View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9307_low_3 (Length: 353)
Name: NF9307_low_3
Description: NF9307
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9307_low_3 |
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Alignment Details
Target: chr8 (Bit Score: 311; Significance: 1e-175; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 311; E-Value: 1e-175
Query Start/End: Original strand, 18 - 336
Target Start/End: Complemental strand, 8705647 - 8705329
Alignment:
| Q |
18 |
caaagttcaaaatttcaaacaatgaatccaataaacatcaaattacagaacagccaatcagagaggaaaattattaaatcctggataaactcatgttttg |
117 |
Q |
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| T |
8705647 |
caaagttcaaaatttcaaacaatgaatccaataaacatcaaattacagaacagccaatcagagaggaaaattattaaatcctggataaactcatgttttg |
8705548 |
T |
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| Q |
118 |
tcatactcatttaaatgaataaataaaaactcaaataaactcatttaaagcctttaatgtaacaaaacaaaccttgtcatcttcaaaggtggtatcatga |
217 |
Q |
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| T |
8705547 |
tcatactcatttaaataaataaataaaaactcaaataaactcatttaaagcctttattgtaacaaaacaaaccttgtcatcttcaaaggtggtatcatga |
8705448 |
T |
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| Q |
218 |
tattcatgaatcacccagctgcttttaacaccaggaacacgaccattgtagtaaacaagagtcttcttaatcccaataatattattgctacccctaacct |
317 |
Q |
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| T |
8705447 |
tattcatgaatcacccagctgcttttaacaccaggaacacgaccattgtagtaaacaagagtcttcttaatcccaataatattattgctacccctaacct |
8705348 |
T |
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| Q |
318 |
taatcttccggtccttacc |
336 |
Q |
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| T |
8705347 |
taatcttccggtccttacc |
8705329 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 176; E-Value: 9e-95
Query Start/End: Original strand, 118 - 333
Target Start/End: Original strand, 14372181 - 14372395
Alignment:
| Q |
118 |
tcatactcatttaaatgaataaataaaaactcaaataaactcatttaaagcctttaatgtaacaaaacaaaccttgtcatcttcaaaggtggtatcatga |
217 |
Q |
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| T |
14372181 |
tcatactcatttaaataaataaataataactcaaataaactcatttaaaacctttattgtaacaaaacaaacctggt-atcttcaaaggtggtatcatga |
14372279 |
T |
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| Q |
218 |
tattcatgaatcacccagctgcttttaacaccaggaacacgaccattgtagtaaacaagagtcttcttaatcccaataatattattgctacccctaacct |
317 |
Q |
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| T |
14372280 |
tattcatgaatcacccggctgcttttaacaccaggaacacgaccattatagtaaacaagagttttcttaatcccaataatattattgctacccctaacct |
14372379 |
T |
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| Q |
318 |
taatcttccggtcctt |
333 |
Q |
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| T |
14372380 |
taatcttccggtcctt |
14372395 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 175 - 330
Target Start/End: Complemental strand, 8691210 - 8691055
Alignment:
| Q |
175 |
tgtaacaaaacaaaccttgtcatcttcaaaggtggtatcatgatattcatgaatcacccagctgcttttaacaccaggaacacgaccattgtagtaaaca |
274 |
Q |
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| T |
8691210 |
tgtaacaaaacaaacctggttatcatgaaaggtggcagaatgatattcatgaatcacccagttgcttttaacaccaggaacacaaccattatagaacaca |
8691111 |
T |
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| Q |
275 |
agagtcttcttaatcccaataatattattgctacccctaaccttaatcttccggtc |
330 |
Q |
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| T |
8691110 |
agtgttttttttatcccaataacattgtcagtgcctctaaccttaatcttacggtc |
8691055 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 171 - 331
Target Start/End: Complemental strand, 8723929 - 8723769
Alignment:
| Q |
171 |
ttaatgtaacaaaacaaaccttgtcatcttcaaaggtggtatcatgatattcatgaatcacccagctgcttttaacaccaggaacacgaccattgtagta |
270 |
Q |
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| T |
8723929 |
ttaatgtaacaaaacaaacctgggaatcctctaaggtgacatcatgatactcatgaatgatccaattggtcttaacaccaggaacatgattctcatggta |
8723830 |
T |
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| Q |
271 |
aacaagagtcttcttaatcccaataatattattgctacccctaaccttaatcttccggtcc |
331 |
Q |
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| T |
8723829 |
aacaagagtcttcttaatcccaataacttcattggtacccctaatcctaatgttacggtcc |
8723769 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 178 - 321
Target Start/End: Complemental strand, 8740563 - 8740420
Alignment:
| Q |
178 |
aacaaaacaaaccttgtcatcttcaaaggtggtatcatgatattcatgaatcacccagctgcttttaacaccaggaacacgaccattgtagtaaacaaga |
277 |
Q |
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|||| ||||||||| || ||| |||||| ||| |||||||||||||||||| | ||| | | ||||||||||||||| || | | | ||||||||| |
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| T |
8740563 |
aacataacaaacctggtgatcatcaaagatggcatcatgatattcatgaatgatccaattagtcttaacaccaggaacaggatcttcatgataaacaaga |
8740464 |
T |
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| Q |
278 |
gtcttcttaatcccaataatattattgctacccctaaccttaat |
321 |
Q |
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| T |
8740463 |
gtcttcttagtcccaataattttattggtacctctaatcttaat |
8740420 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 24 - 100
Target Start/End: Complemental strand, 8724105 - 8724029
Alignment:
| Q |
24 |
tcaaaatttcaaacaatgaatccaataaacatcaaattacagaacagccaatcagagaggaaaattattaaatcctg |
100 |
Q |
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||||| ||||||| |||||||||||| | | ||||||| |||||||||| |||||| | |||| ||| |||||||| |
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| T |
8724105 |
tcaaattttcaaagaatgaatccaatcatcttcaaatttcagaacagcctatcagataagaaatatatcaaatcctg |
8724029 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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