaggaagaattttatcatttggtaagttccatacattactattcaaaattgttgtccactct 10077808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 21 - 134
Target Start/End: Complemental strand, 10890029 - 10889916
Alignment:
Q  21 cttctgccatccacaacaaaaccaatttcttcctatccagtgtgtaatcttttgggaaaatagaacaataggcaaagcatctttttaaatgagagggaag 120  Q
    ||||||||||||||||||||||||||||||||||||| ||||| || || ||||| ||||| ||||| || | ||| |||||||| || || ||||||||    
T  10890029 cttctgccatccacaacaaaaccaatttcttcctatcaagtgtatagtcctttggaaaaatggaacagtatgaaaaacatcttttcaattgggagggaag 10889930  T
Q  121 atattgataactca 134  Q
    ||||||||||||||    
T  10889929 atattgataactca 10889916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 21 - 134
Target Start/End: Original strand, 11159363 - 11159476
Alignment:
Q  21 cttctgccatccacaacaaaaccaatttcttcctatccagtgtgtaatcttttgggaaaatagaacaataggcaaagcatctttttaaatgagagggaag 120  Q
    ||||||||||||||||||||||||||| ||||||||| ||||| || || ||||| ||||| |||||||| | ||| |||||||| || || ||||||||    
T  11159363 cttctgccatccacaacaaaaccaattgcttcctatcaagtgtatagtcctttggaaaaatggaacaatatgaaaaacatcttttcaattgggagggaag 11159462  T
Q  121 atattgataactca 134  Q
    ||||||||||||||    
T  11159463 atattgataactca 11159476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 21 - 207
Target Start/End: Complemental strand, 13290388 - 13290202
Alignment:
Q  21 cttctgccatccacaacaaaaccaatttcttcctatccagtgtgtaatcttttgggaaaatagaacaataggcaaagcatctttttaaatgagagggaag 120  Q
    ||||||||||||| ||||||| ||||| |||| | || ||||   |||| || || ||||| || ||||||||||| |||||||| ||||| ||||||||    
T  13290388 cttctgccatccataacaaaatcaattccttcttgtcaagtgaaaaatccttcggaaaaattgagcaataggcaaaacatcttttcaaatgtgagggaag 13290289  T
Q  121 atattgataactcaaatacaaagtgggcaaaattgtatcatttcttaagttccatatgtcgctattcagaattgcagtccactcttt 207  Q
    |||||||||||| | |  |||||  || |||||  ||||||||  ||||||||||||||| ||||| ||||||| | ||||||||||    
T  13290288 atattgataacttagacgcaaagcaggtaaaatattatcatttggtaagttccatatgtcactatttagaattgtactccactcttt 13290202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 21 - 134
Target Start/End: Original strand, 11130372 - 11130485
Alignment:
Q  21 cttctgccatccacaacaaaaccaatttcttcctatccagtgtgtaatcttttgggaaaatagaacaataggcaaagcatctttttaaatgagagggaag 120  Q
    ||||||||||||||||||||||||||| ||||||||  ||||| || || ||||| ||||| |||||||| | ||| |||||||| || || ||||||||    
T  11130372 cttctgccatccacaacaaaaccaattgcttcctataaagtgtatagtcctttggaaaaatggaacaatatgaaaaacatcttttcaattgggagggaag 11130471  T
Q  121 atattgataactca 134  Q
    ||||||||||||||    
T  11130472 atattgataactca 11130485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 21 - 134
Target Start/End: Original strand, 11245967 - 11246080
Alignment:
Q  21 cttctgccatccacaacaaaaccaatttcttcctatccagtgtgtaatcttttgggaaaatagaacaataggcaaagcatctttttaaatgagagggaag 120  Q
    ||||||||||||||||||||||||||| ||||||||| ||||  || || || || ||||| |||||||||||||| |||||||| || ||||||| |||    
T  11245967 cttctgccatccacaacaaaaccaattgcttcctatcaagtggatagtccttcggaaaaatcgaacaataggcaaaacatcttttcaattgagaggaaag 11246066  T
Q  121 atattgataactca 134  Q
    ||||||||| ||||    
T  11246067 atattgatagctca 11246080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 21 - 207
Target Start/End: Complemental strand, 13161703 - 13161517
Alignment:
Q  21 cttctgccatccacaacaaaaccaatttcttcctatccagtgtgtaatcttttgggaaaatagaacaataggcaaagcatctttttaaatgagagggaag 120  Q
    ||||||||||||| ||||||| ||||| |||| | || ||||   |||| || || ||||| || ||||||||||| |||||||| ||||| ||||||||    
T  13161703 cttctgccatccataacaaaatcaattccttcttgtcaagtggaaaatccttcggaaaaattgagcaataggcaaaacatcttttcaaatgtgagggaag 13161604  T
Q  121 atattgataactcaaatacaaagtgggcaaaattgtatcatttcttaagttccatatgtcgctattcagaattgcagtccactcttt 207  Q
    |||||||||||| | |  |||||  || |||||   |||||||  ||||||||||||||| ||||| ||||||| | ||||||||||    
T  13161603 atattgataacttagacgcaaagcaggtaaaatatgatcatttggtaagttccatatgtcactatttagaattgtactccactcttt 13161517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 21 - 134
Target Start/End: Complemental strand, 8862009 - 8861896
Alignment:
Q  21 cttctgccatccacaacaaaaccaatttcttcctatccagtgtgtaatcttttgggaaaatagaacaataggcaaagcatctttttaaatgagagggaag 120  Q
    ||||||||||||||||||| ||||||| ||||||||  ||||  || || ||||| ||||| |||||||| | ||| |||||||| || || ||||||||    
T  8862009 cttctgccatccacaacaataccaattgcttcctattaagtgaatagtcctttggaaaaatggaacaatatgaaaaacatcttttcaattgggagggaag 8861910  T
Q  121 atattgataactca 134  Q
    ||||||||||||||    
T  8861909 atattgataactca 8861896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 21 - 110
Target Start/End: Original strand, 13854026 - 13854115
Alignment:
Q  21 cttctgccatccacaacaaaaccaatttcttcctatccagtgtgtaatcttttgggaaaatagaacaataggcaaagcatctttttaaat 110  Q
    ||||||||||||||||||||||||||| ||||||||| |||| ||| || ||||| ||||| |||||||| ||||| |||||||| ||||    
T  13854026 cttctgccatccacaacaaaaccaattgcttcctatcaagtgggtagtcctttggaaaaattgaacaatatgcaaaacatcttttcaaat 13854115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 21 - 134
Target Start/End: Original strand, 11148200 - 11148313
Alignment:
Q  21 cttctgccatccacaacaaaaccaatttcttcctatccagtgtgtaatcttttgggaaaatagaacaataggcaaagcatctttttaaatgagagggaag 120  Q
    ||||||||||||||||||| |||||||  |||||||  ||||  || || ||||| ||||| |||||||| | ||| |||||||| || || ||||||||    
T  11148200 cttctgccatccacaacaataccaattgattcctattaagtgaatagtcctttggaaaaatggaacaatatgaaaaacatcttttcaattgggagggaag 11148299  T
Q  121 atattgataactca 134  Q
    ||||||||||||||    
T  11148300 atattgataactca 11148313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 21 - 188
Target Start/End: Complemental strand, 13396212 - 13396045
Alignment:
Q  21 cttctgccatccacaacaaaaccaatttcttcctatccagtgtgtaatcttttgggaaaatagaacaataggcaaagcatctttttaaatgagagggaag 120  Q
    ||||||||||||||||||||| ||||||||||||||  |  |  ||  | ||||| ||||| || ||||||||||| |||||||| ||||| || |||||    
T  13396212 cttctgccatccacaacaaaatcaatttcttcctattaaagggatagccctttggaaaaatcgagcaataggcaaaacatcttttcaaatgggaaggaag 13396113  T
Q  121 atattgataactcaaatacaaagtgggcaaaattgtatcatttcttaagttccatatgtcgctattca 188  Q
    || ||||||  ||| | ||||||  |||| |||  ||||||||  || |||||||||||| |||||||    
T  13396112 atgttgatatgtcagaaacaaagaaggcataatattatcatttggtatgttccatatgtcactattca 13396045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 135; Significance: 2e-70; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 21 - 243
Target Start/End: Complemental strand, 11485761 - 11485539
Alignment:
Q  21 cttctgccatccacaacaaaaccaatttcttcctatccagtgtgtaatcttttgggaaaatagaacaataggcaaagcatctttttaaatgagagggaag 120  Q
