View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9308_high_16 (Length: 241)

Name: NF9308_high_16
Description: NF9308
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9308_high_16
NF9308_high_16
[»] chr6 (8 HSPs)
chr6 (19-234)||(34383314-34383529)
chr6 (68-143)||(13627641-13627716)
chr6 (127-163)||(34103681-34103717)
chr6 (68-143)||(9231806-9231881)
chr6 (68-143)||(24694603-24694678)
chr6 (69-143)||(14309752-14309825)
chr6 (127-164)||(27863694-27863731)
chr6 (127-163)||(11279536-11279572)
[»] chr5 (11 HSPs)
chr5 (66-143)||(8456913-8456990)
chr5 (68-143)||(6257362-6257437)
chr5 (68-143)||(23218586-23218661)
chr5 (66-143)||(10081246-10081325)
chr5 (127-163)||(22903252-22903288)
chr5 (68-143)||(16618522-16618597)
chr5 (68-143)||(37168985-37169060)
chr5 (68-143)||(39862439-39862514)
chr5 (95-163)||(2676500-2676568)
chr5 (68-136)||(15631722-15631790)
chr5 (127-163)||(25560424-25560460)
[»] chr4 (12 HSPs)
chr4 (66-143)||(17888500-17888577)
chr4 (66-143)||(31377491-31377567)
chr4 (127-163)||(11054448-11054484)
chr4 (68-143)||(1535872-1535947)
chr4 (68-143)||(16338165-16338240)
chr4 (68-143)||(37801216-37801291)
chr4 (66-143)||(11054557-11054633)
chr4 (110-143)||(47084113-47084146)
chr4 (127-164)||(50328790-50328827)
chr4 (127-163)||(17888647-17888683)
chr4 (67-143)||(20818668-20818744)
chr4 (127-163)||(31377385-31377421)
[»] chr1 (11 HSPs)
chr1 (66-143)||(38859952-38860029)
chr1 (68-143)||(42517246-42517321)
chr1 (68-143)||(47022803-47022878)
chr1 (68-143)||(10155968-10156043)
chr1 (68-125)||(23908394-23908451)
chr1 (68-125)||(29149510-29149567)
chr1 (66-143)||(37189741-37189815)
chr1 (97-145)||(26511615-26511663)
chr1 (68-143)||(7742731-7742806)
chr1 (127-164)||(44107485-44107522)
chr1 (103-143)||(10907635-10907675)
[»] chr3 (8 HSPs)
chr3 (68-143)||(36539733-36539808)
chr3 (68-143)||(8950456-8950531)
chr3 (68-143)||(21853298-21853373)
chr3 (68-143)||(40845869-40845944)
chr3 (66-143)||(20382620-20382695)
chr3 (68-143)||(44994920-44994995)
chr3 (130-164)||(6280458-6280492)
chr3 (127-164)||(48206848-48206885)
[»] chr2 (10 HSPs)
chr2 (68-143)||(3597842-3597917)
chr2 (127-202)||(1387384-1387459)
chr2 (68-143)||(42769710-42769785)
chr2 (68-143)||(14186390-14186465)
chr2 (68-143)||(29846543-29846618)
chr2 (66-143)||(1386112-1386189)
chr2 (68-143)||(14941996-14942071)
chr2 (68-143)||(40277240-40277315)
chr2 (66-116)||(3956700-3956750)
chr2 (127-163)||(23685467-23685503)
[»] chr8 (6 HSPs)
chr8 (68-143)||(42072529-42072604)
chr8 (102-143)||(16591361-16591402)
chr8 (68-143)||(35806895-35806970)
chr8 (127-163)||(16591440-16591476)
chr8 (68-143)||(22324697-22324772)
chr8 (68-143)||(42013973-42014048)
[»] chr7 (9 HSPs)
chr7 (68-143)||(44164695-44164770)
chr7 (66-143)||(19334510-19334587)
chr7 (68-143)||(34707217-34707292)
chr7 (68-143)||(10576774-10576849)
chr7 (68-143)||(29238095-29238170)
chr7 (68-143)||(34259619-34259694)
chr7 (93-143)||(41853212-41853262)
chr7 (127-163)||(10334173-10334209)
chr7 (127-163)||(17303212-17303248)
[»] scaffold0079 (1 HSPs)
scaffold0079 (68-143)||(54620-54695)
[»] scaffold0016 (1 HSPs)
scaffold0016 (127-164)||(85505-85542)


