View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9308_low_10 (Length: 442)

Name: NF9308_low_10
Description: NF9308
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9308_low_10
NF9308_low_10
[»] scaffold0656 (1 HSPs)
scaffold0656 (11-431)||(6944-7364)
[»] chr2 (7 HSPs)
chr2 (14-431)||(24915589-24916006)
chr2 (11-431)||(23198723-23199143)
chr2 (12-431)||(22640210-22640629)
chr2 (11-431)||(23624128-23624548)
chr2 (20-431)||(23811869-23812282)
chr2 (126-431)||(25114015-25114320)
chr2 (14-94)||(25114352-25114432)
[»] scaffold0107 (1 HSPs)
scaffold0107 (11-431)||(6038-6458)
[»] scaffold0026 (1 HSPs)
scaffold0026 (6-432)||(136923-137349)
[»] chr1 (4 HSPs)
chr1 (13-431)||(22802661-22803079)
chr1 (11-431)||(21295853-21296273)
chr1 (11-431)||(41378268-41378688)
chr1 (11-431)||(22692103-22692512)
[»] chr6 (8 HSPs)
chr6 (11-431)||(16212142-16212562)
chr6 (14-415)||(19033065-19033466)
chr6 (314-431)||(17806569-17806686)
chr6 (148-255)||(13779244-13779351)
chr6 (134-228)||(20191036-20191130)
chr6 (134-228)||(22144861-22144955)
chr6 (20-93)||(16164100-16164173)
chr6 (14-90)||(17806909-17806985)
[»] chr8 (3 HSPs)
chr8 (11-431)||(22341452-22341872)
chr8 (11-431)||(22346635-22347055)
chr8 (11-431)||(22069654-22070075)
[»] chr5 (4 HSPs)
chr5 (11-417)||(21512894-21513300)
chr5 (126-359)||(22850169-22850402)
chr5 (127-255)||(26864544-26864672)
chr5 (366-417)||(26864419-26864470)
[»] scaffold0241 (1 HSPs)
scaffold0241 (11-431)||(13358-13778)
[»] scaffold0304 (1 HSPs)
scaffold0304 (11-431)||(20905-21325)
[»] chr4 (5 HSPs)
chr4 (11-431)||(15151776-15152196)
chr4 (117-431)||(14744847-14745161)
chr4 (11-431)||(13287246-13287657)
chr4 (14-431)||(18560432-18560848)
chr4 (11-121)||(14748104-14748214)
[»] chr3 (7 HSPs)
chr3 (11-431)||(10154887-10155307)
chr3 (11-417)||(13304796-13305202)
chr3 (11-431)||(10784061-10784481)
chr3 (11-431)||(14691312-14691732)
chr3 (11-431)||(7363315-7363734)
chr3 (14-228)||(268472-268686)
chr3 (148-213)||(14140603-14140668)
[»] scaffold0001 (2 HSPs)
scaffold0001 (11-431)||(92964-93373)
scaffold0001 (11-431)||(124653-125064)
[»] scaffold0053 (1 HSPs)
scaffold0053 (14-431)||(40137-40554)
[»] scaffold0040 (1 HSPs)
scaffold0040 (11-431)||(32870-33290)
[»] scaffold0022 (1 HSPs)
scaffold0022 (11-431)||(12919-13339)
[»] chr7 (7 HSPs)
chr7 (11-417)||(18169516-18169922)
chr7 (11-431)||(14340526-14340946)
chr7 (311-426)||(18457991-18458106)
chr7 (20-180)||(13276022-13276182)
chr7 (28-86)||(16033523-16033581)
chr7 (151-205)||(18457830-18457884)
chr7 (20-93)||(9015878-9015951)
[»] scaffold0064 (1 HSPs)
scaffold0064 (11-431)||(35526-35947)
[»] scaffold0051 (1 HSPs)
scaffold0051 (11-431)||(71330-71750)
[»] scaffold0046 (2 HSPs)
scaffold0046 (72-399)||(55920-56247)
scaffold0046 (11-76)||(35396-35461)
[»] scaffold0100 (1 HSPs)
scaffold0100 (14-431)||(887-1304)
[»] scaffold0023 (4 HSPs)
scaffold0023 (198-332)||(66295-66429)
scaffold0023 (198-332)||(75473-75607)
scaffold0023 (369-431)||(66422-66484)
scaffold0023 (369-431)||(75600-75662)
[»] scaffold0013 (4 HSPs)
scaffold0013 (199-431)||(150940-151172)
scaffold0013 (14-243)||(85081-85310)
scaffold0013 (14-179)||(77274-77439)
scaffold0013 (18-129)||(150817-150928)
[»] scaffold0401 (1 HSPs)
scaffold0401 (151-417)||(5810-6076)
[»] scaffold0757 (1 HSPs)
scaffold0757 (134-431)||(2879-3175)
[»] scaffold0016 (1 HSPs)
scaffold0016 (14-144)||(177471-177601)
[»] scaffold0037 (1 HSPs)
scaffold0037 (234-417)||(66981-67163)
[»] scaffold0093 (1 HSPs)
scaffold0093 (366-417)||(54416-54467)


Alignment Details
Target: scaffold0656 (Bit Score: 385; Significance: 0; HSPs: 1)
Name: scaffold0656
Description:

Target: scaffold0656; HSP #1
Raw Score: 385; E-Value: 0
Query Start/End: Original strand, 11 - 431
Target Start/End: Original strand, 6944 - 7364
Alignment:
Q  11 cagagagcgatgaatttaatgtttcatgatttcatagagaattttatgcaaatttacattgatgatattgtggtaaaatcttcttcggaggaaagacatt 110  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||    
T  6944 cagagagcgatgaatttaatgtttcatgatttcatagaggattttatgcaaatttacattgatgatattgtggtaaaatcttcttcagaagaaagacatt 7043  T
Q  111 tgaaacatttacgccgatcgtttgaaaggatgaggcgatatggattgaaaatgaatccattaaaatgtgcatttggggtttgtgcatgtgattttctagg 210  Q
    || |||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||    
T  7044 tggaacatttacgtcgatcttttgaaaggatgaggcgatatggattgaaaatgaatccattaaaatgtgcattcggggtttgtgcaggtgattttctagg 7143  T
Q  211 tttcgtggtgcataaaaagggaatcgaaatcaaccagaacaaaaccaaggcaataatcgagaccaaagctccttctacgaagaaagagttgcagtcacta 310  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7144 tttcgtggtgcataaaaagggaatcgaaatcaaccagaacaaaaccaaggcaataatcgagaccaaagctccttctacgaagaaagagttgcagtcacta 7243  T
Q  311 ttaggaaaaatcaactttctcaggaggtttatatcaaatctaagtggcaagacacaagctttctcgccattactccgactaaagaaagaggatgttttca 410  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  7244 ttaggaaaaatcaactttctcaggaggtttatatcaaatctaagtggcaagacacaagctttctcgccattactccaactaaagaaagaggatgttttca 7343  T
Q  411 aatgggagccggaacaccaaa 431  Q
    |||||||||||||||||||||    
T  7344 aatgggagccggaacaccaaa 7364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 374; Significance: 0; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 374; E-Value: 0
Query Start/End: Original strand, 14 - 431
Target Start/End: Original strand, 24915589 - 24916006
Alignment:
Q  14 agagcgatgaatttaatgtttcatgatttcatagagaattttatgcaaatttacattgatgatattgtggtaaaatcttcttcggaggaaagacatttga 113  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  24915589 agagcgatgaatttaatgtttcatgatttcatagaggattttatgcaaatttacattgatgatattgtggtaaaatcttcttcggaggaaagacatttgg 24915688  T
Q  114 aacatttacgccgatcgtttgaaaggatgaggcgatatggattgaaaatgaatccattaaaatgtgcatttggggtttgtgcatgtgattttctaggttt 213  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  24915689 aacatttacgccgatcatttgaaaggatgaggcgatatggattgaaaatgaatccattaaaatgtgcatttggggtttgtgcaggtgattttctaggttt 24915788  T
Q  214 cgtggtgcataaaaagggaatcgaaatcaaccagaacaaaaccaaggcaataatcgagaccaaagctccttctacgaagaaagagttgcagtcactatta 313  Q
    ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24915789 cgtagtgcataaaaagggaatcgaaatcaaccagaacaaaaccaaggcaataatcgagaccaaagctccttctacgaagaaagagttgcagtcactatta 24915888  T
Q  314 ggaaaaatcaactttctcaggaggtttatatcaaatctaagtggcaagacacaagctttctcgccattactccgactaaagaaagaggatgttttcaaat 413  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||| |||||||||||||| |||||||||||||    
T  24915889 ggaaaaatcaactttctcaggaggtttatatcaaatctaagtgtcaagacacaaactttctcgccattacttcgactaaagaaagatgatgttttcaaat 24915988  T
Q  414 gggagccggaacaccaaa 431  Q
    ||||| || |||||||||    
T  24915989 gggagtcgaaacaccaaa 24916006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 11 - 431
Target Start/End: Complemental strand, 23199143 - 23198723
Alignment:
Q  11 cagagagcgatgaatttaatgtttcatgatttcatagagaattttatgcaaatttacattgatgatattgtggtaaaatcttcttcggaggaaagacatt 110  Q
    ||||||||||||||||||||||| ||||| ||||||||||||||||||||  ||||||| ||||| ||||| || |||||||||||||| || ||||| |    
T  23199143 cagagagcgatgaatttaatgttccatgacttcatagagaattttatgcaggtttacatagatgacattgtagtgaaatcttcttcggaagagagacact 23199044  T
Q  111 tgaaacatttacgccgatcgtttgaaaggatgaggcgatatggattgaaaatgaatccattaaaatgtgcatttggggtttgtgcatgtgattttctagg 210  Q
    || |||||||||||||||| || ||||||||||||| ||||||||||||||||||||| ||||| ||||||||||||||||||||| |||||||  ||||    
