View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9306_low_56 (Length: 216)

Name: NF9306_low_56
Description: NF9306
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9306_low_56
NF9306_low_56
[»] chr5 (8 HSPs)
chr5 (14-198)||(13414013-13414199)
chr5 (14-113)||(13426973-13427072)
chr5 (21-82)||(13447595-13447656)
chr5 (15-79)||(13388782-13388846)
chr5 (21-113)||(13420043-13420135)
chr5 (24-79)||(13393158-13393213)
chr5 (30-85)||(13409248-13409303)
chr5 (17-79)||(13384946-13385008)


Alignment Details
Target: chr5 (Bit Score: 168; Significance: 3e-90; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 168; E-Value: 3e-90
Query Start/End: Original strand, 14 - 198
Target Start/End: Original strand, 13414013 - 13414199
Alignment:
Q  14 atggacatcagagtgacatatcccacaatacaacaccttgaatgctacatctttttcaccagtttccctaaaattttggtgtaccaaagttgaattaatt 113  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13414013 atggagatcagagtgacatatcccacaatacaacaccttgaatgctacatctttttcaccagtttccctaaaattttggtgtaccaaagttgaattaatt 13414112  T
Q  114 tgtatccagaaacaagatctaaacatttaagggtgttcccattgaagtttggtttaattatgagac--aaaataattccatctaaat 198  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||| ||||||||    
T  13414113 tgtatccagaaacaagatctaaacatttaagggtgttcccattgaagtttggtttaattatgagacaaaaaataattcaatctaaat 13414199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 14 - 113
Target Start/End: Original strand, 13426973 - 13427072
Alignment:
Q  14 atggacatcagagtgacatatcccacaatacaacaccttgaatgctacatctttttcaccagtttccctaaaattttggtgtaccaaagttgaattaatt 113  Q
    ||||| ||||| ||||||||| |||||||||||||||||||||||||||||||| ||||| ||||||||||| ||||| || | ||||||| ||||||||    
T  13426973 atggagatcagtgtgacatataccacaatacaacaccttgaatgctacatctttctcacctgtttccctaaagttttgatgcatcaaagttaaattaatt 13427072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 21 - 82
Target Start/End: Original strand, 13447595 - 13447656
Alignment:
Q  21 tcagagtgacatatcccacaatacaacaccttgaatgctacatctttttcaccagtttccct 82  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||| ||||| ||||||||    
T  13447595 tcagagtgacatatcccacaatataacaccttgaatgctacatctttctcacccgtttccct 13447656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 15 - 79
Target Start/End: Complemental strand, 13388846 - 13388782
Alignment:
Q  15 tggacatcagagtgacatatcccacaatacaacaccttgaatgctacatctttttcaccagtttc 79  Q
    |||||||| ||||||||||||||||||||||| |  |||||||| ||||||||||||||||||||    
T  13388846 tggacatctgagtgacatatcccacaatacaatattttgaatgccacatctttttcaccagtttc 13388782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 21 - 113
Target Start/End: Original strand, 13420043 - 13420135
Alignment:
Q  21 tcagagtgacatatcccacaatacaacaccttgaatgctacatctttttcaccagtttccctaaaattttggtgtaccaaagttgaattaatt 113  Q
    |||| ||| ||||| |||||||||| ||||||||| ||||||||||| ||||||||||||||||| ||||| || | |||  |||||||||||    
T  13420043 tcagtgtggcatataccacaatacatcaccttgaacgctacatctttctcaccagtttccctaaagttttgatgcatcaagattgaattaatt 13420135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 24 - 79
Target Start/End: Complemental strand, 13393213 - 13393158
Alignment:
Q  24 gagtgacatatcccacaatacaacaccttgaatgctacatctttttcaccagtttc 79  Q
    ||||||||||||||||||||||  || || ||||| |||||||||||||| |||||    
T  13393213 gagtgacatatcccacaatacagtactttaaatgccacatctttttcacccgtttc 13393158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 30 - 85
Target Start/End: Complemental strand, 13409303 - 13409248
Alignment:
Q  30 catatcccacaatacaacaccttgaatgctacatctttttcaccagtttccctaaa 85  Q
    ||||| || ||||||||||| |||||||| |||||||| ||||| |||||||||||    
T  13409303 catattccgcaatacaacactttgaatgccacatctttctcacctgtttccctaaa 13409248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 17 - 79
Target Start/End: Complemental strand, 13385008 - 13384946
Alignment:
Q  17 gacatcagagtgacatatcccacaatacaacaccttgaatgctacatctttttcaccagtttc 79  Q
    |||||| ||||||||||| ||||||||||| |  |||||||| ||||||||||| || |||||    
T  13385008 gacatctgagtgacatattccacaatacaatattttgaatgccacatctttttctcctgtttc 13384946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University