Alignment Details
Target: chr6 (Bit Score: 152; Significance: 1e-80; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 19 - 234
Target Start/End: Original strand, 34383314 - 34383529
Alignment:
Q  19 ataggtgctcaatttctcgaacctctttactcaatttggctaagccgatgggcggttctatggcctggcgaccccaggcattcgcccgggttccggccta 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||| |||||||||    
T  34383314 ataggtgctcaatttctcgaacctctttactcaatttggctaagccgatgggcggttctatggcctggcgaccccgggtattcgcccgggctccggccta 34383413  T
Q  119 aatttttcgcaatttcttatgtaaacctttataaatgtgttgcaaannnnnnnnacccgaactttacaataatcctagctccgccaatacaaccaatagc 218  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||        |  ||||||||||||||||||||||||||||| | |||||||||||    
T  34383414 aatttttcgcaatttcttatgcaaacctttataaatgtgttgcaaaatttttttaatcgaactttacaataatcctagctccgccactgcaaccaatagc 34383513  T
Q  219 cattttctctgctcct 234  Q
    ||||||| || |||||    
T  34383514 cattttcactactcct 34383529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 68 - 143
Target Start/End: Complemental strand, 13627716 - 13627641
Alignment:
Q  68 gggcggttctatggcctggcgaccccaggcattcgcccgggttccggcctaaatttttcgcaatttcttatgtaaa 143  Q
    ||||||||||| |||| |||||||||| ||| ||| ||||| ||||| | |||||||| |||||||||| ||||||    
T  13627716 gggcggttctaaggcccggcgaccccaagcactcgtccgggctccgggccaaattttttgcaatttcttgtgtaaa 13627641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 127 - 163
Target Start/End: Complemental strand, 34103717 - 34103681
Alignment:
Q  127 gcaatttcttatgtaaacctttataaatgtgttgcaa 163  Q
    |||||||||||||||||||||| ||||||||||||||    
T  34103717 gcaatttcttatgtaaacctttgtaaatgtgttgcaa 34103681  T

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Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 68 - 143
Target Start/End: Original strand, 9231806 - 9231881
Alignment:
Q  68 gggcggttctatggcctggcgaccccaggcattcgcccgggttccggcctaaatttttcgcaatttcttatgtaaa 143  Q
    ||||||||||| |||  ||||||||| |||| ||||||||| ||||| | || ||||| |||||||||| ||||||    
T  9231806 gggcggttctaaggctcggcgaccccgggcactcgcccgggctccgggccaatttttttgcaatttcttgtgtaaa 9231881  T

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Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 68 - 143
Target Start/End: Original strand, 24694603 - 24694678
Alignment:
Q  68 gggcggttctatggcctggcgaccccaggcattcgcccgggttccggcctaaatttttcgcaatttcttatgtaaa 143  Q
    ||||||||||| |||| ||| ||||  |||| ||||||||| ||||| | |||||||| |||||||||| ||||||    
T  24694603 gggcggttctaaggcccggcaaccctgggcactcgcccgggctccgggccaaattttttgcaatttcttgtgtaaa 24694678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 69 - 143
Target Start/End: Original strand, 14309752 - 14309825
Alignment:
Q  69 ggcggttctatggcctggcgaccccaggcattcgcccgggttccggcctaaatttttcgcaatttcttatgtaaa 143  Q
    ||||||| || |||| ||||||||||| || |||||||| ||| |||| |||||||| |||||||||| ||||||    
T  14309752 ggcggttataaggcccggcgaccccagacactcgcccggtttcgggcc-aaattttttgcaatttcttgtgtaaa 14309825  T

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Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 127 - 164
Target Start/End: Complemental strand, 27863731 - 27863694
Alignment:
Q  127 gcaatttcttatgtaaacctttataaatgtgttgcaaa 164  Q
    |||||||||||||||||| | |||||||||||||||||    
T  27863731 gcaatttcttatgtaaacatctataaatgtgttgcaaa 27863694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 127 - 163
Target Start/End: Complemental strand, 11279572 - 11279536
Alignment:
Q  127 gcaatttcttatgtaaacctttataaatgtgttgcaa 163  Q
    ||||||||||||||||| || ||||||||||||||||    
T  11279572 gcaatttcttatgtaaatctctataaatgtgttgcaa 11279536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 50; Significance: 9e-20; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 66 - 143
Target Start/End: Original strand, 8456913 - 8456990
Alignment:
Q  66 atgggcggttctatggcctggcgaccccaggcattcgcccgggttccggcctaaatttttcgcaatttcttatgtaaa 143  Q
    |||||||||||||||||| |||||||||| ||| ||||||||| ||||||| ||||||||  ||||||||||||||||    
T  8456913 atgggcggttctatggcccggcgaccccatgcactcgcccgggctccggcccaaatttttttcaatttcttatgtaaa 8456990  T

