View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9307_low_11 (Length: 253)

Name: NF9307_low_11
Description: NF9307
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9307_low_11
NF9307_low_11
[»] chr7 (9 HSPs)
chr7 (191-253)||(145515-145577)
chr7 (189-253)||(5458073-5458136)
chr7 (190-253)||(45046217-45046279)
chr7 (191-253)||(39926540-39926601)
chr7 (196-253)||(18714451-18714507)
chr7 (192-253)||(39280820-39280880)
chr7 (193-249)||(37864425-37864480)
chr7 (193-253)||(43539106-43539165)
chr7 (193-249)||(46987086-46987141)
[»] chr4 (10 HSPs)
chr4 (189-249)||(32139335-32139395)
chr4 (190-253)||(7230277-7230339)
chr4 (190-253)||(19731131-19731194)
chr4 (190-253)||(47814253-47814315)
chr4 (192-249)||(7371554-7371610)
chr4 (191-253)||(5924647-5924708)
chr4 (190-243)||(36203233-36203285)
chr4 (196-249)||(49308823-49308875)
chr4 (193-253)||(19479479-19479538)
chr4 (193-249)||(32200807-32200863)
[»] chr1 (9 HSPs)
chr1 (189-253)||(563197-563260)
chr1 (192-252)||(19620575-19620634)
chr1 (190-253)||(8269370-8269432)
chr1 (190-253)||(26755613-26755675)
chr1 (192-253)||(5907798-5907858)
chr1 (193-253)||(19795118-19795178)
chr1 (190-253)||(6423763-6423826)
chr1 (193-251)||(12213993-12214050)
chr1 (192-249)||(38448872-38448928)
[»] chr8 (8 HSPs)
chr8 (95-166)||(21550876-21550946)
chr8 (7-62)||(21550995-21551050)
chr8 (190-253)||(10752405-10752468)
chr8 (193-253)||(24195249-24195308)
chr8 (190-253)||(27587218-27587280)
chr8 (190-253)||(27718896-27718958)
chr8 (192-249)||(19778064-19778120)
chr8 (193-253)||(7996940-7996999)
[»] chr5 (8 HSPs)
chr5 (190-253)||(4009863-4009926)
chr5 (190-251)||(32200451-32200511)
chr5 (189-253)||(13864340-13864403)
chr5 (190-249)||(6624773-6624831)
chr5 (190-253)||(40715951-40716013)
chr5 (190-252)||(3445250-3445311)
chr5 (189-249)||(8544995-8545054)
chr5 (193-249)||(39782884-39782940)
[»] chr2 (6 HSPs)
chr2 (190-253)||(35456822-35456885)
chr2 (190-253)||(42791292-42791354)
chr2 (191-253)||(25186244-25186305)
chr2 (192-249)||(24593375-24593431)
chr2 (192-248)||(39068715-39068770)
chr2 (190-242)||(40032880-40032932)
[»] chr6 (9 HSPs)
chr6 (191-253)||(33824879-33824940)
chr6 (193-253)||(15187063-15187122)
chr6 (193-253)||(15473484-15473543)
chr6 (190-253)||(8917596-8917659)
chr6 (190-245)||(18256880-18256934)
chr6 (191-253)||(5040835-5040896)
chr6 (191-252)||(3863336-3863397)
chr6 (192-249)||(4450261-4450317)
chr6 (191-252)||(6365984-6366044)
[»] chr3 (7 HSPs)
chr3 (189-253)||(27185473-27185536)
chr3 (190-253)||(35863815-35863877)
chr3 (190-252)||(12043099-12043161)
chr3 (191-253)||(26941697-26941759)
chr3 (192-253)||(55126005-55126065)
chr3 (193-249)||(23147984-23148039)
chr3 (192-252)||(47099038-47099097)
[»] scaffold0983 (1 HSPs)
scaffold0983 (190-253)||(3317-3379)


Alignment Details
Target: chr7 (Bit Score: 47; Significance: 6e-18; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 191 - 253
Target Start/End: Original strand, 145515 - 145577
Alignment:
Q  191 tcgtgagcttagctcagttgacaagtacaacacattaatatatgcaaggtccggggttcaaac 253  Q
    |||||||||||| |||||||  ||| |||||||||||||||||||||||||||||||||||||    
T  145515 tcgtgagcttagttcagttggtaaggacaacacattaatatatgcaaggtccggggttcaaac 145577  T