    ||||||||||||||||||||||||||||||||||||| |||| |||||| ||||| ||||| || |||||||| || |||||||||||||||||||||||    
T  11485761 cttctgccatccacaacaaaaccaatttcttcctatcaagtgggtaatcctttggaaaaattgagcaataggcgaaacatctttttaaatgagagggaag 11485662  T
Q  121 atattgataactcaaatacaaagtgggcaaaattgtatcatttcttaagttccatatgtcgctattcagaattgcagtccactctttttcaaccgccttt 220  Q
    ||||||||||||||||| |||||  ||||  |||||||||||| ||||||||||||||||||||| |||||||| ||||||||| ||||||||  |||||    
T  11485661 atattgataactcaaatgcaaagctggcaggattgtatcattttttaagttccatatgtcgctatgcagaattgtagtccactccttttcaactaccttt 11485562  T
Q  221 ggacgcaatagtcctccaagtgc 243  Q
    | | ||| |||||||||||||||    
T  11485561 gaatgcattagtcctccaagtgc 11485539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 102; E-Value: 9e-51
Query Start/End: Original strand, 21 - 242
Target Start/End: Original strand, 44957035 - 44957256
Alignment:
Q  21 cttctgccatccacaacaaaaccaatttcttcctatccagtgtgtaatcttttgggaaaatagaacaataggcaaagcatctttttaaatgagagggaag 120  Q
    ||||||||||||| |||||||||| ||| ||| || | ||   |||| | ||||| ||||||||||||||||| || |||||||| |||||||| |||||    
T  44957035 cttctgccatccataacaaaaccatttttttcttagcaagcaggtaaccctttggaaaaatagaacaataggcgaaacatcttttcaaatgagaaggaag 44957134  T
Q  121 atattgataactcaaatacaaagtgggcaaaattgtatcatttcttaagttccatatgtcgctattcagaattgcagtccactctttttcaaccgccttt 220  Q
    ||||||||||||||||| |||||  ||||||||||||||||||| | ||||||||||||||||||||||||||| ||||||||| ||||||||   ||||    
T  44957135 atattgataactcaaatgcaaagcaggcaaaattgtatcatttcgttagttccatatgtcgctattcagaattgaagtccactccttttcaactatcttt 44957234  T
Q  221 ggacgcaatagtcctccaagtg 242  Q
    | |||||  |||||||| ||||    
T  44957235 gaacgcataagtcctcccagtg 44957256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 99; Significance: 5e-49; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 21 - 211
Target Start/End: Original strand, 17852269 - 17852459
Alignment:
Q  21 cttctgccatccacaacaaaaccaatttcttcctatccagtgtgtaatcttttgggaaaatagaacaataggcaaagcatctttttaaatgagagggaag 120  Q
    ||||||||||||||||||||||||||||||||||||| | || |||||| |||| |||||| |||||||| ||||| ||| |||| |||||||| |||||    
T  17852269 cttctgccatccacaacaaaaccaatttcttcctatcaaatgagtaatcctttgagaaaattgaacaatatgcaaaacatattttcaaatgagacggaag 17852368  T
Q  121 atattgataactcaaatacaaagtgggcaaaattgtatcatttcttaagttccatatgtcgctattcagaattgcagtccactctttttca 211  Q
    ||||||||||||||||| |||||  || | |||| ||||||||  ||| | |||||| |||||||||||||||||||||||||| ||||||    
T  17852369 atattgataactcaaatgcaaagccgggagaattttatcattttgtaattgccatatatcgctattcagaattgcagtccactcattttca 17852459  T

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Target: scaffold0083 (Bit Score: 82; Significance: 8e-39; HSPs: 2)
Name: scaffold0083
Description:

Target: scaffold0083; HSP #1
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 21 - 178
Target Start/End: Original strand, 57757 - 57914
Alignment:
Q  21 cttctgccatccacaacaaaaccaatttcttcctatccagtgtgtaatcttttgggaaaatagaacaataggcaaagcatctttttaaatgagagggaag 120  Q
    ||||||||||||||||||||||||||| |||| |||| |||| | |||| ||||| ||||| |||||||| |||||||||||||| ||||||||||||||    
T  57757 cttctgccatccacaacaaaaccaattgcttcttatcgagtgggcaatcctttggaaaaattgaacaatatgcaaagcatcttttcaaatgagagggaag 57856  T
Q  121 atattgataactcaaatacaaagtgggcaaaattgtatcatttcttaagttccatatg 178  Q