T  23199043 tggaacatttacgccgatcattcgaaaggatgaggcaatatggattgaaaatgaatcctttaaagtgtgcatttggggtttgtgcaggtgatttcttagg 23198944  T
Q  211 tttcgtggtgcataaaaagggaatcgaaatcaaccagaacaaaaccaaggcaataatcgagaccaaagctccttctacgaagaaagagttgcagtcacta 310  Q
     ||||| |||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||| ||||||||||| ||||||||||| ||||| |||    
T  23198943 gttcgtcgtgcataaaaagggaatcgagatcaaccagaacaaaaccaaggcaataattgagaccaaggctccttctacaaagaaagagttacagtctcta 23198844  T
Q  311 ttaggaaaaatcaactttctcaggaggtttatatcaaatctaagtggcaagacacaagctttctcgccattactccgactaaagaaagaggatgttttca 410  Q
     ||||||| |||||||||||| | |||||||||||||| |||||| ||||||||||||||||||| ||| ||||||||||||||||||| ||||||||||    
T  23198843 ctaggaaagatcaactttctccgaaggtttatatcaaacctaagtagcaagacacaagctttctcaccactactccgactaaagaaagatgatgttttca 23198744  T
Q  411 aatgggagccggaacaccaaa 431  Q
    ||||||| || || |||||||    
T  23198743 aatgggaaccagagcaccaaa 23198723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 12 - 431
Target Start/End: Original strand, 22640210 - 22640629
Alignment:
Q  12 agagagcgatgaatttaatgtttcatgatttcatagagaattttatgcaaatttacattgatgatattgtggtaaaatcttcttcggaggaaagacattt 111  Q
    |||||||||||||||||||||| ||||| ||||||||||||||||||||  ||||||| ||||| ||||| || |||||||||||| | || ||||| ||    
T  22640210 agagagcgatgaatttaatgttccatgacttcatagagaattttatgcaggtttacatagatgacattgtagtgaaatcttcttcgaaagagagacactt 22640309  T
Q  112 gaaacatttacgccgatcgtttgaaaggatgaggcgatatggattgaaaatgaatccattaaaatgtgcatttggggtttgtgcatgtgattttctaggt 211  Q
    | |||||||||||||||| || ||||||||||||| ||||||||||||||||||||| ||||| ||||||||| ||||||||||| |||||||  ||||     
T  22640310 ggaacatttacgccgatcattcgaaaggatgaggcaatatggattgaaaatgaatcctttaaagtgtgcatttagggtttgtgcaggtgatttcttaggg 22640409  T
Q  212 ttcgtggtgcataaaaagggaatcgaaatcaaccagaacaaaaccaaggcaataatcgagaccaaagctccttctacgaagaaagagttgcagtcactat 311  Q
    ||||| |||||||||||||||||||| ||||||||||||||||||||||||| ||| |||||||| ||||||||||| ||||||||||| ||||| |||     
T  22640410 ttcgtcgtgcataaaaagggaatcgagatcaaccagaacaaaaccaaggcaaaaattgagaccaaggctccttctacaaagaaagagttacagtctctac 22640509  T
Q  312 taggaaaaatcaactttctcaggaggtttatatcaaatctaagtggcaagacacaagctttctcgccattactccgactaaagaaagaggatgttttcaa 411  Q
    ||||||| |||||||||||| | |||||||||||||| |||||||||||||||||||||||||| ||| ||||||||||||||||||| |||||||||||    
T  22640510 taggaaagatcaactttctccgaaggtttatatcaaacctaagtggcaagacacaagctttctcaccactactccgactaaagaaagatgatgttttcaa 22640609  T
Q  412 atgggagccggaacaccaaa 431  Q
    |||||| || || |||||||    
T  22640610 atgggaaccagagcaccaaa 22640629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 11 - 431
Target Start/End: Complemental strand, 23624548 - 23624128
Alignment:
Q  11 cagagagcgatgaatttaatgtttcatgatttcatagagaattttatgcaaatttacattgatgatattgtggtaaaatcttcttcggaggaaagacatt 110  Q
    ||||||||||||||||||||||| ||||| ||||||||||||||||||||  ||||||| ||||| ||||| || ||||||||||| || || ||||| |    
T  23624548 cagagagcgatgaatttaatgttacatgaattcatagagaattttatgcaggtttacatagatgacattgtagtgaaatcttcttcagaagagagacact 23624449  T
Q  111 tgaaacatttacgccgatcgtttgaaaggatgaggcgatatggattgaaaatgaatccattaaaatgtgcatttggggtttgtgcatgtgattttctagg 210  Q
    || |||||||||||||||| || ||||||||||| | ||||||||||||||||||||| | ||||||||||||||||||||||||| |||||||  ||||    
T  23624448 tggaacatttacgccgatcattcgaaaggatgagacaatatggattgaaaatgaatccttaaaaatgtgcatttggggtttgtgcaggtgatttcttagg 23624349  T
Q  211 tttcgtggtgcataaaaagggaatcgaaatcaaccagaacaaaaccaaggcaataatcgagaccaaagctccttctacgaagaaagagttgcagtcacta 310  Q
     | ||| |||||||||||||||||||| ||||| ||||||||||||||||||||||| |||||||| ||||||||||| ||||||||||| ||||| |||    
T  23624348 gtccgtcgtgcataaaaagggaatcgagatcaagcagaacaaaaccaaggcaataattgagaccaaggctccttctacaaagaaagagttacagtctcta 23624249  T
Q  311 ttaggaaaaatcaactttctcaggaggtttatatcaaatctaagtggcaagacacaagctttctcgccattactccgactaaagaaagaggatgttttca 410  Q
     ||||||| |||||||||||| | |||||||||||||| |||||||||||||||||||||||||| ||| ||||||||||||||||||| ||||||||||    
T  23624248 ctaggaaagatcaactttctccgaaggtttatatcaaacctaagtggcaagacacaagctttctcaccactactccgactaaagaaagatgatgttttca 23624149  T
Q  411 aatgggagccggaacaccaaa 431  Q
    ||||||| || || |||||||    
T  23624148 aatgggaaccagagcaccaaa 23624128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 151; E-Value: 1e-79
Query Start/End: Original strand, 20 - 431
Target Start/End: Complemental strand, 23812282 - 23811869
Alignment:
Q  20 atgaatttaatgtttcatgatttcatagagaattttatgcaaatttacattgatgatattgtggtaaaatcttcttcggaggaaagacatttgaaacatt 119  Q
    |||||||  ||||||||||| ||||||||| |||| |||||| | ||||| |||||||| ||||||||||| ||||| || || | ||| ||  | || |    
T  23812282 atgaattcgatgtttcatgacttcatagaggatttcatgcaagtctacatcgatgatatcgtggtaaaatcatcttcagaagataaacacttagatcact 23812183  T
Q  120 tacgccgatcgtttgaaaggatgaggcgatatggattgaaaatgaatccattaaaatgtgcatttggggtttgtgcatgtgattttctaggtttcgtggt 219  Q
    |||| ||||| || ||||||||||||| ||||||||| |||||||||||||||||||||||| |||| |||| |||| |||||||| ||||||| || ||    
T  23812182 tacgacgatcattcgaaaggatgaggcaatatggattaaaaatgaatccattaaaatgtgcaattggtgtttctgcaggtgattttttaggttttgtcgt 23812083  T
Q  220 gcataaaaagggaatcgaaatcaaccagaacaaaaccaaggcaataatcgagaccaaagctccttctacgaagaaagagttgcagtcactattaggaaaa 319  Q
     || || || ||||| || || || || |||||||||||||||||||| |||||  |||| ||||| || |||||||||||||||||  | |||||||||    
T  23812082 ccacaagaaaggaattgagattaatcaaaacaaaaccaaggcaataatggagactcaagccccttcgacaaagaaagagttgcagtctttgttaggaaaa 23811983  T
Q  320 atcaactttctcaggag--gtttatatcaaatctaagtggcaagacacaagctttctcgccattactccgactaaagaaagaggatgttttcaaatggga 417  Q
    |||||||||||||| ||  ||||||||| || ||||||||||| ||||||||||| ||||||||||| || || |||||||| ||||| ||||||  |||    
T  23811982 atcaactttctcagaaggtgtttatatcgaacctaagtggcaaaacacaagctttatcgccattacttcgtctgaagaaagaagatgtgttcaaactgga 23811883  T
Q  418 gccggaacaccaaa 431  Q
     || ||||||||||    
T  23811882 accagaacaccaaa 23811869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 126 - 431
Target Start/End: Complemental strand, 25114320 - 25114015
Alignment:
Q  126 gatcgtttgaaaggatgaggcgatatggattgaaaatgaatccattaaaatgtgcatttggggtttgtgcatgtgattttctaggtttcgtggtgcataa 225  Q
    ||||||| ||||| |||||   ||| |||||||||||||||||| |||||||||| ||||| ||  |||||   || ||  ||||||| || ||||||||    
T  25114320 gatcgttcgaaagaatgagaaaataaggattgaaaatgaatccagtaaaatgtgcttttggtgtgcgtgcagacgacttcttaggttttgttgtgcataa 25114221  T
Q  226 aaagggaatcgaaatcaaccagaacaaaaccaaggcaataatcgagaccaaagctccttctacgaagaaagagttgcagtcactattaggaaaaatcaac 325  Q
    |||    || ||||| || || |||||||| ||||||||  | ||||| |||   ||||| || || |||||| | || ||  | || ||||||||||||    
T  25114220 aaacaacattgaaattaatcaaaacaaaacaaaggcaattttggagacaaaactgccttcgacaaaaaaagagcttcaatctttgttgggaaaaatcaac 25114121  T
Q  326 tttctcaggaggtttatatcaaatctaagtggcaagacacaagctttctcgccattactccgactaaagaaagaggatgttttcaaatgggagccggaac 425  Q
    |||||||| || || || || ||||||| |||||| ||  ||| |||||| ||| || | ||||| |||||| | ||||||||||||||||| || ||||    
T  25114120 tttctcagaagattcatttcgaatctaaatggcaaaactgaagttttctcaccactattgcgactgaagaaataagatgttttcaaatgggaaccagaac 25114021  T
Q  426 accaaa 431  Q
    | ||||    
T  25114020 atcaaa 25114015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 14 - 94
Target Start/End: Complemental strand, 25114432 - 25114352
Alignment:
Q  14 agagcgatgaatttaatgtttcatgatttcatagagaattttatgcaaatttacattgatgatattgtggtaaaatcttct 94  Q
    ||||| |||||||  |||||||||||||| |||| ||| ||||||||||||||||| ||||| ||||| || ||||| |||    
T  25114432 agagcaatgaattctatgtttcatgattttatagggaaatttatgcaaatttacatagatgacattgttgttaaatcatct 25114352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0107 (Bit Score: 361; Significance: 0; HSPs: 1)
Name: scaffold0107
Description:

Target: scaffold0107; HSP #1
Raw Score: 361; E-Value: 0
Query Start/End: Original strand, 11 - 431
Target Start/End: Original strand, 6038 - 6458
Alignment:
Q  11 cagagagcgatgaatttaatgtttcatgatttcatagagaattttatgcaaatttacattgatgatattgtggtaaaatcttcttcggaggaaagacatt 110  Q
    ||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||| || ||||||||||    
T  6038 cagagagcgatgaatttaatgtttcatgatttcatagaggactttatgcaaatttacattgatgatattgtggtaaaatcttcttcagaagaaagacatt 6137  T
Q  111 tgaaacatttacgccgatcgtttgaaaggatgaggcgatatggattgaaaatgaatccattaaaatgtgcatttggggtttgtgcatgtgattttctagg 210  Q
    || |||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  6138 tggaacatttacgccgatcttttgaaaggatgaggcaatatggattgaaaatgaatccattaaaatgtgcatttggggtttgtgcaggtgattttctagg 6237  T
Q  211 tttcgtggtgcataaaaagggaatcgaaatcaaccagaacaaaaccaaggcaataatcgagaccaaagctccttctacgaagaaagagttgcagtcacta 310  Q
    |||||| || ||||||||||||||||| |||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||    
T  6238 tttcgtagttcataaaaagggaatcgagatcaaccagaacaaaaccaaggcaataaccaagaccaaagctccttctacgaagaaagagttgcagtcacta 6337  T
Q  311 ttaggaaaaatcaactttctcaggaggtttatatcaaatctaagtggcaagacacaagctttctcgccattactccgactaaagaaagaggatgttttca 410  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  6338 ttaggaaaaatcaactttctcaggaggtttatatcaaatctaagtggcaagacacaagctttctcgccattactccgattaaagaaagaggatgttttca 6437  T
Q  411 aatgggagccggaacaccaaa 431  Q
    ||||||||| |||||||||||    
T  6438 aatgggagcaggaacaccaaa 6458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0026 (Bit Score: 355; Significance: 0; HSPs: 1)
Name: scaffold0026
Description:

Target: scaffold0026; HSP #1
Raw Score: 355; E-Value: 0
Query Start/End: Original strand, 6 - 432
Target Start/End: Complemental strand, 137349 - 136923
Alignment:
Q  6 agtagcagagagcgatgaatttaatgtttcatgatttcatagagaattttatgcaaatttacattgatgatattgtggtaaaatcttcttcggaggaaag 105  Q
    |||| ||||||||||||||||||||||||||||||||||||||  ||||||||||  |||||||||||||||||||||||||||||||||||||||| ||    
T  137349 agtaccagagagcgatgaatttaatgtttcatgatttcatagaagattttatgcaggtttacattgatgatattgtggtaaaatcttcttcggaggatag 137250  T
Q  106 acatttgaaacatttacgccgatcgtttgaaaggatgaggcgatatggattgaaaatgaatccattaaaatgtgcatttggggtttgtgcatgtgatttt 205  Q
    ||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  137249 acatttggaacatttacgccgatcgtttgaaaggaggaggcgatatggattgaaaatgaatccattaaaatgtgcatttggggtttgtgcaggtgatttt 137150  T
Q  206 ctaggtttcgtggtgcataaaaagggaatcgaaatcaaccagaacaaaaccaaggcaataatcgagaccaaagctccttctacgaagaaagagttgcagt 305  Q
    |||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  137149 ctaggttttgtggtgcataaaaagggaatcgaaatcaaccagaataaaaccaaggcaataatcgagaccaaagctccttctacgaagaaagagttgcagt 137050  T
Q  306 cactattaggaaaaatcaactttctcaggaggtttatatcaaatctaagtggcaagacacaagctttctcgccattactccgactaaagaaagaggatgt 405  Q
    ||||||||||||| |||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||| |||||    
T  137049 cactattaggaaagatcaactttctcagaaggtttatatcaaatttaagtggcaagacacaagctttctcgcctttactccgactaaagaaagatgatgt 136950  T
Q  406 tttcaaatgggagccggaacaccaaac 432  Q
    ||||||||||||||| || ||||||||    
T  136949 tttcaaatgggagccagagcaccaaac 136923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 335; Significance: 0; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 335; E-Value: 0
Query Start/End: Original strand, 13 - 431
Target Start/End: Complemental strand, 22803079 - 22802661
Alignment:
Q  13 gagagcgatgaatttaatgtttcatgatttcatagagaattttatgcaaatttacattgatgatattgtggtaaaatcttcttcggaggaaagacatttg 112  Q
    ||||||||||||||||||||| ||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22803079 gagagcgatgaatttaatgttccatgatttcatagaggattttatgcaagtttacattgatgatattgtggtaaaatcttcttcggaggaaagacatttg 22802980  T
Q  113 aaacatttacgccgatcgtttgaaaggatgaggcgatatggattgaaaatgaatccattaaaatgtgcatttggggtttgtgcatgtgattttctaggtt 212  Q
     | |||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||    
T  22802979 gatcatttacgccgatcatttgaaaggatgaggcgatatgggttgaaaatgaatccattaaagtgtgcatttggggtttgtgcaggtgattttctaggtt 22802880  T
Q  213 tcgtggtgcataaaaagggaatcgaaatcaaccagaacaaaaccaaggcaataatcgagaccaaagctccttctacgaagaaagagttgcagtcactatt 312  Q
    ||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||    
T  22802879 tcgtggtgcataaaaagggaatcaaaatcaactagaacaaaaccaaggcaataatcgagaccaaagctccttctacaaagaaagagttgcagtcattatt 22802780  T
Q  313 aggaaaaatcaactttctcaggaggtttatatcaaatctaagtggcaagacacaagctttctcgccattactccgactaaagaaagaggatgttttcaaa 412  Q
     |||||||||||||||||| ||||||||||||||||| ||||||| ||||||||||||||||| ||||||||||||||||||||||| ||||||||||||    
T  22802779 gggaaaaatcaactttctccggaggtttatatcaaatttaagtggtaagacacaagctttctcaccattactccgactaaagaaagatgatgttttcaaa 22802680  T
Q  413 tgggagccggaacaccaaa 431  Q
    |||||||| || |||||||    
T  22802679 tgggagccagagcaccaaa 22802661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 11 - 431
Target Start/End: Original strand, 21295853 - 21296273
Alignment:
Q  11 cagagagcgatgaatttaatgtttcatgatttcatagagaattttatgcaaatttacattgatgatattgtggtaaaatcttcttcggaggaaagacatt 110  Q
    |||||||||||||||| |||||||||||||||| ||||   ||||||||||||||| ||||||||||||||||||||||||||||| ||||||| ||| |    
T  21295853 cagagagcgatgaattcaatgtttcatgatttcgtagaagcttttatgcaaatttatattgatgatattgtggtaaaatcttcttcagaggaaaaacact 21295952  T
Q  111 tgaaacatttacgccgatcgtttgaaaggatgaggcgatatggattgaaaatgaatccattaaaatgtgcatttggggtttgtgcatgtgattttctagg 210  Q
    ||  ||||||||||||||| |||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||| ||||    
T  21295953 tgggacatttacgccgatcttttgaaaggatgaggcaatatggactgaaaatgaatccattaaaatgtgcatttggggtttgtgcaggtgattttttagg 21296052  T
Q  211 tttcgtggtgcataaaaagggaatcgaaatcaaccagaacaaaaccaaggcaataatcgagaccaaagctccttctacgaagaaagagttgcagtcacta 310  Q
    ||||||||| |||||||| |||||||||||||||||||| ||||||||||||||||| |||||  |||||||||||||||||||||||||||||||| ||    
T  21296053 tttcgtggttcataaaaaaggaatcgaaatcaaccagaataaaaccaaggcaataattgagactcaagctccttctacgaagaaagagttgcagtcatta 21296152  T
Q  311 ttaggaaaaatcaactttctcaggaggtttatatcaaatctaagtggcaagacacaagctttctcgccattactccgactaaagaaagaggatgttttca 410  Q
    ||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||| | |||||||| ||| |||| |    
T  21296153 ttaggaaaaataaactttctcaggaggtttatatcgaatctaagtggcaagacacaagcattctcgccattactccgattgaagaaagaagatattttta 21296252  T
Q  411 aatgggagccggaacaccaaa 431  Q
    |||||||||| || |||||||    
T  21296253 aatgggagccagagcaccaaa 21296273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 11 - 431
Target Start/End: Complemental strand, 41378688 - 41378268
Alignment:
Q  11 cagagagcgatgaatttaatgtttcatgatttcatagagaattttatgcaaatttacattgatgatattgtggtaaaatcttcttcggaggaaagacatt 110  Q
    ||||||||||||||||||||||| ||||| ||||||||||||||||||||| ||||||| ||||| ||||| || |||||||||||||| |||||||| |    
T  41378688 cagagagcgatgaatttaatgttacatgacttcatagagaattttatgcaagtttacatagatgacattgtagtgaaatcttcttcggaagaaagacact 41378589  T