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Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 189 - 253
Target Start/End: Complemental strand, 5458136 - 5458073
Alignment:
Q  189 tctcgtgagcttagctcagttgacaagtacaacacattaatatatgcaaggtccggggttcaaac 253  Q
    ||||||||||||||||||||||| ||| ||||  || |||||||||||||||| ||| |||||||    
T  5458136 tctcgtgagcttagctcagttgataagaacaatgca-taatatatgcaaggtctgggattcaaac 5458073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 190 - 253
Target Start/End: Complemental strand, 45046279 - 45046217
Alignment:
Q  190 ctcgtgagcttagctcagttgacaagtacaacacattaatatatgcaaggtccggggttcaaac 253  Q
    ||||||||| |||||||||||| | | |||  |||| |||||||||||||||||||||||||||    
T  45046279 ctcgtgagcatagctcagttgatatggacagtacat-aatatatgcaaggtccggggttcaaac 45046217  T

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Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 191 - 253
Target Start/End: Complemental strand, 39926601 - 39926540
Alignment:
Q  191 tcgtgagcttagctcagttgacaagtacaacacattaatatatgcaaggtccggggttcaaac 253  Q
    ||||||||||||||||||||| ||| ||||  || |||||||||||| || ||||||||||||    
T  39926601 tcgtgagcttagctcagttgataaggacaatgca-taatatatgcaatgttcggggttcaaac 39926540  T

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Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 196 - 253
Target Start/End: Original strand, 18714451 - 18714507
Alignment:
Q  196 agcttagctcagttgacaagtacaacacattaatatatgcaaggtccggggttcaaac 253  Q
    |||||||||||||||  ||| ||||  ||| |||||||||||||||||||||||||||    
T  18714451 agcttagctcagttggtaaggacaatgcat-aatatatgcaaggtccggggttcaaac 18714507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 192 - 253
Target Start/End: Complemental strand, 39280880 - 39280820
Alignment:
Q  192 cgtgagcttagctcagttgacaagtacaacacattaatatatgcaaggtccggggttcaaac 253  Q
    ||||| |||||||||||||  ||| ||||  ||| |||||||||||||||||||||||||||    
T  39280880 cgtgaacttagctcagttggtaagaacaatgcat-aatatatgcaaggtccggggttcaaac 39280820  T

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Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 193 - 249
Target Start/End: Original strand, 37864425 - 37864480
Alignment:
Q  193 gtgagcttagctcagttgacaagtacaacacattaatatatgcaaggtccggggttc 249  Q
    ||||||||||||||||||  ||||||||  || |||||||||||||||| |||||||    
T  37864425 gtgagcttagctcagttggtaagtacaatgca-taatatatgcaaggtctggggttc 37864480  T

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Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 193 - 253
Target Start/End: Complemental strand, 43539165 - 43539106
Alignment:
Q  193 gtgagcttagctcagttgacaagtacaacacattaatatatgcaaggtccggggttcaaac 253  Q
    ||||||||||||||||||| | | ||||  ||| |||||||| ||||||||||||||||||    
T  43539165 gtgagcttagctcagttgataggaacaatgcat-aatatatgtaaggtccggggttcaaac 43539106  T

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Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 193 - 249
Target Start/End: Original strand, 46987086 - 46987141
Alignment:
Q  193 gtgagcttagctcagttgacaagtacaacacattaatatatgcaaggtccggggttc 249  Q
    ||||||||||||||||||  ||| ||||  ||| |||||||||||||||||||||||    
T  46987086 gtgagcttagctcagttggtaaggacaatgcat-aatatatgcaaggtccggggttc 46987141  T

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Target: chr4 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 189 - 249
Target Start/End: Original strand, 32139335 - 32139395
Alignment:
Q  189 tctcgtgagcttagctcagttgacaagtacaacacattaatatatgcaaggtccggggttc 249  Q
    ||||||||||||||||||||||| | | |||| |||| |||||||||||||||||||||||    
T  32139335 tctcgtgagcttagctcagttgatagggacaatacataaatatatgcaaggtccggggttc 32139395  T