    ||||||||||||||||| |||||  || | |||  |||||||||  ||||||||||||    
T  57857 atattgataactcaaatgcaaagcaggaagaatattatcatttcgcaagttccatatg 57914  T

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Target: scaffold0083; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 21 - 105
Target Start/End: Original strand, 56948 - 57032
Alignment:
Q  21 cttctgccatccacaacaaaaccaatttcttcctatccagtgtgtaatcttttgggaaaatagaacaataggcaaagcatctttt 105  Q
    ||||||||||||||||||||||||||| |||| |||| |||| | |||| ||||| ||||| |||||||| ||||||||||||||    
T  56948 cttctgccatccacaacaaaaccaattgcttcttatcgagtgggcaatcctttggaaaaattgaacaatatgcaaagcatctttt 57032  T

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Target: scaffold0002 (Bit Score: 78; Significance: 2e-36; HSPs: 3)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 21 - 242
Target Start/End: Original strand, 145285 - 145506
Alignment:
Q  21 cttctgccatccacaacaaaaccaatttcttcctatccagtgtgtaatcttttgggaaaatagaacaataggcaaagcatctttttaaatgagagggaag 120  Q
    ||||||||||||| ||||||| ||||| |||| | || ||||   |||| || || ||||| || ||||||||||| |||||||| ||||| ||||||||    
T  145285 cttctgccatccataacaaaatcaattccttcttgtcaagtggaaaatccttcggaaaaattgagcaataggcaaaacatcttttcaaatgtgagggaag 145384  T
Q  121 atattgataactcaaatacaaagtgggcaaaattgtatcatttcttaagttccatatgtcgctattcagaattgcagtccactctttttcaaccgccttt 220  Q
    |||||||||||| | |  |||||  || |||||||||||||||  ||||||||||||||| ||||| ||||||||||||||||||||| || |  |||||    
T  145385 atattgataacttagacgcaaagcaggtaaaattgtatcatttggtaagttccatatgtcactatttagaattgcagtccactcttttgcatctaccttt 145484  T
Q  221 ggacgcaatagtcctccaagtg 242  Q
    | |||||| | |||||| ||||    
T  145485 gaacgcaaaattcctccgagtg 145506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 21 - 242
Target Start/End: Original strand, 153590 - 153811
Alignment:
Q  21 cttctgccatccacaacaaaaccaatttcttcctatccagtgtgtaatcttttgggaaaatagaacaataggcaaagcatctttttaaatgagagggaag 120  Q
    ||||||||||||| ||||||| ||||| |||| | || ||||   |||| || || ||||| || ||||||||||| |||||||| ||||| ||||||||    
T  153590 cttctgccatccataacaaaatcaattccttcttgtcaagtggaaaatccttcggaaaaattgagcaataggcaaaacatcttttcaaatgtgagggaag 153689  T
Q  121 atattgataactcaaatacaaagtgggcaaaattgtatcatttcttaagttccatatgtcgctattcagaattgcagtccactctttttcaaccgccttt 220  Q
    |||||||||||| | |  |||||  || |||||||||||||||  ||||||||||||||| ||||| ||||||||||||||||||||| || |  |||||    
T  153690 atattgataacttagacgcaaagcaggtaaaattgtatcatttggtaagttccatatgtcactatttagaattgcagtccactcttttgcatctaccttt 153789  T
Q  221 ggacgcaatagtcctccaagtg 242  Q
    | |||||| | |||||| ||||    
T  153790 gaacgcaaaattcctccgagtg 153811  T

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Target: scaffold0002; HSP #3
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 21 - 242
Target Start/End: Original strand, 135234 - 135455
Alignment:
Q  21 cttctgccatccacaacaaaaccaatttcttcctatccagtgtgtaatcttttgggaaaatagaacaataggcaaagcatctttttaaatgagagggaag 120  Q
    ||||||||||||| ||||||| ||||| |||| | |||||||   |||| || || ||||| || ||||||||||| |||||||| ||||| ||||||||    
T  135234 cttctgccatccataacaaaatcaattccttcttgtccagtggaaaatccttcggaaaaattgagcaataggcaaaacatcttttcaaatgtgagggaag 135333  T
Q  121 atattgataactcaaatacaaagtgggcaaaattgtatcatttcttaagttccatatgtcgctattcagaattgcagtccactctttttcaaccgccttt 220  Q