Q  111 tgaaacatttacgccgatcgtttgaaaggatgaggcgatatggattgaaaatgaatccattaaaatgtgcatttggggtttgtgcatgtgattttctagg 210  Q
    || | |||||||||| ||| || ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||  ||||    
T  41378588 tggagcatttacgccaatcattcgaaaggatgaggcaatatggattgaaaatgaatccattaaaatgtgcatttggggtttgtgcaggtgatttcttagg 41378489  T
Q  211 tttcgtggtgcataaaaagggaatcgaaatcaaccagaacaaaaccaaggcaataatcgagaccaaagctccttctacgaagaaagagttgcagtcacta 310  Q
     ||||| ||||| ||||| |||||| | |||||||||||||||||||| |||||||||||||| |||||||| ||||| |||||||| || ||||| |||    
T  41378488 gttcgttgtgcacaaaaaaggaatcaagatcaaccagaacaaaaccaaagcaataatcgagactaaagctccctctacaaagaaagaattacagtctcta 41378389  T
Q  311 ttaggaaaaatcaactttctcaggaggtttatatcaaatctaagtggcaagacacaagctttctcgccattactccgactaaagaaagaggatgttttca 410  Q
    ||||||||||||||||||||| | || |||||||||||||||||||||| ||||||||||||||| ||| |||| ||| | |||||||| ||||||||||    
T  41378388 ttaggaaaaatcaactttctccgaagatttatatcaaatctaagtggcaggacacaagctttctcaccactacttcgattgaagaaagatgatgttttca 41378289  T
Q  411 aatgggagccggaacaccaaa 431  Q
    ||||||| || || |||||||    
T  41378288 aatgggaacctgagcaccaaa 41378268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 11 - 431
Target Start/End: Complemental strand, 22692512 - 22692103
Alignment:
Q  11 cagagagcgatgaatttaatgtttcatgatttcatagagaattttatgcaaatttacattgatgatattgtggtaaaatcttcttcggaggaaagacatt 110  Q
    ||||||||||||||||||||||||||||||||| ||||   ||||||||||||||| ||||||||||||||||| ||||||||||| ||| | | |||||    
T  22692512 cagagagcgatgaatttaatgtttcatgatttcttagaagtttttatgcaaatttatattgatgatattgtggttaaatcttcttcagagtataaacatt 22692413  T
Q  111 tgaaacatttacgccgatcgtttgaaaggatgaggcgatatggattgaaaatgaatccattaaaatgtgcatttggggtttgtgcatgtgattttctagg 210  Q
    ||  ||||||| ||| ||  |||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||| ||||    
T  22692412 tgggacatttatgcctattttttgaaaggatgaggcaatatggactgaaaatgaatccattaaaatgtgcatttggggtttgtgcaggtgattttttagg 22692313  T
Q  211 tttcgtggtgcataaaaagggaatcgaaatcaaccagaacaaaaccaaggcaataatcgagaccaaagctccttctacgaagaaagagttgcagtcacta 310  Q
    ||||||||| |||||||| ||||||||||||||| ||||||||||||| || |||||| ||||  | |||||||||||||||||||||||||||||  ||    
T  22692312 tttcgtggttcataaaaaaggaatcgaaatcaactagaacaaaaccaaagccataatcaagactcaggctccttctacgaagaaagagttgcagtcgtta 22692213  T
Q  311 ttaggaaaaatcaactttctcaggaggtttatatcaaatctaagtggcaagacacaagctttctcgccattactccgactaaagaaagaggatgttttca 410  Q
    ||||| || |||  |||||        |||| |||  |  ||| |||||  ||||||||||||||||||||||||||| |||||||||| ||| |||| |    
T  22692212 ttagggaatatcttctttc--------ttta-atcgga-gtaa-tggcagaacacaagctttctcgccattactccgattaaagaaagaagatattttta 22692124  T
Q  411 aatgggagccggaacaccaaa 431  Q
    |||||||||| ||||||||||    
T  22692123 aatgggagccagaacaccaaa 22692103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 333; Significance: 0; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 333; E-Value: 0
Query Start/End: Original strand, 11 - 431
Target Start/End: Original strand, 16212142 - 16212562
Alignment:
Q  11 cagagagcgatgaatttaatgtttcatgatttcatagagaattttatgcaaatttacattgatgatattgtggtaaaatcttcttcggaggaaagacatt 110  Q
    |||||||| |||||||||||||| ||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||    
T  16212142 cagagagcaatgaatttaatgttccatgatttcatagaggattttatgcaaatttacattgatgacattgtggtaaaatcttctttggaggaaagacatt 16212241  T
Q  111 tgaaacatttacgccgatcgtttgaaaggatgaggcgatatggattgaaaatgaatccattaaaatgtgcatttggggtttgtgcatgtgattttctagg 210  Q
    || |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  16212242 tggaacatttacgccgatcatttgaaaggatgaggcgatatggattgaaaatgaatccattaaaatgtgcatttggggtttgtgcaggtgattttctagg 16212341  T
Q  211 tttcgtggtgcataaaaagggaatcgaaatcaaccagaacaaaaccaaggcaataatcgagaccaaagctccttctacgaagaaagagttgcagtcacta 310  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||| ||||||||| ||    
T  16212342 tttcgtggtgcataaaaagggaatcgaaatcaaccagaacaaaaccaaagcaataattgagaccaaagctccttctacgaagaaagaattgcagtcatta 16212441  T
Q  311 ttaggaaaaatcaactttctcaggaggtttatatcaaatctaagtggcaagacacaagctttctcgccattactccgactaaagaaagaggatgttttca 410  Q
    || |||||||||||||||||| |||| ||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  16212442 ttgggaaaaatcaactttctccggagatttatatcaaacctaagtggtaagacacaagctttctcgccattactccgactaaagaaagatgatgttttca 16212541  T
Q  411 aatgggagccggaacaccaaa 431  Q
    | ||||| || || |||||||    
T  16212542 agtgggaaccagagcaccaaa 16212562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 14 - 415
Target Start/End: Complemental strand, 19033466 - 19033065
Alignment:
Q  14 agagcgatgaatttaatgtttcatgatttcatagagaattttatgcaaatttacattgatgatattgtggtaaaatcttcttcggaggaaagacatttga 113  Q
    |||||||||||||||||||| ||||| |||||||| |||||||||||  ||||||||||||| ||||| || |||||||||||||| ||||||||||||     
T  19033466 agagcgatgaatttaatgttccatgacttcatagaaaattttatgcaggtttacattgatgacattgtagtgaaatcttcttcggaagaaagacatttgg 19033367  T
Q  114 aacatttacgccgatcgtttgaaaggatgaggcgatatggattgaaaatgaatccattaaaatgtgcatttggggtttgtgcatgtgattttctaggttt 213  Q
    |||||||||||| ||| || ||||||||||||| | ||||||||||||||||||| ||||||||||||||||||||||||||| |||||||  |||||||    
T  19033366 aacatttacgccaatcattcgaaaggatgaggcaaaatggattgaaaatgaatcctttaaaatgtgcatttggggtttgtgcaggtgatttcttaggttt 19033267  T
Q  214 cgtggtgcataaaaagggaatcgaaatcaaccagaacaaaaccaaggcaataatcgagaccaaagctccttctacgaagaaagagttgcagtcactatta 313  Q
    ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||| ||| |     
T  19033266 cgtcgtgcataaaaagggaatcgaaatcaaccagaacaaaaccaaggcaataatcgagaccaaagctccttctacaaagagagagttgcagtctctactg 19033167  T
Q  314 ggaaaaatcaactttctcaggaggtttatatcaaatctaagtggcaagacacaagctttctcgccattactccgactaaagaaagaggatgttttcaaat 413  Q
    |||||||||||||||||| |||||||||||||||| |||||||| ||||||||||||||||| ||||||||||||||||||||||| |||||||||||||    
T  19033166 ggaaaaatcaactttctccggaggtttatatcaaacctaagtggtaagacacaagctttctcaccattactccgactaaagaaagatgatgttttcaaat 19033067  T
Q  414 gg 415  Q
    ||    
T  19033066 gg 19033065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 314 - 431
Target Start/End: Complemental strand, 17806686 - 17806569
Alignment:
Q  314 ggaaaaatcaactttctcaggaggtttatatcaaatctaagtggcaagacacaagctttctcgccattactccgactaaagaaagaggatgttttcaaat 413  Q
    |||||||||||||||||||| || ||||| || |||||||||||||  ||  ||| |||||||| | | || ||||| |||||||| |||||||||||||    
T  17806686 ggaaaaatcaactttctcagaagatttatttcgaatctaagtggcagaactgaagatttctcgcaactgcttcgactgaagaaagaagatgttttcaaat 17806587  T
Q  414 gggagccggaacaccaaa 431  Q
    |||| || ||||| ||||    
T  17806586 gggaaccagaacatcaaa 17806569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 148 - 255
Target Start/End: Original strand, 13779244 - 13779351
Alignment:
Q  148 atatggattgaaaatgaatccattaaaatgtgcatttggggtttgtgcatgtgattttctaggtttcgtggtgcataaaaagggaatcgaaatcaaccag 247  Q
    ||||||||| |||||||||||||| |||||||| ||||| ||| ||||| |||||||  |||||||||| ||||| ||||| || || ||||| || ||     
T  13779244 atatggatttaaaatgaatccattgaaatgtgcctttggtgttggtgcaggtgatttcttaggtttcgttgtgcacaaaaaaggcattgaaataaatcaa 13779343  T
Q  248 aacaaaac 255  Q
    ||||||||    
T  13779344 aacaaaac 13779351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 134 - 228
Target Start/End: Complemental strand, 20191130 - 20191036
Alignment:
Q  134 gaaaggatgaggcgatatggattgaaaatgaatccattaaaatgtgcatttggggtttgtgcatgtgattttctaggtttcgtggtgcataaaaa 228  Q
    |||||||||||   |||||||||||||||||||||||| |||||| | ||||| ||| ||||| |||||||  ||||||| || ||||| |||||    
T  20191130 gaaaggatgagaaaatatggattgaaaatgaatccattgaaatgttcctttggtgttcgtgcaggtgatttcttaggttttgttgtgcacaaaaa 20191036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 134 - 228
Target Start/End: Original strand, 22144861 - 22144955
Alignment:
Q  134 gaaaggatgaggcgatatggattgaaaatgaatccattaaaatgtgcatttggggtttgtgcatgtgattttctaggtttcgtggtgcataaaaa 228  Q
    |||||||||||   |||||||||||||||||||||||| |||||| | ||||| ||| ||||| |||||||  ||||||| || ||||| |||||    
T  22144861 gaaaggatgagaaaatatggattgaaaatgaatccattgaaatgttcctttggtgttcgtgcaggtgatttcttaggttttgttgtgcacaaaaa 22144955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 20 - 93
Target Start/End: Complemental strand, 16164173 - 16164100
Alignment:
Q  20 atgaatttaatgtttcatgatttcatagagaattttatgcaaatttacattgatgatattgtggtaaaatcttc 93  Q
    ||||||| ||||||||| ||||| || || || |||||||||||||| || ||||||||| |||||||||||||    
T  16164173 atgaattcaatgtttcacgattttattgataaatttatgcaaatttagatggatgatattatggtaaaatcttc 16164100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 14 - 90
Target Start/End: Complemental strand, 17806985 - 17806909
Alignment:
Q  14 agagcgatgaatttaatgtttcatgatttcatagagaattttatgcaaatttacattgatgatattgtggtaaaatc 90  Q
    ||||| |||||||  |||||||||||||| |||| |||  |||||||||||||||| ||||| ||||| || |||||    
T  17806985 agagcaatgaattctatgtttcatgattttatagggaaagttatgcaaatttacatagatgacattgttgtcaaatc 17806909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 305; Significance: 1e-171; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 305; E-Value: 1e-171
Query Start/End: Original strand, 11 - 431
Target Start/End: Complemental strand, 22341872 - 22341452
Alignment:
Q  11 cagagagcgatgaatttaatgtttcatgatttcatagagaattttatgcaaatttacattgatgatattgtggtaaaatcttcttcggaggaaagacatt 110  Q
    |||||||||||||||| |||||| ||||| |||||||||  |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  22341872 cagagagcgatgaattcaatgttccatgacttcatagaggtttttatgcaaatttacattgatgacattgtggtaaaatcttcttcggaggaaagacatt 22341773  T
Q  111 tgaaacatttacgccgatcgtttgaaaggatgaggcgatatggattgaaaatgaatccattaaaatgtgcatttggggtttgtgcatgtgattttctagg 210  Q
    || |||||||||||| ||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||| ||||    
T  22341772 tggaacatttacgccaatcatttgaaaggatgaggcgatatggattgaaaatgaatcctttaaaatgtgcatttggggtttgtgcaggtgattttttagg 22341673  T
Q  211 tttcgtggtgcataaaaagggaatcgaaatcaaccagaacaaaaccaaggcaataatcgagaccaaagctccttctacgaagaaagagttgcagtcacta 310  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||| |||||| ||    
T  22341672 tttcgtagtgcataaaaagggaatcgaaatcaaccagaacaaaaccaaggcaataattaagaccaaagctccttctacgaagaaagagttacagtcatta 22341573  T
Q  311 ttaggaaaaatcaactttctcaggaggtttatatcaaatctaagtggcaagacacaagctttctcgccattactccgactaaagaaagaggatgttttca 410  Q
     | | |||||||||||||||| ||||||||||||||||||| ||||| ||||||||||||||||| ||||||||||||||||||||||| ||||||||||    
T  22341572 ctggaaaaaatcaactttctccggaggtttatatcaaatctgagtggtaagacacaagctttctcaccattactccgactaaagaaagatgatgttttca 22341473  T
Q  411 aatgggagccggaacaccaaa 431  Q
    | ||||| || || |||||||    
T  22341472 agtgggaaccagagcaccaaa 22341452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 305; E-Value: 1e-171
Query Start/End: Original strand, 11 - 431
Target Start/End: Complemental strand, 22347055 - 22346635
Alignment:
Q  11 cagagagcgatgaatttaatgtttcatgatttcatagagaattttatgcaaatttacattgatgatattgtggtaaaatcttcttcggaggaaagacatt 110  Q
    |||||||||||||||| |||||| ||||| |||||||||  |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  22347055 cagagagcgatgaattcaatgttccatgacttcatagaggtttttatgcaaatttacattgatgacattgtggtaaaatcttcttcggaggaaagacatt 22346956  T
Q  111 tgaaacatttacgccgatcgtttgaaaggatgaggcgatatggattgaaaatgaatccattaaaatgtgcatttggggtttgtgcatgtgattttctagg 210  Q
    || |||||||||||| ||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||| ||||    
T  22346955 tggaacatttacgccaatcatttgaaaggatgaggcgatatggattgaaaatgaatcctttaaaatgtgcatttggggtttgtgcaggtgattttttagg 22346856  T
Q  211 tttcgtggtgcataaaaagggaatcgaaatcaaccagaacaaaaccaaggcaataatcgagaccaaagctccttctacgaagaaagagttgcagtcacta 310  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||| |||||| ||    
T  22346855 tttcgtagtgcataaaaagggaatcgaaatcaaccagaacaaaaccaaggcaataattaagaccaaagctccttctacgaagaaagagttacagtcatta 22346756  T
Q  311 ttaggaaaaatcaactttctcaggaggtttatatcaaatctaagtggcaagacacaagctttctcgccattactccgactaaagaaagaggatgttttca 410  Q
     | | |||||||||||||||| ||||||||||||||||||| ||||| ||||||||||||||||| ||||||||||||||||||||||| ||||||||||    
T  22346755 ctggaaaaaatcaactttctccggaggtttatatcaaatctgagtggtaagacacaagctttctcaccattactccgactaaagaaagatgatgttttca 22346656  T
Q  411 aatgggagccggaacaccaaa 431  Q
    | ||||| || || |||||||    
T  22346655 agtgggaaccagagcaccaaa 22346635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 11 - 431
Target Start/End: Original strand, 22069654 - 22070075
Alignment:
Q  11 cagagagcgatgaatttaatgtttcatgatttcatagagaattttatgcaaatttacattgatgatattgtggtaaaatcttcttcggaggaaagacatt 110  Q
    ||||||||||||||||||||||||||||||||||||||  |||||||||||||||| ||||||||||||||||||||||||||||| ||||| | ||| |    
T  22069654 cagagagcgatgaatttaatgtttcatgatttcatagaagattttatgcaaatttatattgatgatattgtggtaaaatcttcttcagaggagaaacact 22069753  T
Q  111 tgaaacatttacgccgatcgtttgaaaggatgaggcgatatggattgaaaatgaatccattaaaatgtgcatttggggtttgtgcatgtgattttctagg 210  Q
    ||  ||||||||||||||| |||| ||||||||||| |||| || |||||||||||||||||||||||||||||||||||||| || |||||||| ||||    
T  22069754 tgggacatttacgccgatcttttggaaggatgaggcaatatagactgaaaatgaatccattaaaatgtgcatttggggtttgtacaggtgattttttagg 22069853  T
Q  211 tttcgtggtgcat-aaaaagggaatcgaaatcaaccagaacaaaaccaaggcaataatcgagaccaaagctccttctacgaagaaagagttgcagtcact 309  Q
    ||||||||| ||| ||||| |||||||||||||||||||||||||||||||||||||| |||||  ||||||||||||||||||||||||| |||||  |    
T  22069854 tttcgtggttcataaaaaaaggaatcgaaatcaaccagaacaaaaccaaggcaataattgagactcaagctccttctacgaagaaagagttacagtcgtt 22069953  T
Q  310 attaggaaaaatcaactttctcaggaggtttatatcaaatctaagtggcaagacacaagctttctcgccattactccgactaaagaaagaggatgttttc 409  Q
    ||||||||||||||||||||| ||||| |||||||| ||||||||||||||||||||||||||||||||| |||||||| | |||||||| |||  |||     
T  22069954 attaggaaaaatcaactttcttaggagatttatatcgaatctaagtggcaagacacaagctttctcgccagtactccgattgaagaaagaagatactttt 22070053  T
Q  410 aaatgggagccggaacaccaaa 431  Q
    ||||||||||| || |||||||    
T  22070054 aaatgggagccagagcaccaaa 22070075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 299; Significance: 1e-168; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 299; E-Value: 1e-168
Query Start/End: Original strand, 11 - 417
Target Start/End: Original strand, 21512894 - 21513300
Alignment:
Q  11 cagagagcgatgaatttaatgtttcatgatttcatagagaattttatgcaaatttacattgatgatattgtggtaaaatcttcttcggaggaaagacatt 110  Q
    ||||||| ||||||||||||||| ||||| |||||||| |||||||||||| ||||||||||||| ||||||||||||||||||||||| ||||||||||    
T  21512894 cagagagtgatgaatttaatgttccatgacttcatagaaaattttatgcaagtttacattgatgacattgtggtaaaatcttcttcggaagaaagacatt 21512993  T
Q  111 tgaaacatttacgccgatcgtttgaaaggatgaggcgatatggattgaaaatgaatccattaaaatgtgcatttggggtttgtgcatgtgattttctagg 210  Q