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Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 190 - 253
Target Start/End: Original strand, 7230277 - 7230339
Alignment:
Q  190 ctcgtgagcttagctcagttgacaagtacaacacattaatatatgcaaggtccggggttcaaac 253  Q
    |||||||||||||||||||||  ||| ||||  ||| |||||||||||||||||||||||||||    
T  7230277 ctcgtgagcttagctcagttggtaaggacaatgcat-aatatatgcaaggtccggggttcaaac 7230339  T

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Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 190 - 253
Target Start/End: Complemental strand, 19731194 - 19731131
Alignment:
Q  190 ctcgtgagcttagctcagttgacaagtacaacacattaatatatgcaaggtccggggttcaaac 253  Q
    ||||||||||||||||| |||  ||| ||||  |||||||||||||||||| ||||||||||||    
T  19731194 ctcgtgagcttagctcaattggtaaggacaatgcattaatatatgcaaggttcggggttcaaac 19731131  T

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Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 190 - 253
Target Start/End: Complemental strand, 47814315 - 47814253
Alignment:
Q  190 ctcgtgagcttagctcagttgacaagtacaacacattaatatatgcaaggtccggggttcaaac 253  Q
    ||||| |||||||||||||||  | | ||||||||| |||||||||||||||||||||||||||    
T  47814315 ctcgtaagcttagctcagttggtatggacaacacat-aatatatgcaaggtccggggttcaaac 47814253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 192 - 249
Target Start/End: Complemental strand, 7371610 - 7371554
Alignment:
Q  192 cgtgagcttagctcagttgacaagtacaacacattaatatatgcaaggtccggggttc 249  Q
    |||||||||| ||||||||| ||| |||| |||| |||||||||||||||||||||||    
T  7371610 cgtgagcttaactcagttgataaggacaatacat-aatatatgcaaggtccggggttc 7371554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 191 - 253
Target Start/End: Original strand, 5924647 - 5924708
Alignment:
Q  191 tcgtgagcttagctcagttgacaagtacaacacattaatatatgcaaggtccggggttcaaac 253  Q
    ||||||||||||||||||||  | | |||| |||| |||||||| ||||||||||||||||||    
T  5924647 tcgtgagcttagctcagttgctatggacaatacat-aatatatggaaggtccggggttcaaac 5924708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 190 - 243
Target Start/End: Original strand, 36203233 - 36203285
Alignment:
Q  190 ctcgtgagcttagctcagttgacaagtacaacacattaatatatgcaaggtccg 243  Q
    |||||||||||||||||||||| ||| ||||  || ||||||||||||||||||    
T  36203233 ctcgtgagcttagctcagttgataaggacaatgca-taatatatgcaaggtccg 36203285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 196 - 249
Target Start/End: Original strand, 49308823 - 49308875
Alignment:
Q  196 agcttagctcagttgacaagtacaacacattaatatatgcaaggtccggggttc 249  Q
    |||||||||||||||||||| ||||  || |||||||||||||||| |||||||    
T  49308823 agcttagctcagttgacaaggacaatgca-taatatatgcaaggtctggggttc 49308875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 193 - 253
Target Start/End: Complemental strand, 19479538 - 19479479
Alignment:
Q  193 gtgagcttagctcagttgacaagtacaacacattaatatatgcaaggtccggggttcaaac 253  Q
    ||||||||||||||||| | | | ||||  || ||||||||||||||||||||||||||||    
T  19479538 gtgagcttagctcagttaatatgaacaatgca-taatatatgcaaggtccggggttcaaac 19479479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 193 - 249
Target Start/End: Complemental strand, 32200863 - 32200807
Alignment:
Q  193 gtgagcttagctcagttgacaagtacaacacattaatatatgcaaggtccggggttc 249  Q
    ||||||||| ||||||||| ||  | ||||||| |||||||||||||| ||||||||    
T  32200863 gtgagcttatctcagttgataaagataacacataaatatatgcaaggttcggggttc 32200807  T

