View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9306_low_45 (Length: 239)

Name: NF9306_low_45
Description: NF9306
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9306_low_45
NF9306_low_45
[»] chr2 (6 HSPs)
chr2 (16-110)||(1887687-1887781)
chr2 (139-239)||(1887809-1887909)
chr2 (139-239)||(41192479-41192579)
chr2 (147-236)||(4616737-4616826)
chr2 (174-239)||(5814632-5814697)
chr2 (139-216)||(34620001-34620078)
[»] chr4 (5 HSPs)
chr4 (147-239)||(52789294-52789386)
chr4 (144-239)||(34939455-34939550)
chr4 (139-239)||(52032779-52032879)
chr4 (144-216)||(47020012-47020084)
chr4 (139-239)||(54703528-54703628)
[»] chr6 (1 HSPs)
chr6 (144-239)||(30634211-30634306)
[»] chr5 (3 HSPs)
chr5 (156-236)||(18172234-18172314)
chr5 (165-216)||(7662272-7662323)
chr5 (180-238)||(40034099-40034157)
[»] chr3 (1 HSPs)
chr3 (139-239)||(53401570-53401668)
[»] chr8 (4 HSPs)
chr8 (144-235)||(42182556-42182647)
chr8 (180-239)||(4759304-4759363)
chr8 (139-239)||(15743285-15743385)
chr8 (139-239)||(35161498-35161598)
[»] chr1 (3 HSPs)
chr1 (139-239)||(10308364-10308464)
chr1 (144-216)||(15399016-15399088)
chr1 (139-239)||(33686640-33686740)
[»] chr7 (2 HSPs)
chr7 (139-239)||(4035248-4035348)
chr7 (144-239)||(39283885-39283980)


Alignment Details
Target: chr2 (Bit Score: 95; Significance: 1e-46; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 16 - 110
Target Start/End: Original strand, 1887687 - 1887781
Alignment:
Q  16 atttttctctttaacttgtcataaaattaattcaaaaagtacgatactattttctcctttcgaaattgtggatgttaataaagctggaagagatg 110  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1887687 atttttctctttaacttgtcataaaattaattcaaaaagtacgatactattttctcctttcgaaattgtggatgttaataaagctggaagagatg 1887781  T

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Target: chr2; HSP #2
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 139 - 239
Target Start/End: Original strand, 1887809 - 1887909
Alignment:
Q  139 ttctcctcttcacccaacacatttcgctcgggccttgcacatttttcaaatatgatcttgcatgagttaagtcacgcaacgtcacttaacacacgcacct 238  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  1887809 ttctcctcttcacccaacacatttcgctcgagccttgcacatttttcaaatatgatcttgcgtgagttaagtcacgcaacgtcacttaacacacgcacct 1887908  T
Q  239 c 239  Q
    |    
T  1887909 c 1887909  T

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Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 139 - 239
Target Start/End: Complemental strand, 41192579 - 41192479
Alignment:
Q  139 ttctcctcttcacccaacacatttcgctcgggccttgcacatttttcaaatatgatcttgcatgagttaagtcacgcaacgtcacttaacacacgcacct 238  Q
    |||| ||||||||||  ||||||| | ||| ||| ||||| |||| ||||||| | | ||| |||||||||||||||| ||  ||||||| |||||||||    
T  41192579 ttctgctcttcaccctgcacattttgttcgcgccctgcactttttccaaatataaccctgcgtgagttaagtcacgcagcgagacttaactcacgcacct 41192480  T
Q  239 c 239  Q
    |    
T  41192479 c 41192479  T

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Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 147 - 236
Target Start/End: Complemental strand, 4616826 - 4616737
Alignment:
Q  147 ttcacccaacacatttcgctcgggccttgcacatttttcaaatatgatcttgcatgagttaagtcacgcaacgtcacttaacacacgcac 236  Q
    |||||||| ||||||||||||| ||| ||||  |||||||||||| | | ||  |||||||||||||||   || ||||||| |||||||    
T  4616826 ttcacccagcacatttcgctcgcgccctgcatgtttttcaaatataaccatgtgtgagttaagtcacgctgtgtgacttaactcacgcac 4616737  T