    || |||||||||||| ||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| | |||||||  ||||    
T  21512994 tggaacatttacgccaatcctttgaaaggatgaggcgatatggattgaaaatgaatcctttaaaatgtgcatttggggtttgtgtaggtgatttcttagg 21513093  T
Q  211 tttcgtggtgcataaaaagggaatcgaaatcaaccagaacaaaaccaaggcaataatcgagaccaaagctccttctacgaagaaagagttgcagtcacta 310  Q
    |||||| ||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||| ||    
T  21513094 tttcgtagtgcataaaaagggaatcgaaatcaacgagaacaaaaccaaggcaataattgagaccaaagctccttctacgaagaaagagttgcaatcatta 21513193  T
Q  311 ttaggaaaaatcaactttctcaggaggtttatatcaaatctaagtggcaagacacaagctttctcgccattactccgactaaagaaagaggatgttttca 410  Q
     | |||||||| ||||||||| ||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||| ||||||||||    
T  21513194 ctgggaaaaattaactttctccggaggtttatatcaaatctaagtggtaagacacaagctttctcaccattactccgactaaagaaagatgatgttttca 21513293  T
Q  411 aatggga 417  Q
    |||||||    
T  21513294 aatggga 21513300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 126 - 359
Target Start/End: Complemental strand, 22850402 - 22850169
Alignment:
Q  126 gatcgtttgaaaggatgaggcgatatggattgaaaatgaatccattaaaatgtgcatttggggtttgtgcatgtgattttctaggtttcgtggtgcataa 225  Q
    ||||||| ||||| |||||   |||||||||||||||||||||||| |||||||| ||||| ||  ||||||| || ||  ||||||| || ||||| ||    
T  22850402 gatcgttcgaaagaatgagaaaatatggattgaaaatgaatccattgaaatgtgcttttggtgtgcgtgcatgcgacttcttaggttttgttgtgcacaa 22850303  T
Q  226 aaagggaatcgaaatcaaccagaacaaaaccaaggcaataatcgagaccaaagctccttctacgaagaaagagttgcagtcactattaggaaaaatcaac 325  Q
    ||| || || ||||| || || |||||||| |||| |||  | ||||| ||| | ||||| || || |||||| | || ||  | || |||||||| |||    
T  22850302 aaaaggcattgaaattaatcaaaacaaaacaaaggaaattttggagacaaaaccgccttcgacaaataaagagcttcaatctttgttgggaaaaattaac 22850203  T
Q  326 tttctcaggaggtttatatcaaatctaagtggca 359  Q
    |||||||| || || || || |||||||||||||    
T  22850202 tttctcagaagattcatttcgaatctaagtggca 22850169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 127 - 255
Target Start/End: Complemental strand, 26864672 - 26864544
Alignment:
Q  127 atcgtttgaaaggatgaggcgatatggattgaaaatgaatccattaaaatgtgcatttggggtttgtgcatgtgattttctaggtttcgtggtgcataaa 226  Q
    |||||||||||| || ||   ||||||||||||||||||||||||||||| ||||||||| ||  ||||| |||||||  |||||||  | || ||||||    
T  26864672 atcgtttgaaagaattagaaaatatggattgaaaatgaatccattaaaatttgcatttggtgtacgtgcaggtgatttcttaggttttattgttcataaa 26864573  T
Q  227 aagggaatcgaaatcaaccagaacaaaac 255  Q
    || || || || || || |||||||||||    
T  26864572 aaaggcattgagattaatcagaacaaaac 26864544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 366 - 417
Target Start/End: Complemental strand, 26864470 - 26864419
Alignment:
Q  366 aagctttctcgccattactccgactaaagaaagaggatgttttcaaatggga 417  Q
    |||||||||||||||| || ||||| |||||||| |||||||||||||||||    
T  26864470 aagctttctcgccattgcttcgactgaagaaagaagatgttttcaaatggga 26864419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0241 (Bit Score: 293; Significance: 1e-164; HSPs: 1)
Name: scaffold0241
Description:

Target: scaffold0241; HSP #1
Raw Score: 293; E-Value: 1e-164
Query Start/End: Original strand, 11 - 431
Target Start/End: Original strand, 13358 - 13778
Alignment:
Q  11 cagagagcgatgaatttaatgtttcatgatttcatagagaattttatgcaaatttacattgatgatattgtggtaaaatcttcttcggaggaaagacatt 110  Q
    |||||||||||||||| |||||| ||||| ||||||||| ||||||||||| |||| || ||||| |||||||||||||||||||||||||||| |||||    
T  13358 cagagagcgatgaattcaatgttccatgacttcatagaggattttatgcaagtttatatcgatgacattgtggtaaaatcttcttcggaggaaaaacatt 13457  T
Q  111 tgaaacatttacgccgatcgtttgaaaggatgaggcgatatggattgaaaatgaatccattaaaatgtgcatttggggtttgtgcatgtgattttctagg 210  Q
    || |||||||||| ||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||    
T  13458 tggaacatttacgtcgatcatttgaaaggatgaggcgatatggattgaaaatgaatcctttaaaatgtgcatttggggtttgtgcaggtgattttctagg 13557  T
Q  211 tttcgtggtgcataaaaagggaatcgaaatcaaccagaacaaaaccaaggcaataatcgagaccaaagctccttctacgaagaaagagttgcagtcacta 310  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||| ||||||||| ||    
T  13558 tttcgtagtgcataaaaagggaatcgaaatcaaccagaacaaaaccaaggcaataattgagaccaaagttccttctacgaagaaagaattgcagtcatta 13657  T
Q  311 ttaggaaaaatcaactttctcaggaggtttatatcaaatctaagtggcaagacacaagctttctcgccattactccgactaaagaaagaggatgttttca 410  Q
     | |||||||||||||||||  ||||||||||||||||| | ||||| ||||||||||||||||| ||||||||||||| ||||||||| ||||||||||    
T  13658 ctgggaaaaatcaactttctacggaggtttatatcaaatttgagtggaaagacacaagctttctcaccattactccgaccaaagaaagatgatgttttca 13757  T
Q  411 aatgggagccggaacaccaaa 431  Q
    ||||||| || || |||||||    
T  13758 aatgggaaccagagcaccaaa 13778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0304 (Bit Score: 269; Significance: 1e-150; HSPs: 1)
Name: scaffold0304
Description:

Target: scaffold0304; HSP #1
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 11 - 431
Target Start/End: Complemental strand, 21325 - 20905
Alignment:
Q  11 cagagagcgatgaatttaatgtttcatgatttcatagagaattttatgcaaatttacattgatgatattgtggtaaaatcttcttcggaggaaagacatt 110  Q
    ||||||||||||||||||||||| |||||||||||||| |||||||||||  |||| || ||||| ||||| || |||||||||||||| ||||||||||    
T  21325 cagagagcgatgaatttaatgttccatgatttcatagaaaattttatgcaggtttatatcgatgacattgtagtgaaatcttcttcggaagaaagacatt 21226  T
Q  111 tgaaacatttacgccgatcgtttgaaaggatgaggcgatatggattgaaaatgaatccattaaaatgtgcatttggggtttgtgcatgtgattttctagg 210  Q
    || |||||||||||| ||| || ||||  ||||||| ||||||||||||||||||||| |||||||||||||||| |||||||||| |||||||  ||||    
T  21225 tggaacatttacgccaatcattcgaaattatgaggcaatatggattgaaaatgaatcctttaaaatgtgcatttgaggtttgtgcaggtgatttcttagg 21126  T
Q  211 tttcgtggtgcataaaaagggaatcgaaatcaaccagaacaaaaccaaggcaataatcgagaccaaagctccttctacgaagaaagagttgcagtcacta 310  Q
    |||||| |||||||||||||| ||||||||||||||||||||||| || ||||||||||| ||||||||||||||||| ||||||||||||||||| |||    
T  21125 tttcgtcgtgcataaaaaggggatcgaaatcaaccagaacaaaactaaagcaataatcgaaaccaaagctccttctacaaagaaagagttgcagtctcta 21026  T
Q  311 ttaggaaaaatcaactttctcaggaggtttatatcaaatctaagtggcaagacacaagctttctcgccattactccgactaaagaaagaggatgttttca 410  Q
     ||||||| |||||||||||| |||||||||||||||| |||||||||||||||||||||||||| ||| ||||||||||||||||||| ||||||||||    
T  21025 ctaggaaagatcaactttctccggaggtttatatcaaacctaagtggcaagacacaagctttctcaccactactccgactaaagaaagatgatgttttca 20926  T
Q  411 aatgggagccggaacaccaaa 431  Q
    |||||||||| || |||||||    
T  20925 aatgggagccagagcaccaaa 20905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 269; Significance: 1e-150; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 11 - 431
Target Start/End: Complemental strand, 15152196 - 15151776
Alignment:
Q  11 cagagagcgatgaatttaatgtttcatgatttcatagagaattttatgcaaatttacattgatgatattgtggtaaaatcttcttcggaggaaagacatt 110  Q
    ||||||||||||||||||||||| |||||||| ||||| |||||||||||  |||| || ||||||||||| |||||||||||||| || ||||||||||    
T  15152196 cagagagcgatgaatttaatgttccatgattttatagaaaattttatgcaggtttatatcgatgatattgtagtaaaatcttcttcagaagaaagacatt 15152097  T
Q  111 tgaaacatttacgccgatcgtttgaaaggatgaggcgatatggattgaaaatgaatccattaaaatgtgcatttggggtttgtgcatgtgattttctagg 210  Q
    || ||||||||||||  || || ||||||||||||| ||||||| ||||||||||||| ||||||||||||||||||||||||||| |||||||  ||||    
T  15152096 tggaacatttacgccagtcattcgaaaggatgaggcaatatggactgaaaatgaatcctttaaaatgtgcatttggggtttgtgcaggtgatttcttagg 15151997  T