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Target: chr1 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 189 - 253
Target Start/End: Original strand, 563197 - 563260
Alignment:
Q  189 tctcgtgagcttagctcagttgacaagtacaacacattaatatatgcaaggtccggggttcaaac 253  Q
    ||||||||||||||||||||||| ||| |||| ||| ||||||||||||||||||| ||||||||    
T  563197 tctcgtgagcttagctcagttgataaggacaaaaca-taatatatgcaaggtccggagttcaaac 563260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 192 - 252
Target Start/End: Original strand, 19620575 - 19620634
Alignment:
Q  192 cgtgagcttagctcagttgacaagtacaacacattaatatatgcaaggtccggggttcaaa 252  Q
    |||||||||||||||||||  ||| |||| |||| ||||||||||||||||||||||||||    
T  19620575 cgtgagcttagctcagttggtaaggacaatacat-aatatatgcaaggtccggggttcaaa 19620634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 190 - 253
Target Start/End: Complemental strand, 8269432 - 8269370
Alignment:
Q  190 ctcgtgagcttagctcagttgacaagtacaacacattaatatatgcaaggtccggggttcaaac 253  Q
    ||||||| |||||||||||||  ||| |||| |||| |||||||||||||||||||||||||||    
T  8269432 ctcgtgaacttagctcagttggtaaggacaatacat-aatatatgcaaggtccggggttcaaac 8269370  T

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Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 190 - 253
Target Start/End: Original strand, 26755613 - 26755675
Alignment:
Q  190 ctcgtgagcttagctcagttgacaagtacaacacattaatatatgcaaggtccggggttcaaac 253  Q
    |||||||||||||||||||||| | | ||||  ||||| |||||||||||||||||||||||||    
T  26755613 ctcgtgagcttagctcagttgatatggacaatgcatta-tatatgcaaggtccggggttcaaac 26755675  T

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Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 192 - 253
Target Start/End: Original strand, 5907798 - 5907858
Alignment:
Q  192 cgtgagcttagctcagttgacaagtacaacacattaatatatgcaaggtccggggttcaaac 253  Q
    ||||||||||||||||||| |||| ||||  ||| |||||||||||||||| ||||||||||    
T  5907798 cgtgagcttagctcagttggcaaggacaatgcat-aatatatgcaaggtccagggttcaaac 5907858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 193 - 253
Target Start/End: Complemental strand, 19795178 - 19795118
Alignment:
Q  193 gtgagcttagctcagttgacaagtacaacacattaatatatgcaaggtccggggttcaaac 253  Q
    ||||||||||||||||||  ||| ||    |||||||||||||||||||||||||||||||    
T  19795178 gtgagcttagctcagttggtaagaaccttgcattaatatatgcaaggtccggggttcaaac 19795118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 190 - 253
Target Start/End: Complemental strand, 6423826 - 6423763
Alignment:
Q  190 ctcgtgagcttagctcagttgacaagtacaacacattaatatatgcaaggtccggggttcaaac 253  Q
    |||||||||||| ||||||||  | | ||||  |||| ||||||||||||||||||||||||||    
T  6423826 ctcgtgagcttaactcagttggtatgaacaatgcatttatatatgcaaggtccggggttcaaac 6423763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 193 - 251
Target Start/End: Original strand, 12213993 - 12214050
Alignment:
Q  193 gtgagcttagctcagttgacaagtacaacacattaatatatgcaaggtccggggttcaa 251  Q
    ||||||||||||||||||| | | |||| |||| ||||||||||||||| |||||||||    
T  12213993 gtgagcttagctcagttgataggaacaatacat-aatatatgcaaggtctggggttcaa 12214050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 192 - 249
Target Start/End: Complemental strand, 38448928 - 38448872
Alignment:
Q  192 cgtgagcttagctcagttgacaagtacaacacattaatatatgcaaggtccggggttc 249  Q
    |||||||||||||||||||  ||| ||||  ||| |||||||||||||||||||||||    
T  38448928 cgtgagcttagctcagttggtaaggacaatgcat-aatatatgcaaggtccggggttc 38448872  T

