View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9306_low_52 (Length: 227)
Name: NF9306_low_52
Description: NF9306
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9306_low_52 |
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Alignment Details
Target: chr4 (Bit Score: 167; Significance: 1e-89; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 167; E-Value: 1e-89
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 23601092 - 23600870
Alignment:
| Q |
1 |
acaacttactgtctctgctacgatcttttacttgatgttgcacttgtccgtaacaatttatgttggaattctacatggaagatgcaaattactccttgag |
100 |
Q |
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| T |
23601092 |
acaacttattgtctctgctccgatctttttcttgatgttgcacttgtctataacaatttacgttggaattctacatggaagatgcaaattactccttgag |
23600993 |
T |
|
| Q |
101 |
tacattcctttatatggtggttagctcatcaatgtttaccaacccatgcaaatctcaccagccacaacatcccttgtgctgattcttgtgtttgttgtga |
200 |
Q |
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||| ||||||||||||||| |||||||||||||||||||| ||||||||||||||||||| |||| |||||||||||||| ||||||||||||||||||| |
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| T |
23600992 |
tacgttcctttatatggtgattagctcatcaatgtttacctacccatgcaaatctcaccaaccacgacatcccttgtgctaattcttgtgtttgttgtga |
23600893 |
T |
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| Q |
201 |
cctcttggctgaaatgcatatgc |
223 |
Q |
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|||||||||||||| ||||||| |
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| T |
23600892 |
cctcttggctgaaacacatatgc |
23600870 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 115; Significance: 1e-58; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 115; E-Value: 1e-58
Query Start/End: Original strand, 5 - 223
Target Start/End: Complemental strand, 6353372 - 6353154
Alignment:
| Q |
5 |
cttactgtctctgctacgatcttttacttgatgttgcacttgtccgtaacaatttatgttggaattctacatggaagatgcaaattactccttgagtaca |
104 |
Q |
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||||| ||||||||| || |||||||||||||| ||||| ||||||||||||||| || |||||||||| || | ||||||||||| ||||| ||| | |
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| T |
6353372 |
cttaccgtctctgctccggtcttttacttgatgctgcacctgtccgtaacaatttctgctggaattctatatagtagatgcaaattcctcctcaagtgcg |
6353273 |
T |
|
| Q |
105 |
ttcctttatatggtggttagctcatcaatgtttaccaacccatgcaaatctcaccagccacaacatcccttgtgctgattcttgtgtttgttgtgacctc |
204 |
Q |
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||||||||| ||| |||||||||||||||||||||| |||| ||||||||||| ||||| | |||| |||||||||||||||||||||||||||||||| |
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| T |
6353272 |
ttcctttatctggcggttagctcatcaatgtttacctacccgtgcaaatctcatcagccgcggcatctcttgtgctgattcttgtgtttgttgtgacctc |
6353173 |
T |
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| Q |
205 |
ttggctgaaatgcatatgc |
223 |
Q |
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|||||||||| ||||||| |
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| T |
6353172 |
ttggctgaaacacatatgc |
6353154 |
T |
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