Q  211 tttcgtggtgcataaaaagggaatcgaaatcaaccagaacaaaaccaaggcaataatcgagaccaaagctccttctacgaagaaagagttgcagtcacta 310  Q
    |||||| |||||||||||||||||||| || ||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||    
T  15151996 tttcgtcgtgcataaaaagggaatcgagattaaccaaaacaaaaccaaggcaataatcgagaccaaagctccttccacgaagaaagagttgcagtctcta 15151897  T
Q  311 ttaggaaaaatcaactttctcaggaggtttatatcaaatctaagtggcaagacacaagctttctcgccattactccgactaaagaaagaggatgttttca 410  Q
     |||||||  ||||||||||| |||||||||||||||| |||||||||||||||||||||||||| ||| ||||||||||||||||||| ||||||||||    
T  15151896 ctaggaaaggtcaactttctccggaggtttatatcaaacctaagtggcaagacacaagctttctcaccactactccgactaaagaaagatgatgttttca 15151797  T
Q  411 aatgggagccggaacaccaaa 431  Q
    ||||||| || || |||||||    
T  15151796 aatgggaaccagagcaccaaa 15151776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 117 - 431
Target Start/End: Complemental strand, 14745161 - 14744847
Alignment:
Q  117 atttacgccgatcgtttgaaaggatgaggcgatatggattgaaaatgaatccattaaaatgtgcatttggggtttgtgcatgtgattttctaggtttcgt 216  Q
    ||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||    
T  14745161 atttacgccgatcatttgaatggatgaggcgatatggattgaaaatgaatccattaaaatgtgcatttgaggtttgtgcaggtgattttctaggtttcgt 14745062  T
Q  217 ggtgcataaaaagggaatcgaaatcaaccagaacaaaaccaaggcaataatcgagaccaaagctccttctacgaagaaagagttgcagtcactattagga 316  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||| |||    
T  14745061 ggtgcataaaaagggaatcgaaatcaaccagaacaaaaccaaggcaataatcgagaccaaagctccttctacaaagaaagagttgcagtcattattggga 14744962  T
Q  317 aaaatcaactttctcaggaggtttatatcaaatctaagtggcaagacacaagctttctcgccattactccgactaaagaaagaggatgttttcaaatggg 416  Q
    |||||||||||||||  |||||||||||||||| ||||||| ||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||    
T  14744961 aaaatcaactttctctagaggtttatatcaaatttaagtggtaagacacaagctttctcaccattactccgactaaagaaagatgatgttttcaaatggg 14744862  T
Q  417 agccggaacaccaaa 431  Q
    |||| || |||||||    
T  14744861 agccagagcaccaaa 14744847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 11 - 431
Target Start/End: Complemental strand, 13287657 - 13287246
Alignment:
Q  11 cagagagcgatgaatttaatgtttcatgatttcatagagaattttatgcaaatttacattgatgatattgtggtaaaatcttcttcggaggaaagacatt 110  Q
    ||||||||||||||||||||||| |||||||||||||| |||||||||||  |||| || ||||| ||||| || |||||||||||||| || |||||||    
T  13287657 cagagagcgatgaatttaatgttccatgatttcatagaaaattttatgcaggtttatatcgatgacattgtagtgaaatcttcttcggaagagagacatt 13287558  T
Q  111 tgaaacatttacgccgatcgtttgaaaggatgaggcgatatggattgaaaatgaatccattaaaatgtgcatttggggtttgtgcatgtgattttctagg 210  Q
    |         ||||||||| || ||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||  ||||    
T  13287557 t---------acgccgatcattcgaaaggatgaggcaatatggattgaaaatgaatcctttaaaatgtgcatttggggtttgtgcaggtgatttcttagg 13287467  T
Q  211 tttcgtggtgcataaaaagggaatcgaaatcaaccagaacaaaaccaaggcaataatcgagaccaaagctccttctacgaagaaagagttgcagtcacta 310  Q
     ||||| |||||||||||||| ||||| |||||||||||||||||||||||||||||||||| |||  |||||||||| ||||||||||||||||| |||    
T  13287466 gttcgtcgtgcataaaaaggggatcgagatcaaccagaacaaaaccaaggcaataatcgagatcaagactccttctacaaagaaagagttgcagtctcta 13287367  T
Q  311 ttaggaaaaatcaactttctcaggaggtttatatcaaatctaagtggcaagacacaagctttctcgccattactccgactaaagaaagaggatgttttca 410  Q
     ||||||| |||||||||||| |||||||||||||||| ||||||||||||| |||||||||||| ||| ||||||||||||||||||| ||||||||||    
T  13287366 ctaggaaagatcaactttctccggaggtttatatcaaacctaagtggcaagaaacaagctttctcaccactactccgactaaagaaagatgatgttttca 13287267  T
Q  411 aatgggagccggaacaccaaa 431  Q
    ||||||| || || |||||||    
T  13287266 aatgggaaccagagcaccaaa 13287246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 14 - 431
Target Start/End: Complemental strand, 18560848 - 18560432
Alignment:
Q  14 agagcgatgaatttaatgtttcatgatttcatagagaattttatgcaaatttacattgatgatattgtggtaaaatcttcttcggaggaaagacatttga 113  Q
    |||||||||||||  || |||||||| ||||||||| |||| |||||| ||||||| |||||||| || ||| || | ||||| || || | ||| ||      
T  18560848 agagcgatgaattcgatatttcatgacttcatagaggatttcatgcaagtttacatcgatgatatcgtagtataaccatcttcagaagataaacacttag 18560749  T
Q  114 aacatttacgccgatcgtttgaaaggatgaggcgatatggattgaaaatgaatccattaaaatgtgcatttggggtttgtgcatgtgattttctaggttt 213  Q
    | || ||||||||||| || ||||||||||||| ||||||||| ||||| ||||||||||||||||||||||| ||||||||| |||||||| |||||||    
T  18560748 atcacttacgccgatcattcgaaaggatgaggcaatatggattaaaaattaatccattaaaatgtgcatttggtgtttgtgcaggtgattttttaggttt 18560649  T
Q  214 cgtggtgcataaaaagggaatcgaaatcaaccagaacaaaaccaaggcaataatcgagaccaaagctccttctacgaagaaagagttgcagtcactatta 313  Q
     || || || ||||| |||||| | || ||  | ||||||||||| |||||||| |||||  |||| ||||| || |||||||||||||||||  |  ||    
T  18560648 tgttgtccacaaaaaaggaatcaagattaataaaaacaaaaccaaagcaataatggagactcaagccccttcgacaaagaaagagttgcagtctttgcta 18560549  T
Q  314 ggaaaaatcaactttctcaggaggtttatatcaaatctaagtggcaagacacaagctttctcgccattactccgactaaagaaagaggatgttttcaaat 413  Q
    |||||||||||||||||||  ||||| ||||| || ||||| ||||| ||| || |||||||||||||||| || |||||| |||| ||||| |||||||    
T  18560548 ggaaaaatcaactttctcaaaaggttcatatcgaacctaagcggcaaaacaaaaactttctcgccattacttcgtctaaag-aagaagatgtgttcaaat 18560450  T
Q  414 gggagccggaacaccaaa 431  Q
    |||| || ||||||||||    
T  18560449 gggaaccagaacaccaaa 18560432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 11 - 121
Target Start/End: Complemental strand, 14748214 - 14748104
Alignment:
Q  11 cagagagcgatgaatttaatgtttcatgatttcatagagaattttatgcaaatttacattgatgatattgtggtaaaatcttcttcggaggaaagacatt 110  Q
    ||||||||||||||||||||||| ||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  14748214 cagagagcgatgaatttaatgttccatgatttcatagaggattttatgcaagtttacattgatgatattgtggtaaaatcttcttcggaggaaagacatt 14748115  T
Q  111 tgaaacattta 121  Q
    || ||||||||    
T  14748114 tggaacattta 14748104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 269; Significance: 1e-150; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 11 - 431
Target Start/End: Original strand, 10154887 - 10155307
Alignment:
Q  11 cagagagcgatgaatttaatgtttcatgatttcatagagaattttatgcaaatttacattgatgatattgtggtaaaatcttcttcggaggaaagacatt 110  Q
    ||||||||||||||||||||||| |||||||||||||| |||||||||||  ||||||| ||||| ||||| || |||||||||||||| ||||||||||    
T  10154887 cagagagcgatgaatttaatgttccatgatttcatagaaaattttatgcaggtttacatcgatgacattgtagtgaaatcttcttcggaagaaagacatt 10154986  T
Q  111 tgaaacatttacgccgatcgtttgaaaggatgaggcgatatggattgaaaatgaatccattaaaatgtgcatttggggtttgtgcatgtgattttctagg 210  Q
    || |||||||||||| ||| || ||||| ||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||  ||||    
T  10154987 tggaacatttacgccaatcattcgaaagaatgaggcaatatggattgaaaatgaatcctttaaaatgtgcatttggggtttgtgcaggtgatttcttagg 10155086  T
Q  211 tttcgtggtgcataaaaagggaatcgaaatcaaccagaacaaaaccaaggcaataatcgagaccaaagctccttctacgaagaaagagttgcagtcacta 310  Q
     |||||  |||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||| ||||||||||| ||||||||||||||||| |||    
T  10155087 gttcgtcttgcataaaaagggaatcgaaatcaaccagaacaaaaccaaagcattaatcgagaccaaggctccttctaccaagaaagagttgcagtctcta 10155186  T
Q  311 ttaggaaaaatcaactttctcaggaggtttatatcaaatctaagtggcaagacacaagctttctcgccattactccgactaaagaaagaggatgttttca 410  Q
     |||| || |||||||||||| |||||||||||||||| |||||||| ||||||||||||||||| ||||||||||||||||||||||| ||||||||||    