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Target: chr8 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 95 - 166
Target Start/End: Complemental strand, 21550946 - 21550876
Alignment:
Q  95 tgtacatttattttttcttatccactactattgatctgtggagagttgtcaaagactgttgaatttcacaac 166  Q
    ||||||||||||||||| | |||||||||  |||| | |||||||||||||||||| |||||||||||||||    
T  21550946 tgtacatttattttttcat-tccactactgctgatttatggagagttgtcaaagaccgttgaatttcacaac 21550876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 7 - 62
Target Start/End: Complemental strand, 21551050 - 21550995
Alignment:
Q  7 tttttaactctatctatgcagttttgacacctttcttctggtatggatgatttata 62  Q
    ||||||||||||||||||||||||| ||||| ||||||||||||| | ||||||||    
T  21551050 tttttaactctatctatgcagtttttacacccttcttctggtatgaaagatttata 21550995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 190 - 253
Target Start/End: Original strand, 10752405 - 10752468
Alignment:
Q  190 ctcgtgagcttagctcagttgacaagtacaacacattaatatatgcaaggtccggggttcaaac 253  Q
    |||||||||||||||||||||  ||| |||| ||||| |||||| ||||||| |||||||||||    
T  10752405 ctcgtgagcttagctcagttggtaaggacaaaacattgatatattcaaggtctggggttcaaac 10752468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 193 - 253
Target Start/End: Original strand, 24195249 - 24195308
Alignment:
Q  193 gtgagcttagctcagttgacaagtacaacacattaatatatgcaaggtccggggttcaaac 253  Q
    |||| |||||||||||||| | | |||| |||| |||||||||||||||||||||||||||    
T  24195249 gtgaacttagctcagttgatatgaacaatacat-aatatatgcaaggtccggggttcaaac 24195308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 190 - 253
Target Start/End: Original strand, 27587218 - 27587280
Alignment:
Q  190 ctcgtgagcttagctcagttgacaagtacaacacattaatatatgcaaggtccggggttcaaac 253  Q
    |||||||||||||||||||||  ||| ||||  ||| | |||||||||||||||||||||||||    
T  27587218 ctcgtgagcttagctcagttggtaaggacaatgcatga-tatatgcaaggtccggggttcaaac 27587280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 190 - 253
Target Start/End: Complemental strand, 27718958 - 27718896
Alignment:
Q  190 ctcgtgagcttagctcagttgacaagtacaacacattaatatatgcaaggtccggggttcaaac 253  Q
    |||||||||||||||||||||| | | ||||  ||| |||||||||||||||||| ||||||||    
T  27718958 ctcgtgagcttagctcagttgatatggacaatgcat-aatatatgcaaggtccggagttcaaac 27718896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 192 - 249
Target Start/End: Original strand, 19778064 - 19778120
Alignment:
Q  192 cgtgagcttagctcagttgacaagtacaacacattaatatatgcaaggtccggggttc 249  Q
    |||||||||||||||||||  ||| ||||  ||| |||||||||||||||||||||||    
T  19778064 cgtgagcttagctcagttggtaaggacaatgcat-aatatatgcaaggtccggggttc 19778120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 193 - 253
Target Start/End: Original strand, 7996940 - 7996999
Alignment:
Q  193 gtgagcttagctcagttgacaagtacaacacattaatatatgcaaggtccggggttcaaac 253  Q
    ||||||||||||||||||  | | ||||| ||| ||||||||||||||| |||||||||||    
T  7996940 gtgagcttagctcagttggtatggacaacgcat-aatatatgcaaggtctggggttcaaac 7996999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 190 - 253
Target Start/End: Original strand, 4009863 - 4009926
Alignment:
Q  190 ctcgtgagcttagctcagttgacaagtacaacacattaatatatgcaaggtccggggttcaaac 253  Q
    |||||||||||||||||||||  ||| ||||  ||||||||||||||||| |||||||||||||    
T  4009863 ctcgtgagcttagctcagttggtaaggacaatgcattaatatatgcaagggccggggttcaaac 4009926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 190 - 251
Target Start/End: Complemental strand, 32200511 - 32200451
Alignment:
Q  190 ctcgtgagcttagctcagttgacaagtacaacacattaatatatgcaaggtccggggttcaa 251  Q
    |||||||||||||||||||||||| | ||||  ||| |||||||||||||||||||||||||    