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Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 68 - 143
Target Start/End: Original strand, 6257362 - 6257437
Alignment:
Q  68 gggcggttctatggcctggcgaccccaggcattcgcccgggttccggcctaaatttttcgcaatttcttatgtaaa 143  Q
    ||||||||||| |||| ||||||||| |||| ||||||||| ||||| | |||||||| |||||||||| ||||||    
T  6257362 gggcggttctaaggcccggcgaccccgggcactcgcccgggctccgggccaaattttttgcaatttcttgtgtaaa 6257437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 68 - 143
Target Start/End: Complemental strand, 23218661 - 23218586
Alignment:
Q  68 gggcggttctatggcctggcgaccccaggcattcgcccgggttccggcctaaatttttcgcaatttcttatgtaaa 143  Q
    ||||||||||| |||| ||||| ||| |||| ||||||||||||||| | ||| |||| |||||||||| ||||||    
T  23218661 gggcggttctaaggcccggcgatcccgggcactcgcccgggttccgggccaaagtttttgcaatttcttgtgtaaa 23218586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 66 - 143
Target Start/End: Complemental strand, 10081325 - 10081246
Alignment:
Q  66 atgggcggttctatggcctggcgaccccaggcattcgcccgggttccggcctaa--atttttcgcaatttcttatgtaaa 143  Q
    |||||||||||||||||| ||||| |||||||| ||||||||| || |||| ||   |||||  ||||||||||||||||    
T  10081325 atgggcggttctatggcccggcgatcccaggcactcgcccgggctctggcccaattttttttttcaatttcttatgtaaa 10081246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 127 - 163
Target Start/End: Complemental strand, 22903288 - 22903252
Alignment:
Q  127 gcaatttcttatgtaaacctttataaatgtgttgcaa 163  Q
    |||||||||||||||||||| ||||||||||||||||    
T  22903288 gcaatttcttatgtaaacctctataaatgtgttgcaa 22903252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 68 - 143
Target Start/End: Original strand, 16618522 - 16618597
Alignment:
Q  68 gggcggttctatggcctggcgaccccaggcattcgcccgggttccggcctaaatttttcgcaatttcttatgtaaa 143  Q
    ||||||||||| |||| ||||||||| |||| ||| ||||| ||||| | ||||||||  ||||||||| ||||||    
T  16618522 gggcggttctaaggcccggcgaccccgggcactcgtccgggctccgggccaaattttttacaatttcttgtgtaaa 16618597  T

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Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 68 - 143
Target Start/End: Original strand, 37168985 - 37169060
Alignment:
Q  68 gggcggttctatggcctggcgaccccaggcattcgcccgggttccggcctaaatttttcgcaatttcttatgtaaa 143  Q
    ||||||||||| |||| ||||||||| |||| | ||||||| ||||| | |||||||| ||||||| || ||||||    
T  37168985 gggcggttctaaggcccggcgaccccgggcacttgcccgggctccgggccaaattttttgcaattttttgtgtaaa 37169060  T

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Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 68 - 143
Target Start/End: Original strand, 39862439 - 39862514
Alignment:
Q  68 gggcggttctatggcctggcgaccccaggcattcgcccgggttccggcctaaatttttcgcaatttcttatgtaaa 143  Q
    ||||||||||| |||| ||||||||| |||| ||||||| | ||||| | || ||||| |||||||||| ||||||    
T  39862439 gggcggttctaaggcccggcgaccccgggcactcgcccgagctccgggccaatttttttgcaatttcttgtgtaaa 39862514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 95 - 163
Target Start/End: Original strand, 2676500 - 2676568
Alignment:
Q  95 ggcattcgcccgggttccggcctaaatttttcgcaatttcttatgtaaacctttataaatgtgttgcaa 163  Q
    |||| ||||||||| || || | || |||||  ||||||||||||||||||  ||||||||||||||||    
T  2676500 ggcactcgcccgggctctggtccaattttttttcaatttcttatgtaaacccctataaatgtgttgcaa 2676568  T

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Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 68 - 136
Target Start/End: Complemental strand, 15631790 - 15631722
Alignment:
Q  68 gggcggttctatggcctggcgaccccaggcattcgcccgggttccggcctaaatttttcgcaatttctt 136  Q
    ||||||||||| |||| ||||||||| |||| ||||||||| ||| | | ||||||||  |||||||||    
T  15631790 gggcggttctaaggcccggcgaccccgggcactcgcccgggctccaggccaaattttttacaatttctt 15631722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 127 - 163
Target Start/End: Original strand, 25560424 - 25560460
Alignment:
Q  127 gcaatttcttatgtaaacctttataaatgtgttgcaa 163  Q
    |||||||||||||||||||  ||||||||||||||||    
T  25560424 gcaatttcttatgtaaacccatataaatgtgttgcaa 25560460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 50; Significance: 9e-20; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 66 - 143
Target Start/End: Original strand, 17888500 - 17888577
Alignment:
Q  66 atgggcggttctatggcctggcgaccccaggcattcgcccgggttccggcctaaatttttcgcaatttcttatgtaaa 143  Q
    |||||||||||||||||| ||||||||| |||| ||||||||| ||||||| ||||||||  ||||||||||||||||    
T  17888500 atgggcggttctatggccaggcgaccccgggcactcgcccgggctccggcccaaatttttttcaatttcttatgtaaa 17888577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 66 - 143
Target Start/End: Complemental strand, 31377567 - 31377491
Alignment:
Q  66 atgggcggttctatggcctggcgaccccaggcattcgcccgggttccggcctaaatttttcgcaatttcttatgtaaa 143  Q
    |||||||||||||||||| ||||||||| |||| ||||||||| ||||||| ||||||||  ||||||||||||||||    
T  31377567 atgggcggttctatggcccggcgaccccgggcactcgcccgggctccggcccaaattttt-tcaatttcttatgtaaa 31377491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 127 - 163
Target Start/End: Complemental strand, 11054484 - 11054448
Alignment:
Q  127 gcaatttcttatgtaaacctttataaatgtgttgcaa 163  Q
    |||||||||||||||||||||||||||||||||||||    
T  11054484 gcaatttcttatgtaaacctttataaatgtgttgcaa 11054448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 68 - 143
Target Start/End: Complemental strand, 1535947 - 1535872
Alignment:
Q  68 gggcggttctatggcctggcgaccccaggcattcgcccgggttccggcctaaatttttcgcaatttcttatgtaaa 143  Q
    ||||||||||| |||| ||||||||  |||| ||||||||| ||||| | |||||||| |||||||||| ||||||    
T  1535947 gggcggttctaaggcccggcgacccggggcactcgcccgggctccgggccaaattttttgcaatttcttgtgtaaa 1535872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 68 - 143
Target Start/End: Original strand, 16338165 - 16338240
Alignment:
Q  68 gggcggttctatggcctggcgaccccaggcattcgcccgggttccggcctaaatttttcgcaatttcttatgtaaa 143  Q
    ||||||||||| |||| ||||||||| ||||||||||||| |||||| | || ||||| ||||||| || ||||||    
T  16338165 gggcggttctaaggcccggcgaccccgggcattcgcccggattccgggccaatttttttgcaattttttgtgtaaa 16338240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 68 - 143
Target Start/End: Original strand, 37801216 - 37801291
Alignment:
Q  68 gggcggttctatggcctggcgaccccaggcattcgcccgggttccggcctaaatttttcgcaatttcttatgtaaa 143  Q
    ||||||||||| |||| | ||| | |||||||||| ||||| ||||| |||||||||| |||||||||| ||||||    
T  37801216 gggcggttctaaggcccgacgatctcaggcattcgtccgggctccgggctaaattttttgcaatttcttgtgtaaa 37801291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 66 - 143
Target Start/End: Complemental strand, 11054633 - 11054557
Alignment:
Q  66 atgggcggttctatggcctggcgaccccaggcattcgcccgggttccggcctaaatttttcgcaatttcttatgtaaa 143  Q
    |||||||||||||||||| |||||||||  ||| || |||||| ||||| |  ||||||| |||||||||||||||||    
T  11054633 atgggcggttctatggcccggcgaccccgagcactcacccgggctccggtc-caattttttgcaatttcttatgtaaa 11054557  T

