View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9306_low_5 (Length: 501)
Name: NF9306_low_5
Description: NF9306
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9306_low_5 |
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Alignment Details
Target: chr2 (Bit Score: 449; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 449; E-Value: 0
Query Start/End: Original strand, 10 - 490
Target Start/End: Complemental strand, 4352441 - 4351962
Alignment:
| Q |
10 |
attattcttccaaactcctatgaaaatgactatgtaatgaccaaaaatggcaagttgaactcacattaacatctctagctttcaagttctttggctttac |
109 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4352441 |
attattcttccaaactcctatgaaaatgactatgtaatgaccaaaaatggcaagttgaactcacattaacatctctagctttcaagttctttggctttac |
4352342 |
T |
|
| Q |
110 |
caagttaggattttcaatctcaataatcccttgagttccttttttcttctgtataaattaagtagcagcaagacagtcaatttcatattgatagaagtag |
209 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
4352341 |
caagttaggattttcaatctcaataatcccttgagttccttttttcttctgtataaattaagtagcagcaagacagtcaatttcatattgatagaagcag |
4352242 |
T |
|
| Q |
210 |
accatagaaacaaataaatagttttgttttcctcaaaaaatgcaaatattgtgagatactaactttagtttcttgatcagactcttctccagattcatcc |
309 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4352241 |
accatagaaacaaataaaaagttttgttttcctcaaaaaatgcaaatattgtgagatactaactttagtttcttgatcagactcttctccagattcatcc |
4352142 |
T |
|
| Q |
310 |
ccggatacttcctcgggctcctcttcattctcagcttctttctaataaggttgtgaagagaatgaccatgtaaaatacagttaaacgtgtaaagaaaatg |
409 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4352141 |
ccggatacttcctcgggctcctcttcattctcagcttctttctattaaggttgtgaagagaatgaccatgtaaaatacagttaaacgtgtaaagaaaatg |
4352042 |
T |
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| Q |
410 |
gaaaacaacttattatgtccatataaaaaattaattgtcactatagtagataatgtaaacaaaagcatcctgtgtgtaagt |
490 |
Q |
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| T |
4352041 |
aaaaacaacttattatgtccatata-aaaattaattgtcactatagatgataatgtaaacaaaagcatcctgtgtgtaagt |
4351962 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 46; Significance: 5e-17; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 52 - 169
Target Start/End: Original strand, 34714031 - 34714148
Alignment:
| Q |
52 |
aaaaatggcaagttgaactcacattaacatctctagctttcaagttctttggctttaccaagttaggattttcaatctcaataatcccttgagttccttt |
151 |
Q |
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|||||||| ||| ||||||||| | || ||||||||||| | |||||| ||||||||||||||||| |||||||||||||||| |||||| ||||| |
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| T |
34714031 |
aaaaatggtaagatgaactcacgtcaatgtctctagctttaatgttcttgggctttaccaagttagggttttcaatctcaataactccttgaacaccttt |
34714130 |
T |
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| Q |
152 |
tttcttctgtataaatta |
169 |
Q |
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| T |
34714131 |
tgtcttctgcagaaatta |
34714148 |
T |
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