T  32200511 ctcgtgagcttagctcagttgacagggacaatgcat-aatatatgcaaggtccggggttcaa 32200451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 189 - 253
Target Start/End: Original strand, 13864340 - 13864403
Alignment:
Q  189 tctcgtgagcttagctcagttgacaagtacaacacattaatatatgcaaggtccggggttcaaac 253  Q
    ||||||||||||| ||||||||  | | |||| |||| |||||||||||||||||||||||||||    
T  13864340 tctcgtgagcttaactcagttggtatgaacaatacat-aatatatgcaaggtccggggttcaaac 13864403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 190 - 249
Target Start/End: Original strand, 6624773 - 6624831
Alignment:
Q  190 ctcgtgagcttagctcagttgacaagtacaacacattaatatatgcaaggtccggggttc 249  Q
    ||||||||||||||||||||| || | ||||  ||| |||||||||||||||||||||||    
T  6624773 ctcgtgagcttagctcagttggcatggacaatgcat-aatatatgcaaggtccggggttc 6624831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 190 - 253
Target Start/End: Complemental strand, 40716013 - 40715951
Alignment:
Q  190 ctcgtgagcttagctcagttgacaagtacaacacattaatatatgcaaggtccggggttcaaac 253  Q
    ||||||||||||||||| |||| | | ||||  ||| |||||||||||||||||||||||||||    
T  40716013 ctcgtgagcttagctcaattgatatggacaatgcat-aatatatgcaaggtccggggttcaaac 40715951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 190 - 252
Target Start/End: Complemental strand, 3445311 - 3445250
Alignment:
Q  190 ctcgtgagcttagctcagttgacaagtacaacacattaatatatgcaaggtccggggttcaaa 252  Q
    |||||||||||||||||||||  ||| ||||  ||| ||| ||||||||||||||||||||||    
T  3445311 ctcgtgagcttagctcagttggtaaggacaatgcat-aatgtatgcaaggtccggggttcaaa 3445250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 189 - 249
Target Start/End: Complemental strand, 8545054 - 8544995
Alignment:
Q  189 tctcgtgagcttagctcagttgacaagtacaacacattaatatatgcaaggtccggggttc 249  Q
    ||||||||||||| ||||||||| ||| ||||  ||| |||||||||||||||||| ||||    
T  8545054 tctcgtgagcttaactcagttgataaggacaatgcat-aatatatgcaaggtccggagttc 8544995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 193 - 249
Target Start/End: Original strand, 39782884 - 39782940
Alignment:
Q  193 gtgagcttagctcagttgacaagtacaacacattaatatatgcaaggtccggggttc 249  Q
    ||||||||| ||||||||| ||  | ||||||| |||||||||||| ||||||||||    
T  39782884 gtgagcttatctcagttgataaagataacacataaatatatgcaagatccggggttc 39782940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 190 - 253
Target Start/End: Complemental strand, 35456885 - 35456822
Alignment:
Q  190 ctcgtgagcttagctcagttgacaagtacaacacattaatatatgcaaggtccggggttcaaac 253  Q
    |||||||||||||||||||||  ||| ||||  |||||||||||||||||| ||||||||||||    
T  35456885 ctcgtgagcttagctcagttggtaagaacaatgcattaatatatgcaaggttcggggttcaaac 35456822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 190 - 253
Target Start/End: Original strand, 42791292 - 42791354
Alignment:
Q  190 ctcgtgagcttagctcagttgacaagtacaacacattaatatatgcaaggtccggggttcaaac 253  Q
    ||||||||||||||||| |||||  | ||||  ||| |||||||||||||||||||||||||||    
T  42791292 ctcgtgagcttagctcacttgacttggacaatgcat-aatatatgcaaggtccggggttcaaac 42791354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 191 - 253
Target Start/End: Complemental strand, 25186305 - 25186244
Alignment:
Q  191 tcgtgagcttagctcagttgacaagtacaacacattaatatatgcaaggtccggggttcaaac 253  Q
    ||||||| ||||||||||||| | | ||||  ||| |||||||||||||||||||||||||||    
T  25186305 tcgtgagtttagctcagttgatatggacaatgcat-aatatatgcaaggtccggggttcaaac 25186244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 192 - 249
Target Start/End: Original strand, 24593375 - 24593431
Alignment:
Q  192 cgtgagcttagctcagttgacaagtacaacacattaatatatgcaaggtccggggttc 249  Q
    |||||||||||||||||||  ||| ||||  ||| |||||||||||||||||||||||    