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Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 174 - 239
Target Start/End: Complemental strand, 5814697 - 5814632
Alignment:
Q  174 tgcacatttttcaaatatgatcttgcatgagttaagtcacgcaacgtcacttaacacacgcacctc 239  Q
    ||||| |||||||||||| | | ||| |||||||||||||||| ||  ||||||| ||||||||||    
T  5814697 tgcacttttttcaaatataaccctgcgtgagttaagtcacgcagcgagacttaactcacgcacctc 5814632  T

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Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 139 - 216
Target Start/End: Complemental strand, 34620078 - 34620001
Alignment:
Q  139 ttctcctcttcacccaacacatttcgctcgggccttgcacatttttcaaatatgatcttgcatgagttaagtcacgca 216  Q
    |||| ||||||||||  ||||||| ||||| ||| ||||| |||| ||||||| | | ||| ||||||||||||||||    
T  34620078 ttctgctcttcaccctgcacattttgctcgcgccctgcactttttccaaatataaccctgcgtgagttaagtcacgca 34620001  T

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Target: chr4 (Bit Score: 57; Significance: 6e-24; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 147 - 239
Target Start/End: Original strand, 52789294 - 52789386
Alignment:
Q  147 ttcacccaacacatttcgctcgggccttgcacatttttcaaatatgatcttgcatgagttaagtcacgcaacgtcacttaacacacgcacctc 239  Q
    ||||||||  |||||||||||| ||| ||||||||||| |||||||||||||| |||||||||||| | | ||||||||||||||||||||||    
T  52789294 ttcacccagaacatttcgctcgcgccctgcacattttttaaatatgatcttgcgtgagttaagtcaagtagcgtcacttaacacacgcacctc 52789386  T

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Target: chr4; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 144 - 239
Target Start/End: Complemental strand, 34939550 - 34939455
Alignment:
Q  144 ctcttcacccaacacatttcgctcgggccttgcacatttttcaaatatgatcttgcatgagttaagtcacgcaacgtcacttaacacacgcacctc 239  Q
    |||||||| || ||||||||||||| ||| ||||   ||||||||||||| | ||| |||||||||||||| | ||| ||||||||||||||||||    
T  34939550 ctcttcactcagcacatttcgctcgcgccctgcatgattttcaaatatgaccctgcgtgagttaagtcacgtagcgtgacttaacacacgcacctc 34939455  T

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Target: chr4; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 139 - 239
Target Start/End: Complemental strand, 52032879 - 52032779
Alignment:
Q  139 ttctcctcttcacccaacacatttcgctcgggccttgcacatttttcaaatatgatcttgcatgagttaagtcacgcaacgtcacttaacacacgcacct 238  Q
    |||| ||||||||||  |||||||  |||| ||||||||| |||||||||| ||| | ||| |||||||||||||||| ||  ||||||| |||||||||    
T  52032879 ttctgctcttcaccctgcacattttactcgcgccttgcacttttttcaaatttgaccctgcgtgagttaagtcacgcagcgagacttaactcacgcacct 52032780  T
Q  239 c 239  Q
    |    
T  52032779 c 52032779  T

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Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 144 - 216
Target Start/End: Original strand, 47020012 - 47020084
Alignment:
Q  144 ctcttcacccaacacatttcgctcgggccttgcacatttttcaaatatgatcttgcatgagttaagtcacgca 216  Q
    ||||||||||| ||||||||||||| ||| ||||  |||| ||||||| | ||||| ||||||||||||||||    
T  47020012 ctcttcacccagcacatttcgctcgcgccctgcatgttttccaaatataaccttgcgtgagttaagtcacgca 47020084  T

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Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 139 - 239
Target Start/End: Original strand, 54703528 - 54703628
Alignment:
Q  139 ttctcctcttcacccaacacatttcgctcgggccttgcacatttttcaaatatgatcttgcatgagttaagtcacgcaacgtcacttaacacacgcacct 238  Q
    |||| ||||||||||  ||||||| ||||| ||| ||||| |||||||||||| | | ||| |||||||||| ||||| ||  |||||||| ||||||||    
T  54703528 ttctgctcttcaccctgcacattttgctcgcgccctgcacttttttcaaatataaccctgcgtgagttaagtaacgcagcgagacttaacatacgcacct 54703627  T
Q  239 c 239  Q
    |    
T  54703628 c 54703628  T

