View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9307_high_3 (Length: 288)
Name: NF9307_high_3
Description: NF9307
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9307_high_3 |
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Alignment Details
Target: chr4 (Bit Score: 218; Significance: 1e-120; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 53 - 282
Target Start/End: Complemental strand, 37232162 - 37231933
Alignment:
| Q |
53 |
ataataatagagtaagaagtaagtaccttgtgtatgaattcttctgttatttgagcaccatgaacagcttgttttgatgcactttcaacaaccaccgcta |
152 |
Q |
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| T |
37232162 |
ataataatagagtaagaagtaagtaccttgtgtatgaattcttctgttatttgagcaccatgaacagcttgttttgatgcactttctacaaccaccgcta |
37232063 |
T |
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| Q |
153 |
ctttctttagcttagcatcctcaggaagcatctctgctaaatcctcacttaccttctctgctacggttgcaactttttctactacttctgccactttttc |
252 |
Q |
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| T |
37232062 |
ctttctttagcttagcatcctcaggaagcgtctctgctaaatcctcacttaccttctctgctacggttgcaactttttctactacttctgccactttttc |
37231963 |
T |
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| Q |
253 |
aaccccttcaatcacaatctctgctactcc |
282 |
Q |
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||||||||||||||||||||||||| |||| |
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| T |
37231962 |
aaccccttcaatcacaatctctgcttctcc |
37231933 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 18 - 63
Target Start/End: Original strand, 37230600 - 37230645
Alignment:
| Q |
18 |
gatgacaaaagaaaggcctaatttcaacaagcaacataataataga |
63 |
Q |
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| T |
37230600 |
gatgacaaaagaaaggcctaatttcaacaagcaacataataataga |
37230645 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 78 - 139
Target Start/End: Complemental strand, 37240164 - 37240103
Alignment:
| Q |
78 |
ccttgtgtatgaattcttctgttatttgagcaccatgaacagcttgttttgatgcactttca |
139 |
Q |
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|||||||| |||||||| |||||| || |||||||||||| | |||||||||||||||||| |
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| T |
37240164 |
ccttgtgtgtgaattctactgttagttatgcaccatgaacaacatgttttgatgcactttca |
37240103 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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