T  24593375 cgtgagcttagctcagttggtaaggacaatgcat-aatatatgcaaggtccggggttc 24593431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 192 - 248
Target Start/End: Complemental strand, 39068770 - 39068715
Alignment:
Q  192 cgtgagcttagctcagttgacaagtacaacacattaatatatgcaaggtccggggtt 248  Q
    |||||||||||||||||||| ||| ||||  || ||||||||||||| |||||||||    
T  39068770 cgtgagcttagctcagttgataaggacaatgca-taatatatgcaagatccggggtt 39068715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 190 - 242
Target Start/End: Complemental strand, 40032932 - 40032880
Alignment:
Q  190 ctcgtgagcttagctcagttgacaagtacaacacattaatatatgcaaggtcc 242  Q
    |||||||||||||||||||||  ||| |||   ||||||||||||||||||||    
T  40032932 ctcgtgagcttagctcagttggtaaggacagtgcattaatatatgcaaggtcc 40032880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 35; Significance: 0.00000000009; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 191 - 253
Target Start/End: Original strand, 33824879 - 33824940
Alignment:
Q  191 tcgtgagcttagctcagttgacaagtacaacacattaatatatgcaaggtccggggttcaaac 253  Q
    |||||| |||||||||||||| ||| ||||  ||| |||||||||||||||||||||||||||    
T  33824879 tcgtgatcttagctcagttgataaggacaatgcat-aatatatgcaaggtccggggttcaaac 33824940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 193 - 253
Target Start/End: Original strand, 15187063 - 15187122
Alignment:
Q  193 gtgagcttagctcagttgacaagtacaacacattaatatatgcaaggtccggggttcaaac 253  Q
    ||||||||||||||| ||| ||||||||  ||| ||||||||||||||||| |||||||||    
T  15187063 gtgagcttagctcagctgataagtacaatgcat-aatatatgcaaggtccgaggttcaaac 15187122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 193 - 253
Target Start/End: Complemental strand, 15473543 - 15473484
Alignment:
Q  193 gtgagcttagctcagttgacaagtacaacacattaatatatgcaaggtccggggttcaaac 253  Q
    ||||||||||||||| ||| ||||||||  ||| ||||||||||||||||| |||||||||    
T  15473543 gtgagcttagctcagctgataagtacaatgcat-aatatatgcaaggtccgaggttcaaac 15473484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 190 - 253
Target Start/End: Original strand, 8917596 - 8917659
Alignment:
Q  190 ctcgtgagcttagctcagttgacaagtacaacacattaatatatgcaaggtccggggttcaaac 253  Q
    |||||||||||| |||||||   ||| |||| ||||||||||||| |||||| |||||||||||    
T  8917596 ctcgtgagcttaactcagttagtaaggacaatacattaatatatgtaaggtctggggttcaaac 8917659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 190 - 245
Target Start/End: Original strand, 18256880 - 18256934
Alignment:
Q  190 ctcgtgagcttagctcagttgacaagtacaacacattaatatatgcaaggtccggg 245  Q
    |||||||||||||||||||||| ||| ||||  || ||||||||||||||||||||    
T  18256880 ctcgtgagcttagctcagttgataaggacaatgca-taatatatgcaaggtccggg 18256934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 191 - 253
Target Start/End: Complemental strand, 5040896 - 5040835
Alignment:
Q  191 tcgtgagcttagctcagttgacaagtacaacacattaatatatgcaaggtccggggttcaaac 253  Q
    ||||||||||||||||||||  ||  |||| |||| |||||||||||||||||| ||||||||    
T  5040896 tcgtgagcttagctcagttggtaaagacaaaacat-aatatatgcaaggtccggtgttcaaac 5040835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 191 - 252
Target Start/End: Complemental strand, 3863397 - 3863336
Alignment:
Q  191 tcgtgagcttagctcagttgacaagtacaacacattaatatatgcaaggtccggggttcaaa 252  Q
    ||||||||||| ||||||||  ||| ||||  ||||||||||||||| ||| ||||||||||    
T  3863397 tcgtgagcttaactcagttggtaaggacaatgcattaatatatgcaacgtctggggttcaaa 3863336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 192 - 249
Target Start/End: Original strand, 4450261 - 4450317
Alignment:
Q  192 cgtgagcttagctcagttgacaagtacaacacattaatatatgcaaggtccggggttc 249  Q
    |||||||||||||||||||| ||  ||||  ||| |||||||||||||||||||||||    
