View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9306_low_53 (Length: 227)

Name: NF9306_low_53
Description: NF9306
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9306_low_53
NF9306_low_53
[»] chr3 (40 HSPs)
chr3 (1-227)||(10500856-10501082)
chr3 (7-215)||(11781555-11781763)
chr3 (7-227)||(10517773-10517993)
chr3 (7-122)||(10433710-10433825)
chr3 (7-224)||(13333192-13333409)
chr3 (7-224)||(13344377-13344594)
chr3 (7-122)||(10077557-10077672)
chr3 (7-213)||(13171319-13171525)
chr3 (7-215)||(13161268-13161476)
chr3 (7-215)||(13289953-13290161)
chr3 (16-227)||(8861583-8861794)
chr3 (7-122)||(9850027-9850142)
chr3 (7-122)||(10032291-10032406)
chr3 (7-122)||(10663814-10663929)
chr3 (16-227)||(11130587-11130798)
chr3 (16-227)||(11148415-11148626)
chr3 (7-122)||(9839149-9839264)
chr3 (7-122)||(10089078-10089193)
chr3 (7-122)||(10195961-10196076)
chr3 (7-122)||(11769522-11769637)
chr3 (7-120)||(10363466-10363579)
chr3 (16-125)||(11159680-11159789)
chr3 (7-122)||(10260986-10261101)
chr3 (7-215)||(10375418-10375626)
chr3 (7-122)||(10127216-10127331)
chr3 (7-122)||(10527646-10527761)
chr3 (16-227)||(10889603-10889814)
chr3 (172-227)||(10032456-10032511)
chr3 (7-122)||(10184530-10184645)
chr3 (172-227)||(10261151-10261206)
chr3 (163-224)||(10581045-10581106)
chr3 (163-215)||(9839305-9839357)
chr3 (163-215)||(9850183-9850235)
chr3 (163-215)||(10077713-10077765)
chr3 (172-224)||(10127381-10127433)
chr3 (163-215)||(10184686-10184738)
chr3 (172-215)||(10663979-10664022)
chr3 (172-215)||(10672135-10672178)
chr3 (163-224)||(10363362-10363423)
chr3 (179-227)||(11159578-11159626)
[»] chr8 (2 HSPs)
chr8 (2-227)||(11485321-11485546)
chr8 (13-224)||(44957253-44957463)
[»] chr4 (1 HSPs)
chr4 (13-224)||(17852487-17852698)
[»] scaffold0002 (3 HSPs)
scaffold0002 (7-224)||(145503-145720)
scaffold0002 (7-224)||(153808-154025)
scaffold0002 (7-213)||(135463-135669)
[»] chr2 (2 HSPs)
chr2 (7-122)||(26907185-26907300)
chr2 (163-224)||(26907341-26907402)
[»] chr6 (1 HSPs)
chr6 (55-227)||(31679294-31679466)
[»] chr1 (2 HSPs)
chr1 (7-125)||(826199-826317)
chr1 (147-215)||(826330-826398)
[»] scaffold0083 (1 HSPs)
scaffold0083 (163-224)||(57984-58045)


Alignment Details
Target: chr3 (Bit Score: 227; Significance: 1e-125; HSPs: 40)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 1 - 227
Target Start/End: Original strand, 10500856 - 10501082
Alignment:
Q  1 ggcaaagtgataataacaacacgcgaacaaaaagttgcagaggtcgcatgcacatttcctattcataaattagaacctctatctgatgatgattgttgga 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10500856 ggcaaagtgataataacaacacgcgaacaaaaagttgcagaggtcgcatgcacatttcctattcataaattagaacctctatctgatgatgattgttgga 10500955  T
Q  101 ctttactctcgaagcatgcatttggtgatgaagactatgttcgtggtaaatacccaaagctagaagagattggcaggaagattgctagaaagtgtggtgg 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10500956 ctttactctcgaagcatgcatttggtgatgaagactatgttcgtggtaaatacccaaagctagaagagattggcaggaagattgctagaaagtgtggtgg 10501055  T
Q  201 attgccgatagctgcaaaagcacttgg 227  Q
    |||||||||||||||||||||||||||    
T  10501056 attgccgatagctgcaaaagcacttgg 10501082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 7 - 215
Target Start/End: Complemental strand, 11781763 - 11781555
Alignment:
Q  7 gtgataataacaacacgcgaacaaaaagttgcagaggtcgcatgcacatttcctattcataaattagaacctctatctgatgatgattgttggactttac 106  Q
    ||||| |||||||| ||| ||||||||||||||||||| |||  ||||||||||||||||  |||||||||||||||| |||| ||||||||| ||||||    
T  11781763 gtgattataacaactcgccaacaaaaagttgcagaggtggcacacacatttcctattcatgcattagaacctctatctcatgaagattgttggtctttac 11781664  T
Q  107 tctcgaagcatgcatttggtgatgaagactatgttcgtggtaaatacccaaagctagaagagattggcaggaagattgctagaaagtgtggtggattgcc 206  Q
    ||||||| ||||||||||||  | | |||| || |||  ||||||||||||| |||||||||||||||||||||||||||| ||| ||||||||||||||    
T  11781663 tctcgaaacatgcatttggtagtaaggactgtgatcgccgtaaatacccaaacctagaagagattggcaggaagattgctaaaaaatgtggtggattgcc 11781564  T
Q  207 gatagctgc 215  Q
     ||||||||    
T  11781563 aatagctgc 11781555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 7 - 227
Target Start/End: Original strand, 10517773 - 10517993
Alignment:
Q  7 gtgataataacaacacgcgaacaaaaagttgcagaggtcgcatgcacatttcctattcataaattagaacctctatctgatgatgattgttggactttac 106  Q
    ||||| |||||||| ||| ||||||||||||||||||| |||  |||||||||||||||  ||||||||||||||||| |||| ||||||||| ||||||    
T  10517773 gtgattataacaacgcgccaacaaaaagttgcagaggtggcacacacatttcctattcaggaattagaacctctatctcatgaagattgttggtctttac 10517872  T
