View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9306_low_50 (Length: 237)
Name: NF9306_low_50
Description: NF9306
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9306_low_50 |
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Alignment Details
Target: chr8 (Bit Score: 199; Significance: 1e-108; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 45160060 - 45159839
Alignment:
| Q |
1 |
caagccttaaatactcaaactgcgatgacttgtcttttgttttaaggaagggatacaaatacaaaggtatgctagctgcaaacaagaaaatgtaagcgta |
100 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
45160060 |
caagccttaaatactcaaactgcggtgacttgtcttttgttttaaggaagggatacaaatacaaaggtatgctagctgcaaacaagaaaatgtaagtgta |
45159961 |
T |
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| Q |
101 |
aataatggaaagacgaatgtattttttcttcttcatatattgtctattaatgagcaaaatcaaggatgagataatgtaaaagcaatcccctggattatat |
200 |
Q |
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||||||||||||||||||||||||||| ||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45159960 |
aataatggaaagacgaatgtatttttt-ttcttcaaatattgtcttttaatgagcaaaatcaaggatgagataatgtaaaagcaatcccctggattatat |
45159862 |
T |
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| Q |
201 |
tttgtatttaaaaaagaagtaat |
223 |
Q |
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||||||||||||||||||||||| |
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| T |
45159861 |
tttgtatttaaaaaagaagtaat |
45159839 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 79; Significance: 5e-37; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 5 - 107
Target Start/End: Original strand, 24128374 - 24128476
Alignment:
| Q |
5 |
ccttaaatactcaaactgcgatgacttgtcttttgttttaaggaagggatacaaatacaaaggtatgctagctgcaaacaagaaaatgtaagcgtaaata |
104 |
Q |
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|||||||||||||||||| | |||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||| |
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| T |
24128374 |
ccttaaatactcaaactgtggtgacttttcttttgttttaaggaagggatacaaatacaaaggcatgctagctgcaaacaagaaaatgtaagtttaaata |
24128473 |
T |
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| Q |
105 |
atg |
107 |
Q |
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||| |
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| T |
24128474 |
atg |
24128476 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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