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Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 110 - 143
Target Start/End: Complemental strand, 47084146 - 47084113
Alignment:
Q  110 tccggcctaaatttttcgcaatttcttatgtaaa 143  Q
    |||||||||||||||| |||||||||||||||||    
T  47084146 tccggcctaaattttttgcaatttcttatgtaaa 47084113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 127 - 164
Target Start/End: Complemental strand, 50328827 - 50328790
Alignment:
Q  127 gcaatttcttatgtaaacctttataaatgtgttgcaaa 164  Q
    ||||||| ||||||||||| ||||||||||||||||||    
T  50328827 gcaattttttatgtaaacccttataaatgtgttgcaaa 50328790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 127 - 163
Target Start/End: Original strand, 17888647 - 17888683
Alignment:
Q  127 gcaatttcttatgtaaacctttataaatgtgttgcaa 163  Q
    |||||||||||||||||||  ||||||||||||||||    
T  17888647 gcaatttcttatgtaaacccctataaatgtgttgcaa 17888683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 67 - 143
Target Start/End: Complemental strand, 20818744 - 20818668
Alignment:
Q  67 tgggcggttctatggcctggcgaccccaggcattcgcccgggttccggcctaaatttttcgcaatttcttatgtaaa 143  Q
    ||||||||||||||  | |||||| || |||| ||||||||| || | || |||||||| |||||||||| ||||||    
T  20818744 tgggcggttctatgatccggcgactccgggcactcgcccgggctctgacccaaattttttgcaatttcttttgtaaa 20818668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 127 - 163
Target Start/End: Complemental strand, 31377421 - 31377385
Alignment:
Q  127 gcaatttcttatgtaaacctttataaatgtgttgcaa 163  Q
    |||||||||||||||||||  ||||||||||||||||    
T  31377421 gcaatttcttatgtaaaccgctataaatgtgttgcaa 31377385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 50; Significance: 9e-20; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 66 - 143
Target Start/End: Complemental strand, 38860029 - 38859952
Alignment:
Q  66 atgggcggttctatggcctggcgaccccaggcattcgcccgggttccggcctaaatttttcgcaatttcttatgtaaa 143  Q
    |||||||||||||||||| ||||||||| |||| ||||||||| ||||||| ||||||||  ||||||||||||||||    
T  38860029 atgggcggttctatggcccggcgaccccgggcactcgcccgggctccggcccaaatttttttcaatttcttatgtaaa 38859952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 68 - 143
Target Start/End: Original strand, 42517246 - 42517321
Alignment:
Q  68 gggcggttctatggcctggcgaccccaggcattcgcccgggttccggcctaaatttttcgcaatttcttatgtaaa 143  Q
    ||||||||||| |||| ||||||||| |||| ||||||||| ||||| | |||||||| |||||||||| ||||||    
T  42517246 gggcggttctaaggcccggcgaccccgggcactcgcccgggctccgggccaaattttttgcaatttcttgtgtaaa 42517321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 68 - 143
Target Start/End: Complemental strand, 47022878 - 47022803
Alignment:
Q  68 gggcggttctatggcctggcgaccccaggcattcgcccgggttccggcctaaatttttcgcaatttcttatgtaaa 143  Q
    ||||||||||| |||| ||||||||| |||| ||||||||| ||||| | |||||||| |||||||||| ||||||    
T  47022878 gggcggttctaaggcccggcgaccccgggcactcgcccgggctccgggccaaattttttgcaatttcttgtgtaaa 47022803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 68 - 143
Target Start/End: Original strand, 10155968 - 10156043
Alignment:
Q  68 gggcggttctatggcctggcgaccccaggcattcgcccgggttccggcctaaatttttcgcaatttcttatgtaaa 143  Q
    ||||||||||| |||| ||||||||| |||| ||||||||| ||||| | || ||||| |||||||||| ||||||    
T  10155968 gggcggttctaaggcccggcgaccccgggcactcgcccgggctccgggccaatttttttgcaatttcttgtgtaaa 10156043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 68 - 125
Target Start/End: Complemental strand, 23908451 - 23908394
Alignment:
Q  68 gggcggttctatggcctggcgaccccaggcattcgcccgggttccggcctaaattttt 125  Q
    ||||||||||| |||| |||||||||||||| ||||||||| ||||| | ||||||||    
T  23908451 gggcggttctaaggcccggcgaccccaggcactcgcccgggctccgggccaaattttt 23908394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 68 - 125
Target Start/End: Original strand, 29149510 - 29149567
Alignment:
Q  68 gggcggttctatggcctggcgaccccaggcattcgcccgggttccggcctaaattttt 125  Q
    |||||||| || ||||||||||||||||||| ||||||||| ||||| | ||||||||    
T  29149510 gggcggttttaaggcctggcgaccccaggcactcgcccgggctccggaccaaattttt 29149567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 66 - 143
Target Start/End: Complemental strand, 37189815 - 37189741
Alignment:
Q  66 atgggcggttctatggcctggcgaccccaggcattcgcccgggttccggcctaaatttttcgcaatttcttatgtaaa 143  Q
    ||||||||||||||||||  | || |||||||||||||||||  ||||||| |||||||| |||||||||||||||||    
T  37189815 atgggcggttctatggcc-agtga-cccaggcattcgcccggactccggcccaaattttt-gcaatttcttatgtaaa 37189741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 97 - 145
Target Start/End: Original strand, 26511615 - 26511663
Alignment:
Q  97 cattcgcccgggttccggcctaaatttttcgcaatttcttatgtaaacc 145  Q
    |||| ||||||| |||||||||| ||||| |||||||||||||||||||    
T  26511615 catttgcccgggctccggcctaatttttttgcaatttcttatgtaaacc 26511663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 68 - 143
Target Start/End: Original strand, 7742731 - 7742806
Alignment:
Q  68 gggcggttctatggcctggcgaccccaggcattcgcccgggttccggcctaaatttttcgcaatttcttatgtaaa 143  Q