Q  107 tctcgaagcatgcatttggtgatgaagactatgttcgtggtaaatacccaaagctagaagagattggcaggaagattgctagaaagtgtggtggattgcc 206  Q
    |||| || ||||||||||||  | | |||  || ||   ||||||||||||| || ||||||||||||||||||||||||| ||| |||||||| || ||    
T  10517873 tctcaaaacatgcatttggtagtaaggacagtgatcacagtaaatacccaaatcttgaagagattggcaggaagattgctaaaaaatgtggtgggttacc 10517972  T
Q  207 gatagctgcaaaagcacttgg 227  Q
     |||||||| ||| |||||||    
T  10517973 aatagctgccaaaacacttgg 10517993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 7 - 122
Target Start/End: Complemental strand, 10433825 - 10433710
Alignment:
Q  7 gtgataataacaacacgcgaacaaaaagttgcagaggtcgcatgcacatttcctattcataaattagaacctctatctgatgatgattgttggactttac 106  Q
    ||||| |||||||| ||| ||||||||||||| ||||| |||  |||||||||||| ||||||||||||| ||||||  |||| ||||||||| ||||||    
T  10433825 gtgattataacaacgcgccaacaaaaagttgctgaggtggcacacacatttcctatacataaattagaacttctatcaaatgaagattgttggtctttac 10433726  T
Q  107 tctcgaagcatgcatt 122  Q
    ||||||||||||||||    
T  10433725 tctcgaagcatgcatt 10433710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 7 - 224
Target Start/End: Original strand, 13333192 - 13333409
Alignment:
Q  7 gtgataataacaacacgcgaacaaaaagttgcagaggtcgcatgcacatttcctattcataaattagaacctctatctgatgatgattgttggactttac 106  Q
    ||||| || ||||||||| ||||||||||||| ||||| |||  ||| ||||||||||| ||| |||| |||||||| |||||||| |||||| | ||||    
T  13333192 gtgatcatcacaacacgccaacaaaaagttgcggaggttgcacacacgtttcctattcacaaagtagatcctctatcagatgatgactgttggtcgttac 13333291  T
Q  107 tctcgaagcatgcatttggtgatgaagactatgttcgtggtaaatacccaaagctagaagagattggcaggaagattgctagaaagtgtggtggattgcc 206  Q
    | || ||||||||||| ||   |||||||  |    || | || |||||||| |||||||| ||||| || |||||||| | ||||||||||||||||||    
T  13333292 tttcaaagcatgcattcggaagtgaagaccgtcgaggtagaaagtacccaaatctagaagaaattggtagaaagattgccaaaaagtgtggtggattgcc 13333391  T
Q  207 gatagctgcaaaagcact 224  Q
     |||||||| ||| ||||    
T  13333392 catagctgctaaaacact 13333409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 7 - 224
Target Start/End: Original strand, 13344377 - 13344594
Alignment:
Q  7 gtgataataacaacacgcgaacaaaaagttgcagaggtcgcatgcacatttcctattcataaattagaacctctatctgatgatgattgttggactttac 106  Q
    ||||| || ||||||||| ||||||||||||| ||||| |||  ||| ||||||||||| ||| |||| |||||||| |||||||| |||||| | ||||    
T  13344377 gtgatcatcacaacacgccaacaaaaagttgcggaggttgcacacacgtttcctattcacaaagtagatcctctatcagatgatgactgttggtcgttac 13344476  T
Q  107 tctcgaagcatgcatttggtgatgaagactatgttcgtggtaaatacccaaagctagaagagattggcaggaagattgctagaaagtgtggtggattgcc 206  Q
    | || ||||||||||| ||   |||||||  |    || | || |||||||| |||||||| ||||| || |||||||| | ||||||||||||||||||    
T  13344477 tttcaaagcatgcattcggaagtgaagaccgtcgaggtagaaagtacccaaatctagaagaaattggtagaaagattgccaaaaagtgtggtggattgcc 13344576  T
Q  207 gatagctgcaaaagcact 224  Q
     |||||||| ||| ||||    
T  13344577 catagctgctaaaacact 13344594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 7 - 122
Target Start/End: Original strand, 10077557 - 10077672
Alignment:
Q  7 gtgataataacaacacgcgaacaaaaagttgcagaggtcgcatgcacatttcctattcataaattagaacctctatctgatgatgattgttggactttac 106  Q
    ||||| |||||||||||| ||||||||||||||||||| ||| ||||||||||||| |||| |||||||||| ||||  |||| |||||||||  |||||    
T  10077557 gtgattataacaacacgccaacaaaaagttgcagaggtggcacgcacatttcctatacatatattagaacctttatcaaatgaagattgttggtatttac 10077656  T
Q  107 tctcgaagcatgcatt 122  Q
    | || |||||||||||    
T  10077657 tttcaaagcatgcatt 10077672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 7 - 213
Target Start/End: Original strand, 13171319 - 13171525
Alignment:
Q  7 gtgataataacaacacgcgaacaaaaagttgcagaggtcgcatgcacatttcctattcataaattagaacctctatctgatgatgattgttggactttac 106  Q
    ||||| || ||||||||| ||||||||||||| ||||| |||  ||| ||||||||||| ||| |||| |||||||| |||||||| |||||| | ||||    
T  13171319 gtgatcatcacaacacgccaacaaaaagttgcggaggttgcacacacgtttcctattcacaaagtagatcctctatcagatgatgactgttggtcgttac 13171418  T
Q  107 tctcgaagcatgcatttggtgatgaagactatgttcgtggtaaatacccaaagctagaagagattggcaggaagattgctagaaagtgtggtggattgcc 206  Q
    | || ||||||||||| ||   |||||||  |    || | || |||||||| |||||||| ||||| || |||||||| | ||||||||||||||||||    
T  13171419 tttcaaagcatgcattcggaagtgaagaccgtcgaggtagaaagtacccaaatctagaagaaattggtagaaagattgccaaaaagtgtggtggattgcc 13171518  T
Q  207 gatagct 213  Q
     ||||||    
T  13171519 catagct 13171525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 7 - 215
Target Start/End: Original strand, 13161268 - 13161476
Alignment:
Q  7 gtgataataacaacacgcgaacaaaaagttgcagaggtcgcatgcacatttcctattcataaattagaacctctatctgatgatgattgttggactttac 106  Q