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Target: chr6 (Bit Score: 48; Significance: 1e-18; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 144 - 239
Target Start/End: Complemental strand, 30634306 - 30634211
Alignment:
Q  144 ctcttcacccaacacatttcgctcgggccttgcacatttttcaaatatgatcttgcatgagttaagtcacgcaacgtcacttaacacacgcacctc 239  Q
    |||||||||||| |||||||||||| ||| |||||||||| ||||||| | | ||| |||||||||||||||| ||  ||||||| ||||||||||    
T  30634306 ctcttcacccaatacatttcgctcgcgccctgcacattttccaaatataaccctgcgtgagttaagtcacgcagcgagacttaactcacgcacctc 30634211  T

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Target: chr5 (Bit Score: 45; Significance: 9e-17; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 156 - 236
Target Start/End: Complemental strand, 18172314 - 18172234
Alignment:
Q  156 cacatttcgctcgggccttgcacatttttcaaatatgatcttgcatgagttaagtcacgcaacgtcacttaacacacgcac 236  Q
    ||||||| | ||| ||| ||||||||||| |||||||| ||||| ||||||||||||||||  ||||||||||||||||||    
T  18172314 cacattttgttcgcgccctgcacattttttaaatatgaccttgcgtgagttaagtcacgcagtgtcacttaacacacgcac 18172234  T

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Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 165 - 216
Target Start/End: Complemental strand, 7662323 - 7662272
Alignment:
Q  165 ctcgggccttgcacatttttcaaatatgatcttgcatgagttaagtcacgca 216  Q
    |||| ||| |||||||||||||||||||| ||||| ||||||||||||||||    
T  7662323 ctcgcgccctgcacatttttcaaatatgaccttgcgtgagttaagtcacgca 7662272  T

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Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 180 - 238
Target Start/End: Complemental strand, 40034157 - 40034099
Alignment:
Q  180 tttttcaaatatgatcttgcatgagttaagtcacgcaacgtcacttaacacacgcacct 238  Q
    |||||||||||| | | |||||||||||||||||||| ||| ||||||| || ||||||    
T  40034157 tttttcaaatataaccctgcatgagttaagtcacgcatcgtgacttaactcatgcacct 40034099  T

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Target: chr3 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 139 - 239
Target Start/End: Complemental strand, 53401668 - 53401570
Alignment:
Q  139 ttctcctcttcacccaacacatttcgctcgggccttgcacatttttcaaatatgatcttgcatgagttaagtcacgcaacgtcacttaacacacgcacct 238  Q
    ||||||||||||||| |||||||||||||| ||| ||||| |||||||||| ||| | ||| |||||||||| ||||| ||  ||||||| |||||||||    
T  53401668 ttctcctcttcaccctacacatttcgctcgcgcc-tgcacttttttcaaatttga-cctgcgtgagttaagttacgcagcgagacttaactcacgcacct 53401571  T

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Target: chr8 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 144 - 235
Target Start/End: Original strand, 42182556 - 42182647
Alignment:
Q  144 ctcttcacccaacacatttcgctcgggccttgcacatttttcaaatatgatcttgcatgagttaagtcacgcaacgtcacttaacacacgca 235  Q
    ||||||||||||||||||||||||| ||| ||||  |||| ||||||| ||| ||| ||||||||||||| |  ||| ||||||| ||||||    
T  42182556 ctcttcacccaacacatttcgctcgcgccctgcatgttttccaaatataatcctgcgtgagttaagtcacactgcgtgacttaactcacgca 42182647  T

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Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 180 - 239
Target Start/End: Complemental strand, 4759363 - 4759304
Alignment:
Q  180 tttttcaaatatgatcttgcatgagttaagtcacgcaacgtcacttaacacacgcacctc 239  Q
    |||||||||||| | | ||| | |||||||||||||||||| ||||||||||||||||||    
T  4759363 tttttcaaatataaccctgcgtaagttaagtcacgcaacgtgacttaacacacgcacctc 4759304  T

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Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 139 - 239
Target Start/End: Complemental strand, 15743385 - 15743285
Alignment:
Q  139 ttctcctcttcacccaacacatttcgctcgggccttgcacatttttcaaatatgatcttgcatgagttaagtcacgcaacgtcacttaacacacgcacct 238  Q
    |||| ||||||||||  ||||||| ||||| ||| ||||| |||| ||||||| ||| ||  |||||||||||||||| |   ||||||| |||||||||    
T  15743385 ttctgctcttcaccctgcacattttgctcgcgccctgcactttttccaaatataatcctgtgtgagttaagtcacgcagcaagacttaactcacgcacct 15743286  T
Q  239 c 239  Q
    |    
T  15743285 c 15743285  T