    ||||||||||| |||| ||||||||| |||| ||||||||| ||||  | || ||||| |||||||||| ||||||    
T  7742731 gggcggttctaaggcccggcgaccccgggcactcgcccgggctccgagcaaatttttttgcaatttcttgtgtaaa 7742806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 127 - 164
Target Start/End: Original strand, 44107485 - 44107522
Alignment:
Q  127 gcaatttcttatgtaaacctttataaatgtgttgcaaa 164  Q
    ||||||||||||||||| | ||||||||||||||||||    
T  44107485 gcaatttcttatgtaaaaccttataaatgtgttgcaaa 44107522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 103 - 143
Target Start/End: Original strand, 10907635 - 10907675
Alignment:
Q  103 cccgggttccggcctaaatttttcgcaatttcttatgtaaa 143  Q
    |||||| ||||||| |||||||| |||||||||||||||||    
T  10907635 cccgggctccggcccaaattttttgcaatttcttatgtaaa 10907675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 44; Significance: 4e-16; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 68 - 143
Target Start/End: Complemental strand, 36539808 - 36539733
Alignment:
Q  68 gggcggttctatggcctggcgaccccaggcattcgcccgggttccggcctaaatttttcgcaatttcttatgtaaa 143  Q
    ||||||||||| |||||||||| | | |||| ||||||||| |||||||||||||||  |||||||||||||||||    
T  36539808 gggcggttctaaggcctggcgagctcgggcagtcgcccgggctccggcctaaattttatgcaatttcttatgtaaa 36539733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 68 - 143
Target Start/End: Original strand, 8950456 - 8950531
Alignment:
Q  68 gggcggttctatggcctggcgaccccaggcattcgcccgggttccggcctaaatttttcgcaatttcttatgtaaa 143  Q
    ||||||||||| |||||||||||||| |||| ||||||||| || || | |||||||| |||||||||| ||||||    
T  8950456 gggcggttctaaggcctggcgaccccgggcactcgcccgggctctgggccaaattttttgcaatttcttgtgtaaa 8950531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 68 - 143
Target Start/End: Complemental strand, 21853373 - 21853298
Alignment:
Q  68 gggcggttctatggcctggcgaccccaggcattcgcccgggttccggcctaaatttttcgcaatttcttatgtaaa 143  Q
    ||||||||||| |||| ||||||||| |||| ||| ||||| ||||| | |||||||| |||||||||| ||||||    
T  21853373 gggcggttctaaggcccggcgaccccgggcactcggccgggctccgggccaaattttttgcaatttcttgtgtaaa 21853298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 68 - 143
Target Start/End: Original strand, 40845869 - 40845944
Alignment:
Q  68 gggcggttctatggcctggcgaccccaggcattcgcccgggttccggcctaaatttttcgcaatttcttatgtaaa 143  Q
    ||||||||||| |||| ||||||| | ||||||||||||||||||||   |||||||| ||||||| || ||||||    
T  40845869 gggcggttctaaggcccggcgacctcgggcattcgcccgggttccgggtcaaattttttgcaattttttgtgtaaa 40845944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 66 - 143
Target Start/End: Complemental strand, 20382695 - 20382620
Alignment:
Q  66 atgggcggttctatggcctggcgaccccaggcattcgcccgggttccggcctaaatttttcgcaatttcttatgtaaa 143  Q
    |||||||||||||||||| ||||||||| |||| | ||||||| ||||||| ||||||||   |||||||||||||||    
T  20382695 atgggcggttctatggcc-ggcgaccccgggcacttgcccgggctccggcccaaattttt-ttaatttcttatgtaaa 20382620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 68 - 143
Target Start/End: Original strand, 44994920 - 44994995
Alignment:
Q  68 gggcggttctatggcctggcgaccccaggcattcgcccgggttccggcctaaatttttcgcaatttcttatgtaaa 143  Q
    ||||||||||| |||| ||||||||| || | |||| |||| ||||| | |||||||| |||||||||| ||||||    
T  44994920 gggcggttctaaggcccggcgaccccgggtactcgctcgggctccgggccaaattttttgcaatttcttgtgtaaa 44994995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 130 - 164
Target Start/End: Original strand, 6280458 - 6280492
Alignment:
Q  130 atttcttatgtaaacctttataaatgtgttgcaaa 164  Q
    |||| ||||||||||||||||||||||||||||||    
T  6280458 attttttatgtaaacctttataaatgtgttgcaaa 6280492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 127 - 164
Target Start/End: Complemental strand, 48206885 - 48206848
Alignment:
Q  127 gcaatttcttatgtaaacctttataaatgtgttgcaaa 164  Q
    ||||||||||||||||||  ||||||||||||||||||    
T  48206885 gcaatttcttatgtaaacacttataaatgtgttgcaaa 48206848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 44; Significance: 4e-16; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 68 - 143
Target Start/End: Original strand, 3597842 - 3597917
Alignment:
Q  68 gggcggttctatggcctggcgaccccaggcattcgcccgggttccggcctaaatttttcgcaatttcttatgtaaa 143  Q
    ||||||||||| |||| |||||||||||||| ||||||||| ||||| | |||||||| |||||||||| ||||||    
T  3597842 gggcggttctaaggcccggcgaccccaggcactcgcccgggctccgggccaaattttttgcaatttcttgtgtaaa 3597917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 127 - 202
Target Start/End: Original strand, 1387384 - 1387459
Alignment:
Q  127 gcaatttcttatgtaaacctttataaatgtgttgcaaannnnnnnnacccgaactttacaataatcctagctccgc 202  Q
    ||||||||||||||||||| ||| ||||||||||||||        |||||||||||||||||||||| |||||||    
T  1387384 gcaatttcttatgtaaacccttacaaatgtgttgcaaattttttttacccgaactttacaataatcctggctccgc 1387459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 68 - 143
Target Start/End: Original strand, 42769710 - 42769785
Alignment:
Q  68 gggcggttctatggcctggcgaccccaggcattcgcccgggttccggcctaaatttttcgcaatttcttatgtaaa 143  Q
    ||||||||||| |||| ||||||||| |||| ||||||||| ||||| | |||||||| |||||||||| ||||||    