    ||||| || ||||||||| ||||||||||||| ||||| |||  ||| ||||||||||| ||| |||| |||||||| |||||||| |||||| | ||||    
T  13161268 gtgatcatcacaacacgccaacaaaaagttgcggaggttgcacacacgtttcctattcacaaagtagatcctctatcagatgatgactgttggtcgttac 13161367  T
Q  107 tctcgaagcatgcatttggtgatgaagactatgttcgtggtaaatacccaaagctagaagagattggcaggaagattgctagaaagtgtggtggattgcc 206  Q
    | || ||||||||||||||   ||||| |  || | || |||||| |||||| || ||||| ||||| || ||||| || | ||| |||||||| |||||    
T  13161368 tttcaaagcatgcatttggaagtgaagtccgtggtggtagtaaatgcccaaatctggaagaaattggtagaaagatcgccaaaaaatgtggtgggttgcc 13161467  T
Q  207 gatagctgc 215  Q
     ||||||||    
T  13161468 catagctgc 13161476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 7 - 215
Target Start/End: Original strand, 13289953 - 13290161
Alignment:
Q  7 gtgataataacaacacgcgaacaaaaagttgcagaggtcgcatgcacatttcctattcataaattagaacctctatctgatgatgattgttggactttac 106  Q
    ||||| || ||||||||| ||||||||||||| ||||| |||  ||| ||||||||||| ||| |||| |||||||| |||||||| |||||| | ||||    
T  13289953 gtgatcatcacaacacgccaacaaaaagttgcggaggttgcacacacgtttcctattcacaaagtagatcctctatcagatgatgactgttggtcgttac 13290052  T
Q  107 tctcgaagcatgcatttggtgatgaagactatgttcgtggtaaatacccaaagctagaagagattggcaggaagattgctagaaagtgtggtggattgcc 206  Q
    | || ||||||||||||||   ||||| |  || | || |||||| |||||| || ||||| ||||| || ||||| || | ||| |||||||| |||||    
T  13290053 tttcaaagcatgcatttggaagtgaagtccgtggtggtagtaaatgcccaaatctggaagaaattggtagaaagatcgccaaaaaatgtggtgggttgcc 13290152  T
Q  207 gatagctgc 215  Q
     ||||||||    
T  13290153 catagctgc 13290161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 16 - 227
Target Start/End: Original strand, 8861583 - 8861794
Alignment:
Q  16 acaacacgcgaacaaaaagttgcagaggtcgcatgcacatttcctattcataaattagaacctctatctgatgatgattgttggactttactctcgaagc 115  Q
    ||||||||| ||||||||||||||||||| |||   ||||||||||||||||||||||||  | ||||| |||| |||   ||| |||||||||| ||||    
T  8861583 acaacacgccaacaaaaagttgcagaggttgcacatacatttcctattcataaattagaagttttatctaatgaagatacatggtctttactctcaaagc 8861682  T
Q  116 atgcatttggtgatgaagactatgttcgtggtaaatacccaaagctagaagagattggcaggaagattgctagaaagtgtggtggattgccgatagctgc 215  Q
    ||||||||||   |||| ||| |  |     ||||| | |||| |||||||  ||||| || |||||||| |||||||||| ||| ||||| ||||||||    
T  8861683 atgcatttggaagtgaaaacttttgtgacaataaatgctcaaacctagaagcaattggtagaaagattgcaagaaagtgtgctgggttgcccatagctgc 8861782  T
Q  216 aaaagcacttgg 227  Q
    |||| |||||||    
T  8861783 aaaaacacttgg 8861794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 7 - 122
Target Start/End: Original strand, 9850027 - 9850142
Alignment:
Q  7 gtgataataacaacacgcgaacaaaaagttgcagaggtcgcatgcacatttcctattcataaattagaacctctatctgatgatgattgttggactttac 106  Q
    ||||| |||||||||||| ||||||||||||| ||||| |||  ||||||||| || ||||||||||| | ||||||  |||| ||||||||| ||||||    
T  9850027 gtgattataacaacacgccaacaaaaagttgctgaggtggcacacacatttccaatacataaattagatcttctatcaaatgaagattgttggtctttac 9850126  T
Q  107 tctcgaagcatgcatt 122  Q
    |||| |||||||||||    
T  9850127 tctcaaagcatgcatt 9850142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 7 - 122
Target Start/End: Original strand, 10032291 - 10032406
Alignment:
Q  7 gtgataataacaacacgcgaacaaaaagttgcagaggtcgcatgcacatttcctattcataaattagaacctctatctgatgatgattgttggactttac 106  Q
    ||||| |||||||||||| ||| ||||||||| ||||| ||||||||||||||||| ||| || || ||| ||||||  |||| ||||||||| ||||||    
T  10032291 gtgattataacaacacgccaacgaaaagttgctgaggtggcatgcacatttcctatacatgaactaaaacttctatcaaatgaagattgttggtctttac 10032390  T
Q  107 tctcgaagcatgcatt 122  Q
    |||| |||||||||||    
T  10032391 tctcaaagcatgcatt 10032406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 7 - 122
Target Start/End: Original strand, 10663814 - 10663929
Alignment:
Q  7 gtgataataacaacacgcgaacaaaaagttgcagaggtcgcatgcacatttcctattcataaattagaacctctatctgatgatgattgttggactttac 106  Q
    ||||| |||||||| ||||||||||||||||| ||||| |||  |||||||||||| ||||||||||||| ||||||  |||| ||||||||| | ||||    
T  10663814 gtgattataacaacgcgcgaacaaaaagttgctgaggtggcacacacatttcctatacataaattagaacttctatcaaatgaagattgttggtccttac 10663913  T
Q  107 tctcgaagcatgcatt 122  Q
    | || |||||||||||    
T  10663914 tttcaaagcatgcatt 10663929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 16 - 227
Target Start/End: Complemental strand, 11130798 - 11130587
Alignment:
Q  16 acaacacgcgaacaaaaagttgcagaggtcgcatgcacatttcctattcataaattagaacctctatctgatgatgattgttggactttactctcgaagc 115  Q
    ||||||||| ||||||||||||||||||| |||   ||||||||||||||||||||||||  | ||||| |||| |||   ||| |||||||||| ||||    
