View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9308_high_3 (Length: 374)
Name: NF9308_high_3
Description: NF9308
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9308_high_3 |
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Alignment Details
Target: chr4 (Bit Score: 119; Significance: 1e-60; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 25 - 270
Target Start/End: Complemental strand, 35521304 - 35521051
Alignment:
| Q |
25 |
atacttacaaattaactcgtgatagaatggaacaaagttggacaaggccaaaaaatgttagcaggcttatcctctaaattctccaagttgaaacaataag |
124 |
Q |
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||||||||||||||| | || | || |||||||||||||||||||||||||||||||| |||| |||| ||||||||||| ||||||||||||| ||| |
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| T |
35521304 |
atacttacaaattaattggtcacaggatggaacaaagttggacaaggccaaaaaatgtcagcaaccttagtctctaaattcttcaagttgaaacaagaag |
35521205 |
T |
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| Q |
125 |
tcttgtcttcacaatagaagtagatgcaaatttccttcacatccgtaataatctcgagccaacaatgcaaagtttgagtctttaccca---------aaa |
215 |
Q |
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| T |
35521204 |
ccttgtgatcaaaatagaaatagatgc-aatttccttcaaatccataataatcttgagctaacaatgcaaagtttgagtctttactcaaaacaaatgaaa |
35521106 |
T |
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| Q |
216 |
catcacccaaatcttttacatctaaccatttaccccattcttgatcaagcttata |
270 |
Q |
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||||||||||||||||||| | ||||||||||||||||||||||||||||||||| |
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| T |
35521105 |
catcacccaaatcttttacttttaaccatttaccccattcttgatcaagcttata |
35521051 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 114; Significance: 1e-57; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 26 - 147
Target Start/End: Original strand, 38823596 - 38823717
Alignment:
| Q |
26 |
tacttacaaattaactcgtgatagaatggaacaaagttggacaaggccaaaaaatgttagcaggcttatcctctaaattctccaagttgaaacaataagt |
125 |
Q |
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| T |
38823596 |
tacttacaaattaactcgtgatagaatggaacaaagttggacaaggccaaaaaatgttagcaggcttagcctctaaattctccaagttgaaacaataagt |
38823695 |
T |
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| Q |
126 |
cttgtcttcacaatagaagtag |
147 |
Q |
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| T |
38823696 |
cctgtcttcacaatagaagtag |
38823717 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 153 - 273
Target Start/End: Original strand, 38825087 - 38825218
Alignment:
| Q |
153 |
aatttccttcacatccgtaataatctcgagccaacaatgcaaagtttgagtctttacccaaaac-----------atcacccaaatcttttacatctaac |
241 |
Q |
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| T |
38825087 |
aatttccttcacatccgtaataatctcgagccaacaatgcaaagtttgagtctttacccaaaacaaacgaaacatatcacccaaatcttttacatataac |
38825186 |
T |
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| Q |
242 |
catttaccccattcttgatcaagcttatatac |
273 |
Q |
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| T |
38825187 |
catttaccccattcttgatcaagcttatatac |
38825218 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 51 - 270
Target Start/End: Original strand, 38813087 - 38813314
Alignment:
| Q |
51 |
atggaacaaagttggacaaggccaaaaaatgttagcaggcttatcctctaaattctccaagttgaaacaataagtcttgtcttcacaatagaagtagatg |
150 |
Q |
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| T |
38813087 |
atggaacaaagttggaccaatccaaaatttgtcagcaggtttagactctaaactcttcaagttgaaacaagatgccctgctttcataatagaagtagatg |
38813186 |
T |
|
| Q |
151 |
caaatttccttcacatccgtaataatctcgagccaacaatgcaaagtttgagtctttaccca---------aaacatcacccaaatcttttacatctaac |
241 |
Q |
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|| |||| |||||| || || ||||||||||||||||||||||| |||| ||||||| ||| |||||||||||||||||||||| | |||| |
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| T |
38813187 |
cagttttc-ttcacacccatagtaatctcgagccaacaatgcaaaatttgtgtctttatccaaaacaaacgaaacatcacccaaatcttttacttttaac |
38813285 |
T |
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| Q |
242 |
catttaccccattcttgatcaagcttata |
270 |
Q |
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| T |
38813286 |
catttaccccattcttgatcaagcttata |
38813314 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 308 - 350
Target Start/End: Original strand, 38825964 - 38826003
Alignment:
| Q |
308 |
tacaagtactgcggaatcgaacaacatcaagtgtagttttcag |
350 |
Q |
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| T |
38825964 |
tacaagtactgcggaatcgaacaa---caagtgtagttttcag |
38826003 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 58; Significance: 3e-24; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 54 - 270
Target Start/End: Original strand, 35548381 - 35548605
Alignment:
| Q |
54 |
gaacaaagttggacaaggccaaaaaatgttagcaggcttatcctctaaattctccaagttgaaacaataagtcttgtcttcacaatagaagtagatgcaa |
153 |
Q |
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|||||||||||| ||||||||||| |||| ||||||||| | | |||||||||| ||||||||||| | |||| ||| | || ||| ||| |||||| |
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| T |
35548381 |
gaacaaagttgggcaaggccaaaagctgttggcaggcttacaccttgaattctccaaattgaaacaataggccttgcctttagaaaagaggtaaatgcaa |
35548480 |
T |
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| Q |
154 |
atttccttcacatccgtaataatctcgagccaacaatgcaaagtttgagtctttacccaaaaca---------tcacccaaatcttttacatctaaccat |
244 |
Q |
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|||| || |||||| ||||| ||| |||| | ||||| ||||||||||||| ||||||||||| ||||||| |||| ||||| |||||| |
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| T |
35548481 |
-tttctttgacatccataatagtcttgagctatcaatgaaaagtttgagtctctacccaaaacaaacaaagcttcacccagatctggcacatcaaaccat |
35548579 |
T |
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| Q |
245 |
ttaccccattcttgatcaagcttata |
270 |
Q |
| |
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|||||||||||||||||||||||||| |
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| T |
35548580 |
ttaccccattcttgatcaagcttata |
35548605 |
T |
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