T  42769710 gggcggttctaaggcccggcgaccccgggcactcgcccgggctccgggccaaattttttgcaatttcttgtgtaaa 42769785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 68 - 143
Target Start/End: Original strand, 14186390 - 14186465
Alignment:
Q  68 gggcggttctatggcctggcgaccccaggcattcgcccgggttccggcctaaatttttcgcaatttcttatgtaaa 143  Q
    ||||||||||| |||| |||||||||||||| ||||||| | ||||| | |||||||| | |||||||| ||||||    
T  14186390 gggcggttctaaggcccggcgaccccaggcactcgcccgagctccgggccaaattttttgtaatttcttgtgtaaa 14186465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 68 - 143
Target Start/End: Complemental strand, 29846618 - 29846543
Alignment:
Q  68 gggcggttctatggcctggcgaccccaggcattcgcccgggttccggcctaaatttttcgcaatttcttatgtaaa 143  Q
    ||||||||||| |||| | ||||||| |||| ||||||||| ||||| | |||||||| |||||||||| ||||||    
T  29846618 gggcggttctaaggcccgacgaccccgggcactcgcccgggctccgggccaaattttttgcaatttcttgtgtaaa 29846543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 66 - 143
Target Start/End: Original strand, 1386112 - 1386189
Alignment:
Q  66 atgggcggttctatggcctggcgaccccaggcattcgcccgggttccggcctaaatttttcgcaatttcttatgtaaa 143  Q
    |||||||||||||||||  | ||||||| |||| ||||||||| || | || || ||||| |||||||||||||||||    
T  1386112 atgggcggttctatggctcgacgaccccgggcactcgcccgggctcggacccaatttttttgcaatttcttatgtaaa 1386189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 68 - 143
Target Start/End: Original strand, 14941996 - 14942071
Alignment:
Q  68 gggcggttctatggcctggcgaccccaggcattcgcccgggttccggcctaaatttttcgcaatttcttatgtaaa 143  Q
    ||||||||||| |||  ||||||||| | || ||||||||| ||||| | |||||||| |||||||||| ||||||    
T  14941996 gggcggttctaaggctcggcgaccccggacactcgcccgggctccgggccaaattttttgcaatttcttgtgtaaa 14942071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 68 - 143
Target Start/End: Original strand, 40277240 - 40277315
Alignment:
Q  68 gggcggttctatggcctggcgaccccaggcattcgcccgggttccggcctaaatttttcgcaatttcttatgtaaa 143  Q
    ||||||||||| |||| ||||||||| |||| | | ||||| ||||| | |||||||| ||||||| |||||||||    
T  40277240 gggcggttctaaggcccggcgaccccgggcacttgtccgggctccgggccaaattttttgcaattttttatgtaaa 40277315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 66 - 116
Target Start/End: Complemental strand, 3956750 - 3956700
Alignment:
Q  66 atgggcggttctatggcctggcgaccccaggcattcgcccgggttccggcc 116  Q
    |||||||||||||||||| || |||||| |||| ||||||||| |||||||    
T  3956750 atgggcggttctatggcccggtgaccccgggcactcgcccgggctccggcc 3956700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 127 - 163
Target Start/End: Original strand, 23685467 - 23685503
Alignment:
Q  127 gcaatttcttatgtaaacctttataaatgtgttgcaa 163  Q
    ||||||||||||||||||| |||||||| ||||||||    
T  23685467 gcaatttcttatgtaaacccttataaatatgttgcaa 23685503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 68 - 143
Target Start/End: Complemental strand, 42072604 - 42072529
Alignment:
Q  68 gggcggttctatggcctggcgaccccaggcattcgcccgggttccggcctaaatttttcgcaatttcttatgtaaa 143  Q
    |||||||||||||||| ||||||||| |||| ||||||||| ||||| | || ||||| |||||||||| ||||||    
T  42072604 gggcggttctatggcccggcgaccccgggcactcgcccgggctccgggccaatttttttgcaatttcttgtgtaaa 42072529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 102 - 143
Target Start/End: Original strand, 16591361 - 16591402
Alignment:
Q  102 gcccgggttccggcctaaatttttcgcaatttcttatgtaaa 143  Q
    |||||||||||||||||||||||| |||||||||||||||||    
T  16591361 gcccgggttccggcctaaattttttgcaatttcttatgtaaa 16591402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 68 - 143
Target Start/End: Complemental strand, 35806970 - 35806895
Alignment:
Q  68 gggcggttctatggcctggcgaccccaggcattcgcccgggttccggcctaaatttttcgcaatttcttatgtaaa 143  Q
    ||||||||||| |||| ||||||||| |||| ||| ||||| ||||| | |||||||| |||||||||| ||||||    
T  35806970 gggcggttctaaggcccggcgaccccgggcactcggccgggctccgggccaaattttttgcaatttcttgtgtaaa 35806895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 127 - 163
Target Start/End: Original strand, 16591440 - 16591476
Alignment:
Q  127 gcaatttcttatgtaaacctttataaatgtgttgcaa 163  Q
    ||||||||||||||||||| |||||||||||||||||    
T  16591440 gcaatttcttatgtaaacccttataaatgtgttgcaa 16591476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 68 - 143
Target Start/End: Complemental strand, 22324772 - 22324697
Alignment:
Q  68 gggcggttctatggcctggcgaccccaggcattcgcccgggttccggcctaaatttttcgcaatttcttatgtaaa 143  Q
    ||||||||||| |||| ||| ||||| |||| ||||||||| ||||| | |||||||| | |||||||| ||||||    
T  22324772 gggcggttctaaggcccggcaaccccgggcactcgcccgggctccgggccaaattttttgtaatttcttgtgtaaa 22324697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 68 - 143
Target Start/End: Complemental strand, 42014048 - 42013973
Alignment:
Q  68 gggcggttctatggcctggcgaccccaggcattcgcccgggttccggcctaaatttttcgcaatttcttatgtaaa 143  Q
    ||||||||||| |||| ||||||||| |||| | | ||||||| ||| | |||||||| |||||||||| ||||||    
T  42014048 gggcggttctaaggcccggcgaccccgggcacttgtccgggtttcgggccaaattttttgcaatttcttgtgtaaa 42013973  T