T  11130798 acaacacgccaacaaaaagttgcagaggttgcacatacatttcctattcataaattagaagttttatctaatgaagatacatggtctttactctcaaagc 11130699  T
Q  116 atgcatttggtgatgaagactatgttcgtggtaaatacccaaagctagaagagattggcaggaagattgctagaaagtgtggtggattgccgatagctgc 215  Q
    ||||||||||   |||| ||| |  |     ||||| | |||| |||||||  ||||| || |||||||| |||||||||| ||| ||||| ||||||||    
T  11130698 atgcatttggaagtgaaaacttttgtgacaataaatgctcaaacctagaagcaattggtagaaagattgcaagaaagtgtgctgggttgcccatagctgc 11130599  T
Q  216 aaaagcacttgg 227  Q
    |||| |||||||    
T  11130598 aaaaacacttgg 11130587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 16 - 227
Target Start/End: Complemental strand, 11148626 - 11148415
Alignment:
Q  16 acaacacgcgaacaaaaagttgcagaggtcgcatgcacatttcctattcataaattagaacctctatctgatgatgattgttggactttactctcgaagc 115  Q
    ||||||||| ||||||||||||||||||| |||   ||||||||||||||||||||||||  | ||||| |||| |||   ||| |||||||||| ||||    
T  11148626 acaacacgccaacaaaaagttgcagaggttgcacatacatttcctattcataaattagaagttttatctaatgaagatacatggtctttactctcaaagc 11148527  T
Q  116 atgcatttggtgatgaagactatgttcgtggtaaatacccaaagctagaagagattggcaggaagattgctagaaagtgtggtggattgccgatagctgc 215  Q
    ||||||||||   |||| ||| |  |     ||||| | |||| |||||||  ||||| || |||||||| |||||||||| ||| ||||| ||||||||    
T  11148526 atgcatttggaagtgaaaacttttgtgacaataaatgctcaaacctagaagcaattggtagaaagattgcaagaaagtgtgttgggttgcccatagctgc 11148427  T
Q  216 aaaagcacttgg 227  Q
    |||| |||||||    
T  11148426 aaaaacacttgg 11148415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 7 - 122
Target Start/End: Original strand, 9839149 - 9839264
Alignment:
Q  7 gtgataataacaacacgcgaacaaaaagttgcagaggtcgcatgcacatttcctattcataaattagaacctctatctgatgatgattgttggactttac 106  Q
    ||||| |||||||| ||| ||||||||||||| ||||| |||  ||||||||| || ||||||||||| | ||||||  |||| ||||||||| ||||||    
T  9839149 gtgattataacaacgcgccaacaaaaagttgctgaggtggcacacacatttccaatacataaattagatcttctatcaaatgaagattgttggtctttac 9839248  T
Q  107 tctcgaagcatgcatt 122  Q
    |||| |||||||||||    
T  9839249 tctcaaagcatgcatt 9839264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 7 - 122
Target Start/End: Original strand, 10089078 - 10089193
Alignment:
Q  7 gtgataataacaacacgcgaacaaaaagttgcagaggtcgcatgcacatttcctattcataaattagaacctctatctgatgatgattgttggactttac 106  Q
    ||||| |||||||| ||| || ||||||| || ||||| |||  |||||||||||| ||||||||||||| ||| ||  |||| ||||||||||||||||    
T  10089078 gtgattataacaacgcgccaagaaaaagtagctgaggtggcacacacatttcctatacataaattagaacttctgtcaaatgaagattgttggactttac 10089177  T
Q  107 tctcgaagcatgcatt 122  Q
    |||| |||||||||||    
T  10089178 tctcaaagcatgcatt 10089193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 7 - 122
Target Start/End: Original strand, 10195961 - 10196076
Alignment:
Q  7 gtgataataacaacacgcgaacaaaaagttgcagaggtcgcatgcacatttcctattcataaattagaacctctatctgatgatgattgttggactttac 106  Q
    ||||| |||||||| ||| || ||||||| || ||||| |||  |||||||||||| ||||||||||||| ||| ||  |||| ||||||||||||||||    
T  10195961 gtgattataacaacgcgccaagaaaaagtagctgaggtggcacacacatttcctatacataaattagaacttctgtcaaatgaagattgttggactttac 10196060  T
Q  107 tctcgaagcatgcatt 122  Q
    |||| |||||||||||    
T  10196061 tctcaaagcatgcatt 10196076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 7 - 122
Target Start/End: Original strand, 11769522 - 11769637
Alignment:
Q  7 gtgataataacaacacgcgaacaaaaagttgcagaggtcgcatgcacatttcctattcataaattagaacctctatctgatgatgattgttggactttac 106  Q
    ||||| |||||||||||| ||| ||||||||| ||||| |||  |||||||||||| ||| ||||| ||| ||||||  |||| ||||||||| ||||||    
T  11769522 gtgattataacaacacgccaacgaaaagttgctgaggtggcacacacatttcctatacatgaattaaaacttctatcaaatgaagattgttggtctttac 11769621  T
Q  107 tctcgaagcatgcatt 122  Q
    |||| |||||||||||    
T  11769622 tctcaaagcatgcatt 11769637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 7 - 120
Target Start/End: Complemental strand, 10363579 - 10363466
Alignment:
Q  7 gtgataataacaacacgcgaacaaaaagttgcagaggtcgcatgcacatttcctattcataaattagaacctctatctgatgatgattgttggactttac 106  Q
    ||||| |||||||| ||| || ||||||| || ||||| |||  |||||||||||| ||||||||||| | ||||||  |||| ||||||||||||||||    
T  10363579 gtgattataacaacgcgccaagaaaaagtagctgaggtggcacacacatttcctatacataaattagatcttctatcaaatgaagattgttggactttac 10363480  T
Q  107 tctcgaagcatgca 120  Q
    |||| |||||||||    
T  10363479 tctcaaagcatgca 10363466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 16 - 125
Target Start/End: Complemental strand, 11159789 - 11159680
Alignment:
Q  16 acaacacgcgaacaaaaagttgcagaggtcgcatgcacatttcctattcataaattagaacctctatctgatgatgattgttggactttactctcgaagc 115  Q
    ||||||||| ||||||||||||||||||| |||   ||||||||||||||||||||||||  | ||||| |||| |||   ||| |||||||||| ||||    
T  11159789 acaacacgccaacaaaaagttgcagaggttgcacatacatttcctattcataaattagaagttttatctaatgaagatacatggtctttactctcaaagc 11159690  T
Q  116 atgcatttgg 125  Q
    ||||||||||    
T  11159689 atgcatttgg 11159680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 7 - 122
Target Start/End: Original strand, 10260986 - 10261101
Alignment:
Q  7 gtgataataacaacacgcgaacaaaaagttgcagaggtcgcatgcacatttcctattcataaattagaacctctatctgatgatgattgttggactttac 106  Q
    ||||| |||||||| ||  ||||||||||||| ||||| ||||||||||||||||| ||| || || ||| ||||||  |||| || |||||| ||||||    
T  10260986 gtgattataacaacgcggcaacaaaaagttgctgaggtggcatgcacatttcctatacatgaactaaaacttctatcgaatgaagactgttggtctttac 10261085  T
Q  107 tctcgaagcatgcatt 122  Q
    |||| |||||||||||    
T  10261086 tctcaaagcatgcatt 10261101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 7 - 215
Target Start/End: Complemental strand, 10375626 - 10375418
Alignment:
Q  7 gtgataataacaacacgcgaacaaaaagttgcagaggtcgcatgcacatttcctattcataaattagaacctctatctgatgatgattgttggactttac 106  Q
    ||||| |||||||| ||| ||| |||||||||  |||| ||||||||||||||||| ||| || || ||| ||||||  |||| || |||||| ||||||    
T  10375626 gtgattataacaacgcgccaacgaaaagttgctaaggtagcatgcacatttcctatacatgaactaaaacttctatcgaatgaagactgttggtctttac 10375527  T
Q  107 tctcgaagcatgcatttggtgatgaagactatgttcgtggtaaatacccaaagctagaagagattggcaggaagattgctagaaagtgtggtggattgcc 206  Q
    |||| ||||||||||| |||  ||| || | |   | | ||  | || |||  || ||||| || |||||||||||||| ||||||||||| ||||||||    
T  10375526 tctcaaagcatgcattgggtagtgatgagtttcaccatagttcaaacacaacccttgaagaaataggcaggaagattgcaagaaagtgtggaggattgcc 10375427  T
Q  207 gatagctgc 215  Q
     ||||||||    
T  10375426 aatagctgc 10375418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 7 - 122
Target Start/End: Original strand, 10127216 - 10127331
Alignment:
Q  7 gtgataataacaacacgcgaacaaaaagttgcagaggtcgcatgcacatttcctattcataaattagaacctctatctgatgatgattgttggactttac 106  Q
    ||||| |||||||| ||| ||||||||||||| ||||| ||| ||||||||||||| ||| || || ||   ||||| ||||| ||||||||| ||||||    
T  10127216 gtgattataacaacgcgccaacaaaaagttgctgaggtggcacgcacatttcctatacatgaactaaaagtactatcagatgaagattgttggtctttac 10127315  T
Q  107 tctcgaagcatgcatt 122  Q
    | || |||||||||||    
T  10127316 tatcaaagcatgcatt 10127331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 7 - 122
Target Start/End: Original strand, 10527646 - 10527761
Alignment:
Q  7 gtgataataacaacacgcgaacaaaaagttgcagaggtcgcatgcacatttcctattcataaattagaacctctatctgatgatgattgttggactttac 106  Q
    ||||| |||||||| | | ||| ||||||||| ||||| ||| ||||||||||||| |||||| || ||| | ||||  |||| ||||||||| ||||||    
T  10527646 gtgattataacaacccaccaacgaaaagttgctgaggtggcacgcacatttcctatacataaactaaaacttttatcaaatgaagattgttggtctttac 10527745  T
Q  107 tctcgaagcatgcatt 122  Q
    |||| |||||||||||    
T  10527746 tctcaaagcatgcatt 10527761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 16 - 227
Target Start/End: Original strand, 10889603 - 10889814
Alignment:
Q  16 acaacacgcgaacaaaaagttgcagaggtcgcatgcacatttcctattcataaattagaacctctatctgatgatgattgttggactttactctcgaagc 115  Q
    ||||||||| | ||||||||||||||||| |||  ||| | ||||||||| |||||||||  | ||||| |||| |||   ||| |||||||||| ||||    
T  10889603 acaacacgccagcaaaaagttgcagaggttgcacacacgtatcctattcacaaattagaagttttatctaatgaagatacatggtctttactctcaaagc 10889702  T
Q  116 atgcatttggtgatgaagactatgttcgtggtaaatacccaaagctagaagagattggcaggaagattgctagaaagtgtggtggattgccgatagctgc 215  Q
    ||||||||||   |||| ||| |  |     ||||| | |||| |||||||  ||||| ||  ||||||| |||||||||| ||| ||||| ||||||||    
T  10889703 atgcatttggaagtgaaaacttttgtgacaataaatgctcaaacctagaagcaattggtagacagattgcaagaaagtgtgctgggttgcccatagctgc 10889802  T
Q  216 aaaagcacttgg 227  Q
    |||| |||||||    
T  10889803 aaaaacacttgg 10889814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 172 - 227
Target Start/End: Original strand, 10032456 - 10032511
Alignment:
Q  172 ggcaggaagattgctagaaagtgtggtggattgccgatagctgcaaaagcacttgg 227  Q
    |||||||||||||| ||||||||||| |||||||| |||||||| ||| |||||||    
T  10032456 ggcaggaagattgcaagaaagtgtggaggattgccaatagctgccaaaacacttgg 10032511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 7 - 122
Target Start/End: Original strand, 10184530 - 10184645
Alignment:
Q  7 gtgataataacaacacgcgaacaaaaagttgcagaggtcgcatgcacatttcctattcataaattagaacctctatctgatgatgattgttggactttac 106  Q