T  4450261 cgtgagcttagctcagttgataaagacaatgcat-aatatatgcaaggtccggggttc 4450317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 191 - 252
Target Start/End: Original strand, 6365984 - 6366044
Alignment:
Q  191 tcgtgagcttagctcagttgacaagtacaacacattaatatatgcaaggtccggggttcaaa 252  Q
    ||||||||||||||||||||  ||| |||||| | |||||||||||||||| | ||||||||    
T  6365984 tcgtgagcttagctcagttgttaaggacaacata-taatatatgcaaggtctgaggttcaaa 6366044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 33; Significance: 0.000000001; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 189 - 253
Target Start/End: Original strand, 27185473 - 27185536
Alignment:
Q  189 tctcgtgagcttagctcagttgacaagtacaacacattaatatatgcaaggtccggggttcaaac 253  Q
    ||||||||||||||||||||||  | | |||| |||| ||||||||||||||| |||||||||||    
T  27185473 tctcgtgagcttagctcagttggtagggacaatacat-aatatatgcaaggtctggggttcaaac 27185536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 190 - 253
Target Start/End: Complemental strand, 35863877 - 35863815
Alignment:
Q  190 ctcgtgagcttagctcagttgacaagtacaacacattaatatatgcaaggtccggggttcaaac 253  Q
    ||||| |||||||||||||||  ||| |||| |||| ||||||||||||||| |||||||||||    
T  35863877 ctcgtaagcttagctcagttggtaaggacaatacat-aatatatgcaaggtctggggttcaaac 35863815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 190 - 252
Target Start/End: Complemental strand, 12043161 - 12043099
Alignment:
Q  190 ctcgtgagcttagctcagttgacaagtacaacacattaatatatgcaaggtccggggttcaaa 252  Q
    |||||||||||| ||||||||  ||| ||||  |||||||||||||||||| || ||||||||    
T  12043161 ctcgtgagcttaactcagttggtaaggacaatgcattaatatatgcaaggttcgaggttcaaa 12043099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 191 - 253
Target Start/End: Original strand, 26941697 - 26941759
Alignment:
Q  191 tcgtgagcttagctcagttgacaagtacaacacattaatatatgcaaggtccggggttcaaac 253  Q
    ||||||| ||| ||||||||  ||| ||||  |||||||||||||||||| ||||||||||||    
T  26941697 tcgtgagtttatctcagttgctaagcacaatgcattaatatatgcaaggttcggggttcaaac 26941759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 192 - 253
Target Start/End: Original strand, 55126005 - 55126065
Alignment:
Q  192 cgtgagcttagctcagttgacaagtacaacacattaatatatgcaaggtccggggttcaaac 253  Q
    ||||||||||||||||||||  || |||| ||| ||||||||||||||| || |||||||||    
T  55126005 cgtgagcttagctcagttgatgaggacaataca-taatatatgcaaggttcgaggttcaaac 55126065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 193 - 249
Target Start/End: Complemental strand, 23148039 - 23147984
Alignment:
Q  193 gtgagcttagctcagttgacaagtacaacacattaatatatgcaaggtccggggttc 249  Q
    ||||||||||||||||||  ||| |||| |||| ||||||||| |||||||||||||    
T  23148039 gtgagcttagctcagttggtaaggacaatacat-aatatatgcgaggtccggggttc 23147984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 192 - 252
Target Start/End: Complemental strand, 47099097 - 47099038
Alignment:
Q  192 cgtgagcttagctcagttgacaagtacaacacattaatatatgcaaggtccggggttcaaa 252  Q
    |||||||||||||||||||| ||| | ||  ||| |||||||||||||| |||||||||||    
T  47099097 cgtgagcttagctcagttgataagaataatgcat-aatatatgcaaggttcggggttcaaa 47099038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0983 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0983
Description:

Target: scaffold0983; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 190 - 253
Target Start/End: Complemental strand, 3379 - 3317
Alignment:
Q  190 ctcgtgagcttagctcagttgacaagtacaacacattaatatatgcaaggtccggggttcaaac 253  Q
    ||||||||| |||||||||||  ||| |||| |||| |||||||||||||| ||||||||||||    
T  3379 ctcgtgagcatagctcagttggtaaggacaagacat-aatatatgcaaggttcggggttcaaac 3317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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