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Target: chr7 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 68 - 143
Target Start/End: Original strand, 44164695 - 44164770
Alignment:
Q  68 gggcggttctatggcctggcgaccccaggcattcgcccgggttccggcctaaatttttcgcaatttcttatgtaaa 143  Q
    ||||||||||| |||| ||||||||| |||| ||||||||| ||||| | |||||||| |||||||||| ||||||    
T  44164695 gggcggttctaaggcccggcgaccccgggcactcgcccgggctccgggccaaattttttgcaatttcttgtgtaaa 44164770  T

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Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 66 - 143
Target Start/End: Original strand, 19334510 - 19334587
Alignment:
Q  66 atgggcggttctatggcctggcgaccccaggcattcgcccgggttccggcctaaatttttcgcaatttcttatgtaaa 143  Q
    |||||||||||||||||| ||||||||| | || || ||| |||| ||||| || ||||| |||||||||||||||||    
T  19334510 atgggcggttctatggcccggcgaccccggtcactcccccaggtttcggcccaatttttttgcaatttcttatgtaaa 19334587  T

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Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 68 - 143
Target Start/End: Complemental strand, 34707292 - 34707217
Alignment:
Q  68 gggcggttctatggcctggcgaccccaggcattcgcccgggttccggcctaaatttttcgcaatttcttatgtaaa 143  Q
    ||||||||||| | || ||||||||| |||| ||||||||| ||||| | |||||||| |||||||||| ||||||    
T  34707292 gggcggttctaagacccggcgaccccgggcactcgcccgggctccgggccaaattttttgcaatttcttgtgtaaa 34707217  T