    ||||| |||||||| ||| || ||||||| || ||||| |||  |||||||||||| ||| || || ||| ||||||  |||| ||||||||| | ||||    
T  10184530 gtgattataacaacgcgccaagaaaaagtagctgaggtggcacacacatttcctatacatgaactaaaacttctatcaaatgaagattgttggtcgttac 10184629  T
Q  107 tctcgaagcatgcatt 122  Q
    |||| |||||||||||    
T  10184630 tctcaaagcatgcatt 10184645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 172 - 227
Target Start/End: Original strand, 10261151 - 10261206
Alignment:
Q  172 ggcaggaagattgctagaaagtgtggtggattgccgatagctgcaaaagcacttgg 227  Q
    |||||||||||||| ||||||||||| |||||||| |||||||| ||| |||||||    
T  10261151 ggcaggaagattgcaagaaagtgtggaggattgccaatagctgccaaaacacttgg 10261206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 163 - 224
Target Start/End: Original strand, 10581045 - 10581106
Alignment:
Q  163 gaagagattggcaggaagattgctagaaagtgtggtggattgccgatagctgcaaaagcact 224  Q
    ||||| ||||||||||||||||| |||| |||||| |||||||| |||||||| ||| ||||    
T  10581045 gaagaaattggcaggaagattgcaagaaggtgtgggggattgccaatagctgctaaaacact 10581106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 163 - 215
Target Start/End: Original strand, 9839305 - 9839357
Alignment:
Q  163 gaagagattggcaggaagattgctagaaagtgtggtggattgccgatagctgc 215  Q
    ||||| || |||||||||||||| ||||||||||| |||||||| ||||||||    
T  9839305 gaagaaataggcaggaagattgcaagaaagtgtggaggattgccaatagctgc 9839357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 163 - 215
Target Start/End: Original strand, 9850183 - 9850235
Alignment:
Q  163 gaagagattggcaggaagattgctagaaagtgtggtggattgccgatagctgc 215  Q
    ||||| || |||||||||||||| ||||||||||| |||||||| ||||||||    
T  9850183 gaagaaataggcaggaagattgcaagaaagtgtggaggattgccaatagctgc 9850235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 163 - 215
Target Start/End: Original strand, 10077713 - 10077765
Alignment:
Q  163 gaagagattggcaggaagattgctagaaagtgtggtggattgccgatagctgc 215  Q
    ||||| || |||||||||||||| ||||||||||| |||||||| ||||||||    
T  10077713 gaagaaataggcaggaagattgcaagaaagtgtggaggattgccaatagctgc 10077765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 172 - 224
Target Start/End: Original strand, 10127381 - 10127433
Alignment:
Q  172 ggcaggaagattgctagaaagtgtggtggattgccgatagctgcaaaagcact 224  Q
    |||||||||||||| ||||||||||| |||||||| |||||||| ||| ||||    
T  10127381 ggcaggaagattgcaagaaagtgtggaggattgccaatagctgctaaaacact 10127433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 163 - 215
Target Start/End: Original strand, 10184686 - 10184738
Alignment:
Q  163 gaagagattggcaggaagattgctagaaagtgtggtggattgccgatagctgc 215  Q
    ||||| || |||||||||||||| ||||||||||| |||||||| ||||||||    
T  10184686 gaagaaataggcaggaagattgcaagaaagtgtggaggattgccaatagctgc 10184738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #37
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 172 - 215
Target Start/End: Original strand, 10663979 - 10664022
Alignment:
Q  172 ggcaggaagattgctagaaagtgtggtggattgccgatagctgc 215  Q
    |||||||||||||| ||||||||||| |||||||| ||||||||    
T  10663979 ggcaggaagattgcaagaaagtgtggaggattgccaatagctgc 10664022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #38
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 172 - 215
Target Start/End: Original strand, 10672135 - 10672178
Alignment:
Q  172 ggcaggaagattgctagaaagtgtggtggattgccgatagctgc 215  Q
    |||||||||||||| ||||||||||| |||||||| ||||||||    
T  10672135 ggcaggaagattgcaagaaagtgtggaggattgccaatagctgc 10672178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #39
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 163 - 224
Target Start/End: Complemental strand, 10363423 - 10363362
Alignment:
Q  163 gaagagattggcaggaagattgctagaaagtgtggtggattgccgatagctgcaaaagcact 224  Q
    ||||| || |||||||||||||| ||||||||||| |||||||| || ||||| ||| ||||    
T  10363423 gaagaaataggcaggaagattgcaagaaagtgtggaggattgccaattgctgctaaaacact 10363362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #40
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 179 - 227
Target Start/End: Complemental strand, 11159626 - 11159578
Alignment:
Q  179 agattgctagaaagtgtggtggattgccgatagctgcaaaagcacttgg 227  Q
    ||||||| |||||||||| ||| ||||| |||||||||||| |||||||    
T  11159626 agattgcaagaaagtgtgctgggttgcccatagctgcaaaaacacttgg 11159578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 162; Significance: 1e-86; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 2 - 227
Target Start/End: Original strand, 11485321 - 11485546
Alignment:
Q  2 gcaaagtgataataacaacacgcgaacaaaaagttgcagaggtcgcatgcacatttcctattcataaattagaacctctatctgatgatgattgttggac 101  Q
    |||| ||||| ||||||||||||||| | ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||| |    
T  11485321 gcaaggtgatcataacaacacgcgaagagaaagttgcagaggtcgcatgcgcatttcctattcataaattagaacctctatctgatgaagattgttggtc 11485420  T
Q  102 tttactctcgaagcatgcatttggtgatgaagactatgttcgtggtaaatacccaaagctagaagagattggcaggaagattgctagaaagtgtggtgga 201  Q
    |||||||||||||||||||||||| | |||||| | | |||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  11485421 tttactctcgaagcatgcatttggcggtgaagaatttcttcggggtaaatacccaaacctagaagagattggcaggaagattgctagaaagtgtggtgga 11485520  T
Q  202 ttgccgatagctgcaaaagcacttgg 227  Q
    ||||| || |||||||||||||||||    
T  11485521 ttgccaattgctgcaaaagcacttgg 11485546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 13 - 224
Target Start/End: Complemental strand, 44957463 - 44957253
Alignment:
Q  13 ataacaacacgcgaacaaaaagttgcagaggtcgcatgcacatttcctattcataaattagaacctctatctgatgatgattgttggactttactctcga 112  Q
    ||||||||||| |||||||| ||||||||||| |||  ||||||||| ||||||||||||||||||||||||||||| ||||||||| |||||||||| |    
T  44957463 ataacaacacgtgaacaaaacgttgcagaggttgcacacacatttccgattcataaattagaacctctatctgatgaagattgttggtctttactctcaa 44957364  T
Q  113 agcatgcatttggtgatgaagactatgttcgtggtaaatacccaaagctagaagagattggcaggaagattgctagaaagtgtggtggattgccgatagc 212  Q
    ||||||||||||     ||||||  |||||  ||| |||||||||| |||||||||||||||||||||||||||| ||| |||||||||||||| |||||    
T  44957363 agcatgcatttgacagcgaagaccgtgttcaaggt-aatacccaaacctagaagagattggcaggaagattgctaaaaaatgtggtggattgccaatagc 44957265  T
Q  213 tgcaaaagcact 224  Q
    ||| ||| ||||    
T  44957264 tgccaaaacact 44957253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 84; Significance: 5e-40; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 13 - 224
Target Start/End: Complemental strand, 17852698 - 17852487
Alignment:
Q  13 ataacaacacgcgaacaaaaagttgcagaggtcgcatgcacatttcctattcataaattagaacctctatctgatgatgattgttggactttactctcga 112  Q
    ||||||||||||  | |||||||||| ||||| ||| |||||||||| |||||||||||||||||| |||| ||||| ||||||||| |||| ||||| |    
T  17852698 ataacaacacgcctaaaaaaagttgcggaggttgcacgcacatttccaattcataaattagaacctatatccgatgaagattgttggtctttgctctcaa 17852599  T
Q  113 agcatgcatttggtgatgaagactatgttcgtggtaaatacccaaagctagaagagattggcaggaagattgctagaaagtgtggtggattgccgatagc 212  Q
    ||||||||||||| | |||||||  || ||   |||||||| ||||  ||||||  ||||||||||||||  |||||||||||| ||| ||||| |||||    
T  17852598 agcatgcatttggaggtgaagaccttggtcacagtaaatactcaaatttagaagcaattggcaggaagatatctagaaagtgtgatggcttgccaatagc 17852499  T
Q  213 tgcaaaagcact 224  Q
    ||| ||||||||    
T  17852498 tgccaaagcact 17852487  T

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Target: scaffold0002 (Bit Score: 62; Significance: 6e-27; HSPs: 3)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 7 - 224
Target Start/End: Complemental strand, 145720 - 145503
Alignment:
Q  7 gtgataataacaacacgcgaacaaaaagttgcagaggtcgcatgcacatttcctattcataaattagaacctctatctgatgatgattgttggactttac 106  Q
    ||||| || ||||||||| ||||||||||||| ||||| |||  ||| ||||||||||| ||| |||| |||||||| |||||||| |||||| | ||||    
T  145720 gtgatcatcacaacacgccaacaaaaagttgcggaggttgcacacacgtttcctattcacaaagtagatcctctatcagatgatgactgttggtcgttac 145621  T
Q  107 tctcgaagcatgcatttggtgatgaagactatgttcgtggtaaatacccaaagctagaagagattggcaggaagattgctagaaagtgtggtggattgcc 206  Q
    | || ||||||||||| ||   |||||||  |    || | || |||||||| |||||||| ||||| || |||||||| | ||||||||||||||||||    
T  145620 tttcaaagcatgcattcggaagtgaagaccgtcgaggtagaaagtacccaaatctagaagaaattggtagaaagattgccaaaaagtgtggtggattgcc 145521  T
Q  207 gatagctgcaaaagcact 224  Q
     |||||||| ||| ||||    
T  145520 catagctgctaaaacact 145503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002; HSP #2
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 7 - 224
Target Start/End: Complemental strand, 154025 - 153808
Alignment:
Q  7 gtgataataacaacacgcgaacaaaaagttgcagaggtcgcatgcacatttcctattcataaattagaacctctatctgatgatgattgttggactttac 106  Q
    ||||| || ||||||||| ||||||||||||| ||||| |||  ||| ||||||||||| ||| |||| |||||||| |||||||| |||||| | ||||    
T  154025 gtgatcatcacaacacgccaacaaaaagttgcggaggttgcacacacgtttcctattcacaaagtagatcctctatcagatgatgactgttggtcgttac 153926  T
Q  107 tctcgaagcatgcatttggtgatgaagactatgttcgtggtaaatacccaaagctagaagagattggcaggaagattgctagaaagtgtggtggattgcc 206  Q
    | || ||||||||||| ||   |||||||  |    || | || |||||||| |||||||| ||||| || |||||||| | ||||||||||||||||||    
