View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9308_high_1 (Length: 439)
Name: NF9308_high_1
Description: NF9308
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9308_high_1 |
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Alignment Details
Target: chr1 (Bit Score: 362; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 362; E-Value: 0
Query Start/End: Original strand, 8 - 424
Target Start/End: Complemental strand, 3278609 - 3278196
Alignment:
| Q |
8 |
tggtgtttgtcgaaattttttaatatttttattggttgaattagaagttgtgcacaaagcgaaactaattgaaataggccataattgatatatatttttg |
107 |
Q |
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| T |
3278609 |
tggtgtttgtcgaaattttttaatatttttattggttgaattaggagttgtgcacaaagcgaaactcattgaaataggccataattgatatgtatttttg |
3278510 |
T |
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| Q |
108 |
tcttctttattcagtgtagggagtctaggaggacatggttcagaagaatttgtacaacattttagtgtcaagaattgcacattcaatggagctgatagtg |
207 |
Q |
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| T |
3278509 |
tcttctttattcagtgtagggagtctaggaggacatggttcagaagaatttgtacaacattttagtgtcaagaattgcacattcaatggagctgatagtg |
3278410 |
T |
|
| Q |
208 |
ccgttaaaatcaagacatggccggtaatgctataatatggtaatcaaataaatcatataataaaaccctatgtannnnnnnngtgttaattaattaacaa |
307 |
Q |
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| T |
3278409 |
ccgttaaaatcaagacatggccggtaatgctataatatggtaatcaaataaatcatataat--aaccctatgtatttttttt-tgttaattaattaacaa |
3278313 |
T |
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| Q |
308 |
aatcctatatatttttcaagggtggaaaaggatacgccaaacatatcatctttgaggatataatcataaatcaaacaaattatcctgtatttattgacca |
407 |
Q |
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| T |
3278312 |
aatcctatatatttttcaagggtggaaaaggatacgccaaacatatcatctttgaggatataatcataaatcaaacaaattatcctgtatttattgacca |
3278213 |
T |
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| Q |
408 |
acattatatgagaaccc |
424 |
Q |
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| T |
3278212 |
acattatatgagaaccc |
3278196 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 119 - 418
Target Start/End: Complemental strand, 3272767 - 3272462
Alignment:
| Q |
119 |
cagtgtagggagtctaggaggacatggttcagaagaatttgtacaacattttagtgtcaagaattgcacattcaatggagctgatagtgccgttaaaatc |
218 |
Q |
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| T |
3272767 |
cagtgtagggagtctaggagggcatggttcaccagaatttgtagaacatttaaggatcaagaattgcacattcaatggaggtgatagtgctgttaagatc |
3272668 |
T |
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| Q |
219 |
aagacatggccggtaatgctataatatggtaatcaaataaatcatataataaaac-----cctatgtannnnnnnngtgttaa--ttaattaac-aaaat |
310 |
Q |
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| T |
3272667 |
aaaacatggccggtaatgatacagttttgaaatcaataaaactatataataatacattatcctatgta---tttttgtgttaaattcaattaacgaatat |
3272571 |
T |
|
| Q |
311 |
cctata-tatttttcaagggtggaaaaggatacgccaaacatatcatctttgaggatataatcataaatcaaacaaattatcctgtatttattgaccaac |
409 |
Q |
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| T |
3272570 |
ccaatatttttttttaagggtggaaaaggatacgccaaagatatcatcttcgaggatataatactatatcaaacaaattaccctgtatatatcgaccaac |
3272471 |
T |
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| Q |
410 |
attatatga |
418 |
Q |
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| T |
3272470 |
attatatga |
3272462 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 174 - 239
Target Start/End: Complemental strand, 2448370 - 2448305
Alignment:
| Q |
174 |
gtcaagaattgcacattcaatggagctgatagtgccgttaaaatcaagacatggccggtaatgcta |
239 |
Q |
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| T |
2448370 |
gtcaggaattgcacattcaatggagctgatagtgcagcaagaatcaagacatggccagtaatgcta |
2448305 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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