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Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 68 - 143
Target Start/End: Complemental strand, 10576849 - 10576774
Alignment:
Q  68 gggcggttctatggcctggcgaccccaggcattcgcccgggttccggcctaaatttttcgcaatttcttatgtaaa 143  Q
    ||||||||||| || | ||||||||| |||| || |||||| ||||| | |||||||| |||||||||| ||||||    
T  10576849 gggcggttctaaggtccggcgaccccgggcactcacccgggctccgggccaaattttttgcaatttcttgtgtaaa 10576774  T

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Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 68 - 143
Target Start/End: Original strand, 29238095 - 29238170
Alignment:
Q  68 gggcggttctatggcctggcgaccccaggcattcgcccgggttccggcctaaatttttcgcaatttcttatgtaaa 143  Q
    ||||||||||| |||| ||| ||||| |||| ||||||||| ||||| | || ||||| |||||||||| ||||||    
T  29238095 gggcggttctaaggcccggcaaccccgggcactcgcccgggctccgggccaatttttttgcaatttcttgtgtaaa 29238170  T

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Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 68 - 143
Target Start/End: Complemental strand, 34259694 - 34259619
Alignment:
Q  68 gggcggttctatggcctggcgaccccaggcattcgcccgggttccggcctaaatttttcgcaatttcttatgtaaa 143  Q
    ||||||||||| |||| |||||| || |||| ||||||||| ||||| | || ||||| |||||||||| ||||||    
T  34259694 gggcggttctaaggcccggcgactccgggcactcgcccgggctccgggccaatttttttgcaatttcttgtgtaaa 34259619  T

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Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 93 - 143
Target Start/End: Complemental strand, 41853262 - 41853212
Alignment:
Q  93 caggcattcgcccgggttccggcctaaatttttcgcaatttcttatgtaaa 143  Q
    |||||| ||||||||| ||||||| |||||||| |||||||||||| ||||    
T  41853262 caggcactcgcccgggctccggcccaaattttttgcaatttcttatttaaa 41853212  T

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Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 127 - 163
Target Start/End: Complemental strand, 10334209 - 10334173
Alignment:
Q  127 gcaatttcttatgtaaacctttataaatgtgttgcaa 163  Q
    |||||||||||||||||||  ||||||||||||||||    
T  10334209 gcaatttcttatgtaaacccctataaatgtgttgcaa 10334173  T

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Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 127 - 163
Target Start/End: Original strand, 17303212 - 17303248
Alignment:
Q  127 gcaatttcttatgtaaacctttataaatgtgttgcaa 163  Q
    |||||||||||||||||||  ||||||||||||||||    
T  17303212 gcaatttcttatgtaaaccactataaatgtgttgcaa 17303248  T

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Target: scaffold0079 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0079
Description:

Target: scaffold0079; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 68 - 143
Target Start/End: Complemental strand, 54695 - 54620
Alignment:
Q  68 gggcggttctatggcctggcgaccccaggcattcgcccgggttccggcctaaatttttcgcaatttcttatgtaaa 143  Q
    ||||||||||| |||| ||||||||| ||||||||||||| |||||| | || ||||| ||||||| || ||||||    
T  54695 gggcggttctaaggcccggcgaccccgggcattcgcccggattccgggccaatttttttgcaattttttgtgtaaa 54620  T

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Target: scaffold0016 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0016
Description:

Target: scaffold0016; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 127 - 164
Target Start/End: Complemental strand, 85542 - 85505
Alignment:
Q  127 gcaatttcttatgtaaacctttataaatgtgttgcaaa 164  Q
    |||||||||||||||||||| ||||||| |||||||||    
T  85542 gcaatttcttatgtaaacctctataaatatgttgcaaa 85505  T

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