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Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 139 - 239
Target Start/End: Original strand, 35161498 - 35161598
Alignment:
Q  139 ttctcctcttcacccaacacatttcgctcgggccttgcacatttttcaaatatgatcttgcatgagttaagtcacgcaacgtcacttaacacacgcacct 238  Q
    |||| ||||||||||  ||||||| ||||| ||| ||||| ||||| |||||| | | ||| |||||||||||| ||| ||  ||||||||||| |||||    
T  35161498 ttctactcttcaccctgcacattttgctcgcgccctgcactttttttaaatataaccatgcgtgagttaagtcatgcagcgagacttaacacacccacct 35161597  T
Q  239 c 239  Q
    |    
T  35161598 c 35161598  T

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Target: chr1 (Bit Score: 37; Significance: 0.000000000005; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 139 - 239
Target Start/End: Original strand, 10308364 - 10308464
Alignment:
Q  139 ttctcctcttcacccaacacatttcgctcgggccttgcacatttttcaaatatgatcttgcatgagttaagtcacgcaacgtcacttaacacacgcacct 238  Q
    |||| ||||||||||  ||||||| ||||| ||| ||||||||||  |||||| | | ||| |||||||||||||||| ||  ||||||| |||||||||    
T  10308364 ttctgctcttcaccctgcacattttgctcgcgccctgcacattttctaaatataaccctgcgtgagttaagtcacgcagcgagacttaactcacgcacct 10308463  T
Q  239 c 239  Q
    |    
T  10308464 c 10308464  T

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Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 144 - 216
Target Start/End: Original strand, 15399016 - 15399088
Alignment:
Q  144 ctcttcacccaacacatttcgctcgggccttgcacatttttcaaatatgatcttgcatgagttaagtcacgca 216  Q
    ||||||||||| ||||||||||||  ||| ||||  |||||||||||| ||| ||| ||||||||||||||||    
T  15399016 ctcttcacccagcacatttcgctcacgccctgcatgtttttcaaatataatcctgcgtgagttaagtcacgca 15399088  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 139 - 239
Target Start/End: Complemental strand, 33686740 - 33686640
Alignment:
Q  139 ttctcctcttcacccaacacatttcgctcgggccttgcacatttttcaaatatgatcttgcatgagttaagtcacgcaacgtcacttaacacacgcacct 238  Q
    |||| ||||||| ||  ||||||| ||||| | | ||||| |||| ||||||| ||  ||| |||||||||||||||| ||  ||||||| |||||||||    
T  33686740 ttctgctcttcatcctgcacattttgctcgcgtcctgcactttttccaaatataattctgcgtgagttaagtcacgcagcgagacttaactcacgcacct 33686641  T
Q  239 c 239  Q
    |    
T  33686640 c 33686640  T

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Target: chr7 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 139 - 239
Target Start/End: Complemental strand, 4035348 - 4035248
Alignment:
Q  139 ttctcctcttcacccaacacatttcgctcgggccttgcacatttttcaaatatgatcttgcatgagttaagtcacgcaacgtcacttaacacacgcacct 238  Q
    |||| ||||||||||  ||||||| ||||| ||| | ||| |||||||||||| | | ||| |||||||||||||||| ||  ||||||| || ||||||    
T  4035348 ttctgctcttcaccctgcacattttgctcgcgccctacacttttttcaaatataaccctgcgtgagttaagtcacgcagcgagacttaactcatgcacct 4035249  T
Q  239 c 239  Q
    |    
T  4035248 c 4035248  T

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Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 144 - 239
Target Start/End: Original strand, 39283885 - 39283980
Alignment:
Q  144 ctcttcacccaacacatttcgctcgggccttgcacatttttcaaatatgatcttgcatgagttaagtcacgcaacgtcacttaacacacgcacctc 239  Q
    ||||||||||| ||||||||||| | ||| ||||  ||||  |||||| | | ||| |||||||||||||||| |||  |||||| ||||||||||    
T  39283885 ctcttcacccagcacatttcgcttgcgccctgcatgttttcaaaatataaccatgcgtgagttaagtcacgcagcgtggcttaactcacgcacctc 39283980  T

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