T  153925 tttcaaagcatgcattcggaagtgaagaccgtcgaggtagaaagtacccaaatctagaagaaattggtagaaagattgccaaaaagtgtggtggattgcc 153826  T
Q  207 gatagctgcaaaagcact 224  Q
     |||||||| ||| ||||    
T  153825 catagctgctaaaacact 153808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002; HSP #3
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 7 - 213
Target Start/End: Complemental strand, 135669 - 135463
Alignment:
Q  7 gtgataataacaacacgcgaacaaaaagttgcagaggtcgcatgcacatttcctattcataaattagaacctctatctgatgatgattgttggactttac 106  Q
    ||||| || ||||||||| ||||||||||||| ||||| |||  ||| ||||||||||| ||| |||| |||||||| |||||||| |||||| | ||||    
T  135669 gtgatcatcacaacacgccaacaaaaagttgcggaggttgcacacacgtttcctattcacaaagtagatcctctatcagatgatgactgttggtcgttac 135570  T
Q  107 tctcgaagcatgcatttggtgatgaagactatgttcgtggtaaatacccaaagctagaagagattggcaggaagattgctagaaagtgtggtggattgcc 206  Q
    | || ||||||||||| ||   |||||||  |    || | || |||||||| |||||||| ||||| || |||||||| | ||||||||||||||||||    
T  135569 tttcaaagcatgcattcggaagtgaagaccgtcgaggtagaaagtacccaaatctagaagaaattggtagaaagattgccaaaaagtgtggtggattgcc 135470  T
Q  207 gatagct 213  Q
     ||||||    
T  135469 catagct 135463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 60; Significance: 1e-25; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 7 - 122
Target Start/End: Original strand, 26907185 - 26907300
Alignment:
Q  7 gtgataataacaacacgcgaacaaaaagttgcagaggtcgcatgcacatttcctattcataaattagaacctctatctgatgatgattgttggactttac 106  Q
    ||||| |||||||| ||| ||||||||||||||||||| |||   ||||||||||| ||||||||||||||||||||   ||| ||||||||| ||||||    
T  26907185 gtgattataacaacgcgccaacaaaaagttgcagaggtggcacatacatttcctatacataaattagaacctctatcaactgaagattgttggtctttac 26907284  T
Q  107 tctcgaagcatgcatt 122  Q
    |||| |||||||||||    
T  26907285 tctcaaagcatgcatt 26907300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 163 - 224
Target Start/End: Original strand, 26907341 - 26907402
Alignment:
Q  163 gaagagattggcaggaagattgctagaaagtgtggtggattgccgatagctgcaaaagcact 224  Q
    ||||| ||||||||||||||||| ||||||||||| |||||||| || ||||| ||| ||||    
T  26907341 gaagaaattggcaggaagattgcaagaaagtgtggaggattgccaattgctgctaaaacact 26907402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 58; Significance: 1e-24; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 55 - 227
Target Start/End: Complemental strand, 31679466 - 31679294
Alignment:
Q  55 tttcctattcataaattagaacctctatctgatgatgattgttggactttactctcgaagcatgcatttggtgatgaag-actatgttcgtggtaaatac 153  Q
    ||||||||  ||||||||||||||||||| ||||||||||| ||| |||||||||| ||||||||||||||   ||||| ||| || | |  ||||||||    
T  31679466 tttcctatctataaattagaacctctatcagatgatgattgctggtctttactctcaaagcatgcatttggaagtgaagaactttg-tggccgtaaatac 31679368  T
Q  154 ccaaagctagaagagattggcaggaagattgctagaaagtgtggtggattgccgatagctgcaaaagcacttgg 227  Q
    ||||  |||||||  ||||| ||||||||||| | ||||||| | |||||||| |||||||| ||| |||||||    
T  31679367 ccaagcctagaagcaattggtaggaagattgcaaaaaagtgttgcggattgccaatagctgccaaaacacttgg 31679294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 7 - 125
Target Start/End: Original strand, 826199 - 826317
Alignment:
Q  7 gtgataataacaacacgcgaacaaaaagttgcagaggtcgcatgcacatttcctattcataaattagaacctctatctgatgatgattgttggactttac 106  Q
    ||||| || ||||||||| |  ||| |||||||||||| |||   || | ||||||||||||||| ||||||||||| || ||  |||||||| ||||||    
T  826199 gtgatcatcacaacacgctacgaaagagttgcagaggttgcacatacgtatcctattcataaattggaacctctatcggacgaacattgttggtctttac 826298  T
Q  107 tctcgaagcatgcatttgg 125  Q
    |||| ||| ||||||||||    
T  826299 tctccaagtatgcatttgg 826317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 147 - 215
Target Start/End: Original strand, 826330 - 826398
Alignment:
Q  147 taaatacccaaagctagaagagattggcaggaagattgctagaaagtgtggtggattgccgatagctgc 215  Q
    |||||||||||   ||||||  ||||| | ||||||||| | |||||||||||||||||| ||||||||    
T  826330 taaatacccaaccttagaagcaattgggaagaagattgcaaaaaagtgtggtggattgccaatagctgc 826398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0083 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0083
Description:

Target: scaffold0083; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 163 - 224
Target Start/End: Complemental strand, 58045 - 57984
Alignment:
Q  163 gaagagattggcaggaagattgctagaaagtgtggtggattgccgatagctgcaaaagcact 224  Q
    ||||| ||||||||||||||||| |||| |||||| |||||||| |||||||| ||| ||||    
T  58045 gaagaaattggcaggaagattgcaagaaggtgtgggggattgccaatagctgctaaaacact 57984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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