View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9306_low_9 (Length: 461)
Name: NF9306_low_9
Description: NF9306
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9306_low_9 |
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Alignment Details
Target: chr2 (Bit Score: 364; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 364; E-Value: 0
Query Start/End: Original strand, 17 - 454
Target Start/End: Complemental strand, 12077130 - 12076687
Alignment:
| Q |
17 |
agtatctttgtcttttttccattacggggtacccttgtcttgttcattagcttttttataaatccattttcttatcaaattcaatgttatagaaatccta |
116 |
Q |
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| T |
12077130 |
agtatctttgtcttttttccattacggggtacccttgtcttgttcattagcttttttataaatccattttcttatcaaattcaatgttatagaaatccta |
12077031 |
T |
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| Q |
117 |
catcatcagtttatggattcagctgtcaattaaatgtat----taatctacctttatttgattataatagtttttgttagtnnnnnnnntataagaggga |
212 |
Q |
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| T |
12077030 |
catcatcagtttatggattccgctgtcaattaaatgtatatattaatctacctttatttgattataatagtttttgttagtaaaaaaaaaataagaggga |
12076931 |
T |
|
| Q |
213 |
acaatttggaataggtttttctctcatgcaatgtcaagtatccaactttttgtttagattgttggctttatttaccgcttcaaagtgatataactaaatt |
312 |
Q |
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| T |
12076930 |
acaatttgtaataggtttttctctcatgcaatgtcaagtatccaactttttgtttagattgttggctttatttaccgcttcaaagtggtataactaaatt |
12076831 |
T |
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| Q |
313 |
caattatgaaaaga--ctatgtcgttctaaagactaacaactgtaaaaaagaaacaaggaattagaagattgtgacattttcacacatgcttttggggga |
410 |
Q |
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| T |
12076830 |
caattatgaaaagactctatgtcgttctaaagactaaccactgtaaaagagaaacaaggaattagaagattgtgacattttcacacatgcttttggggga |
12076731 |
T |
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| Q |
411 |
tgtgattgtgacgttattgataataattacctgatcaactccaa |
454 |
Q |
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| T |
12076730 |
tgcgattgtgacgttattgataataattacctgatcaactccaa |
12076687 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 128; E-Value: 5e-66
Query Start/End: Original strand, 18 - 251
Target Start/End: Complemental strand, 12062282 - 12062049
Alignment:
| Q |
18 |
gtatctttgtcttttttccattacggggtacccttgtcttgttcattagcttttttataaatccattttcttatcaaattcaatgttatagaaatcctac |
117 |
Q |
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| T |
12062282 |
gtatcttcgtcttttttccattacggggtaccctcgtcttgttcattagcttttttataaatccattttcttataaaat-caatattatagaaatcctac |
12062184 |
T |
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| Q |
118 |
atcatcagtttatggattcagctgtcaattaaatgtattaatctacctttatttgattataatagtttttgt--tagtnnnnnnnntataagagggaaca |
215 |
Q |
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| T |
12062183 |
ttcatcggtttatggattccgctgtcaattaactgtattaatctacctttattttattataatagttattgttatagt-aaaagaatacaagagagaacg |
12062085 |
T |
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| Q |
216 |
atttggaataggtttttctctcatgcaatgtcaagt |
251 |
Q |
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| T |
12062084 |
atttggaatagattttgctctcatgcaatgtcaagt |
12062049 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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