    |||||||||||| | |  |||||  || |||||  ||||||||  ||||||||||||||| ||||| ||||||||||||||||||||| || |  |||||    
T  135334 atattgataacttagacgcaaagcaggtaaaatattatcatttggtaagttccatatgtcactatttagaattgcagtccactcttttgcatctaccttt 135433  T
Q  221 ggacgcaatagtcctccaagtg 242  Q
    | |||||| | |||||| ||||    
T  135434 gaacgcaaaattcctccgagtg 135455  T

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Target: chr2 (Bit Score: 77; Significance: 7e-36; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 21 - 205
Target Start/End: Complemental strand, 26907620 - 26907436
Alignment:
Q  21 cttctgccatccacaacaaaaccaatttcttcctatccagtgtgtaatcttttgggaaaatagaacaataggcaaagcatctttttaaatgagagggaag 120  Q
    ||||||||||||||||||| ||||||| ||| ||||| ||||  ||||| ||||| ||||  |||||||| ||||| |||||||| ||||||||||||||    
T  26907620 cttctgccatccacaacaagaccaattgctttctatcaagtggataatcctttggaaaaagtgaacaatatgcaaaacatcttttcaaatgagagggaag 26907521  T
Q  121 atattgataactcaaatacaaagtgggcaaaattgtatcatttcttaagttccatatgtcgctattcagaattgcagtccactct 205  Q
     |||||||||||||||| |||||  || | |||  ||||||||| ||||||||||| |||| | |||| ||||| ||||||||||    
T  26907520 gtattgataactcaaatgcaaagctggaagaatattatcatttcgtaagttccatacgtcgttgttcaaaattgaagtccactct 26907436  T

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Target: chr7 (Bit Score: 75; Significance: 1e-34; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 21 - 203
Target Start/End: Complemental strand, 29837363 - 29837181
Alignment:
Q  21 cttctgccatccacaacaaaaccaatttcttcctatccagtgtgtaatcttttgggaaaatagaacaataggcaaagcatctttttaaatgagagggaag 120  Q
    ||||||||||||||||||||||||||| ||||||||| |||   ||||| ||||| ||||| ||||||||||| || |||||||| || ||| | |||||    
T  29837363 cttctgccatccacaacaaaaccaattgcttcctatcaagttgataatcctttggaaaaattgaacaataggcgaaacatcttttcaagtgacaaggaag 29837264  T
Q  121 atattgataactcaaatacaaagtgggcaaaattgtatcatttcttaagttccatatgtcgctattcagaattgcagtccact 203  Q
    || |||||||||||||| ||| |  ||||  | | ||||||||  ||||||||||||||| ||||||||||||||| ||||||    
T  29837263 atcttgataactcaaatgcaatgcaggcatgactttatcatttgataagttccatatgtcactattcagaattgcattccact 29837181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 52; Significance: 6e-21; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 21 - 136
Target Start/End: Original strand, 31679079 - 31679194
Alignment:
Q  21 cttctgccatccacaacaaaaccaatttcttcctatccagtgtgtaatcttttgggaaaatagaacaataggcaaagcatctttttaaatgagagggaag 120  Q
    |||| |||||||||| |||||||| || ||||||||| || |  ||||| ||||||||||| |||||||| || || ||| |||| |||||||| |||||    
T  31679079 cttcagccatccacagcaaaaccatttgcttcctatcaagaggataatcctttgggaaaattgaacaataagcgaaacatgttttcaaatgagaaggaag 31679178  T
Q  121 atattgataactcaaa 136  Q
    ||||||||||||||||    
T  31679179 atattgataactcaaa 31679194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 65 - 123
Target Start/End: Complemental strand, 18085862 - 18085804
Alignment:
Q  65 taatcttttgggaaaatagaacaataggcaaagcatctttttaaatgagagggaagata 123  Q
    ||||||||||||||||| | |||||| ||||| ||||| ||||||||||| || |||||    
T  18085862 taatcttttgggaaaattgcacaataagcaaaacatctctttaaatgagaagggagata 18085804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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