View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9307_low_1 (Length: 720)
Name: NF9307_low_1
Description: NF9307
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9307_low_1 |
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Alignment Details
Target: chr5 (Bit Score: 331; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 331; E-Value: 0
Query Start/End: Original strand, 9 - 404
Target Start/End: Original strand, 43366624 - 43367016
Alignment:
| Q |
9 |
agaagcaaagggaagatattagcaacataacaaaaaatgcatnnnnnnngaaggtgagaacattgtttgattaccggaatgtgaaatggggattgctgat |
108 |
Q |
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| T |
43366624 |
agaaacaaaaggaagatattagcaacataacaaaaaatgaataaaaa---aaggtgagaacattgtttgattaccggaatgtgaaatggggattgctgat |
43366720 |
T |
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| Q |
109 |
gagaatctaaacgagatttaaccaaatcattatcctgaaatacaatcaaagttacacacagcagcagaatggaatgaggaatgtaattgaagtagaagga |
208 |
Q |
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| T |
43366721 |
gagaatctaaacgagatttaaccaaatcattatcctgaaatacaatcaaagttacacacagcagcaaaatggaatgaggaatgtaattgaagtagaagga |
43366820 |
T |
|
| Q |
209 |
tgaagagcatttacaataaaaggggaaggagcgaagagagagagcatgatgaaaagaaggagaaggcagacggagatggcggaaatgaggaggcggtgaa |
308 |
Q |
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| T |
43366821 |
tgaagagcatttacaataaaaggggaaggagcgaagagagagagcatgatgaaaagaaagagaaggcagacggagatggaggaaatgaggaggcgatgaa |
43366920 |
T |
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| Q |
309 |
tgagacgacggcggaggaaactggcaagaaggagtccgatgagtcttctggacttgtctgtcttctttctcttcactgatgatggtgtatgcatca |
404 |
Q |
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| T |
43366921 |
tgagacgacggcggaggaaactggaaagaaggagtccgatgagtcttctggacttgtctgtcttctttctcttcactgatgatggtttatgcatca |
43367016 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 147; E-Value: 4e-77
Query Start/End: Original strand, 438 - 642
Target Start/End: Original strand, 43367042 - 43367260
Alignment:
| Q |
438 |
gaatgaatattaattacagtttggtgtatgtat--------atatgtgttagctagtgatgatattaatatgtaatgcatggagtaatgtaatgtacgtt |
529 |
Q |
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| T |
43367042 |
gaatgaatattaattacagtttggtgtatgtatgtatgtatatatgtgttagctagtgatgata---atatgtaatgcatggagtaatgtaatgtacgtt |
43367138 |
T |
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| Q |
530 |
attgatta---------ttataattgtgtttgcaattacagttacgacaaatgcatggaattagaggtagaagaagaatgagatgaatatgtgttgtagt |
620 |
Q |
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| T |
43367139 |
attgattattattattattataattgtgtttgcaattacagttacgacaaatgcatggaattagaggtagaagaagaatgagatgaatatgtgttgtagt |
43367238 |
T |
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| Q |
621 |
tagaatttccataatgcgtgtg |
642 |
Q |
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| T |
43367239 |
tagaatttccataatgcgtgtg |
43367260 |
T |
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