T  10155187 ctagggaagatcaactttctccggaggtttatatcaaacctaagtggtaagacacaagctttctcaccattactccgactaaagaaagatgatgttttca 10155286  T
Q  411 aatgggagccggaacaccaaa 431  Q
    ||||||| || || |||||||    
T  10155287 aatgggaaccagagcaccaaa 10155307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 11 - 417
Target Start/End: Complemental strand, 13305202 - 13304796
Alignment:
Q  11 cagagagcgatgaatttaatgtttcatgatttcatagagaattttatgcaaatttacattgatgatattgtggtaaaatcttcttcggaggaaagacatt 110  Q
    |||| |||||||||||||||||| ||||| ||||||||||||||||||||  ||||||| ||||| ||||| || |||||||||||||| || ||||| |    
T  13305202 cagaaagcgatgaatttaatgttccatgacttcatagagaattttatgcaggtttacatagatgacattgtagtgaaatcttcttcggaagagagacact 13305103  T
Q  111 tgaaacatttacgccgatcgtttgaaaggatgaggcgatatggattgaaaatgaatccattaaaatgtgcatttggggtttgtgcatgtgattttctagg 210  Q
    || |||||||||||||||| || ||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||  ||||    
T  13305102 tggaacatttacgccgatcattcgaaaggatgaggcaatatggattgaaaatgaatcctttaaaatgtgcatttggggtttgtgcaggtgatttcttagg 13305003  T
Q  211 tttcgtggtgcataaaaagggaatcgaaatcaaccagaacaaaaccaaggcaataatcgagaccaaagctccttctacgaagaaagagttgcagtcacta 310  Q
     ||||| ||||| ||||| |||||||| ||||||||||||||||||||||||||||| |||||||| ||||||||||| |||||||| || ||||| |||    
T  13305002 gttcgttgtgcacaaaaaaggaatcgagatcaaccagaacaaaaccaaggcaataattgagaccaaggctccttctacaaagaaagaattacagtctcta 13304903  T
Q  311 ttaggaaaaatcaactttctcaggaggtttatatcaaatctaagtggcaagacacaagctttctcgccattactccgactaaagaaagaggatgttttca 410  Q
    ||||||||||||||||||||| | |||||||||||||| |||||||||||||||||||||||||| ||| |||||||| |||||||||| ||||| ||||    
T  13304902 ttaggaaaaatcaactttctccgaaggtttatatcaaacctaagtggcaagacacaagctttctcaccactactccgattaaagaaagatgatgtcttca 13304803  T
Q  411 aatggga 417  Q
    |||||||    
T  13304802 aatggga 13304796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 11 - 431
Target Start/End: Original strand, 10784061 - 10784481
Alignment:
Q  11 cagagagcgatgaatttaatgtttcatgatttcatagagaattttatgcaaatttacattgatgatattgtggtaaaatcttcttcggaggaaagacatt 110  Q
    ||||| ||||||||||||||||| ||||||||||||||||||||||||||| | ||||| ||||| ||||| || |||||||||||||| |||||||| |    
T  10784061 cagagggcgatgaatttaatgttccatgatttcatagagaattttatgcaagtctacatagatgacattgtagtgaaatcttcttcggaagaaagacact 10784160  T
Q  111 tgaaacatttacgccgatcgtttgaaaggatgaggcgatatggattgaaaatgaatccattaaaatgtgcatttggggtttgtgcatgtgattttctagg 210  Q
    || |||||||||||| ||| || ||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||| |||||||| ||||    
T  10784161 tggaacatttacgccaatcattcgaaaggatgaggcaatatggattgaaaatgaatccattaaaatgcgcatttggggtttgtgcaggtgattttttagg 10784260  T
Q  211 tttcgtggtgcataaaaagggaatcgaaatcaaccagaacaaaaccaaggcaataatcgagaccaaagctccttctacgaagaaagagttgcagtcacta 310  Q
     ||||| ||||| ||||| |||||||| |||||||||||||||||||| |||||||||||||| |||||||| |||||||||||||| || ||||| |||    
T  10784261 gttcgttgtgcacaaaaaaggaatcgagatcaaccagaacaaaaccaaagcaataatcgagactaaagctccctctacgaagaaagaattacagtctcta 10784360  T
Q  311 ttaggaaaaatcaactttctcaggaggtttatatcaaatctaagtggcaagacacaagctttctcgccattactccgactaaagaaagaggatgttttca 410  Q
    || |||||||||||||||||| | || |||||||||||||||||||||| ||||||||||||||| ||| |||| ||| | |||||||| ||||||||||    
T  10784361 ttgggaaaaatcaactttctccgaagatttatatcaaatctaagtggcaggacacaagctttctcaccactacttcgattgaagaaagatgatgttttca 10784460  T
Q  411 aatgggagccggaacaccaaa 431  Q
    ||||||| || || |||||||    
T  10784461 aatgggaacctgagcaccaaa 10784481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 11 - 431
Target Start/End: Complemental strand, 14691732 - 14691312
Alignment:
Q  11 cagagagcgatgaatttaatgtttcatgatttcatagagaattttatgcaaatttacattgatgatattgtggtaaaatcttcttcggaggaaagacatt 110  Q
    |||||| |||||||||||||||| ||||| |||||||| |||||||||||  |||| || ||||| ||||| || |||||||||||||| || ||||| |    
T  14691732 cagagaacgatgaatttaatgttccatgacttcatagaaaattttatgcaggtttatatagatgacattgtagtgaaatcttcttcggaagagagacact 14691633  T
Q  111 tgaaacatttacgccgatcgtttgaaaggatgaggcgatatggattgaaaatgaatccattaaaatgtgcatttggggtttgtgcatgtgattttctagg 210  Q
    || |||||||||| | |||  | ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||  ||||    
T  14691632 tggaacatttacgacaatcaatcgaaaggatgaggcaatatggattgaaaatgaatccattaaaatgtgcatttggggtttgtgcaggtgatttcttagg 14691533  T
Q  211 tttcgtggtgcataaaaagggaatcgaaatcaaccagaacaaaaccaaggcaataatcgagaccaaagctccttctacgaagaaagagttgcagtcacta 310  Q
    |||||| ||||| ||||| |||||||| |||||||||||||||||||| |||||||| |||||||| ||||||||||| |||||||| || ||||| |||    
T  14691532 tttcgttgtgcacaaaaaaggaatcgagatcaaccagaacaaaaccaaagcaataattgagaccaaggctccttctacaaagaaagaattacagtctcta 14691433  T
Q  311 ttaggaaaaatcaactttctcaggaggtttatatcaaatctaagtggcaagacacaagctttctcgccattactccgactaaagaaagaggatgttttca 410  Q
    ||||||||||||||||||||| | || |||||||||||||||||||||||||||||||||||||| ||| | || ||  | |||||||| ||| ||||||    
T  14691432 ttaggaaaaatcaactttctccgaagatttatatcaaatctaagtggcaagacacaagctttctcaccactgcttcggttgaagaaagatgatattttca 14691333  T
Q  411 aatgggagccggaacaccaaa 431  Q
    ||||||| || || |||||||    
T  14691332 aatgggaacctgagcaccaaa 14691312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 213; E-Value: 1e-116
Query Start/End: Original strand, 11 - 431
Target Start/End: Complemental strand, 7363734 - 7363315
Alignment:
Q  11 cagagagcgatgaatttaatgtttcatgatttcatagagaattttatgcaaatttacattgatgatattgtggtaaaatcttcttcggaggaaagacatt 110  Q
    ||||| ||||||||||| ||||| ||||| ||||||||||||||||||||  |||| || ||||| ||||| || || ||||||||||| |||||||| |    
T  7363734 cagagggcgatgaatttgatgttacatgacttcatagagaattttatgcaggtttatatagatgacattgtagtgaagtcttcttcggaagaaagacact 7363635  T
Q  111 tgaaacatttacgccgatcgtttgaaaggatgaggcgatatggattgaaaatgaatccattaaaatgtgcatttggggtttgtgcatgtgattttctagg 210  Q
    || |||||||||||| ||| || ||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||  ||||    
T  7363634 tggaacatttacgccaatcattcgaaag-atgaggcaatatggattgaaaatgaatccattaaaatgtgcatttggggtttgtgcaggtgatttcttagg 7363536  T
Q  211 tttcgtggtgcataaaaagggaatcgaaatcaaccagaacaaaaccaaggcaataatcgagaccaaagctccttctacgaagaaagagttgcagtcacta 310  Q
    |||||| ||||| ||||| |||||||| |||||||||||||||||||| |||||||| |||||||| ||||||||||| |||||||| || ||||| |||    
T  7363535 tttcgttgtgcacaaaaaaggaatcgagatcaaccagaacaaaaccaaagcaataattgagaccaaggctccttctacaaagaaagaattacagtctcta 7363436  T
Q  311 ttaggaaaaatcaactttctcaggaggtttatatcaaatctaagtggcaagacacaagctttctcgccattactccgactaaagaaagaggatgttttca 410  Q
    ||||| ||||||||||||||| | || ||||||||||||||||||||||||||||| |||||||| ||| | || ||  | |||||||| ||| ||||||    
T  7363435 ttagggaaaatcaactttctccgaagatttatatcaaatctaagtggcaagacacaggctttctcaccactgcttcggttgaagaaagatgatattttca 7363336  T
Q  411 aatgggagccggaacaccaaa 431  Q
    ||||||| || || |||||||    
T  7363335 aatgggaacctgagcaccaaa 7363315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 14 - 228
Target Start/End: Complemental strand, 268686 - 268472
Alignment:
Q  14 agagcgatgaatttaatgtttcatgatttcatagagaattttatgcaaatttacattgatgatattgtggtaaaatcttcttcggaggaaagacatttga 113  Q
    ||||| ||||||| |||||| |||| |||||| |  || ||||||||| | ||| |||||| |||||||||||||| ||| ||||| ||    ||||||     
T  268686 agagcaatgaattcaatgttccatgttttcattggtaaatttatgcaagtctacgttgatgttattgtggtaaaattttcatcggaagatgaccatttgg 268587  T
Q  114 aacatttacgccgatcgtttgaaaggatgaggcgatatggattgaaaatgaatccattaaaatgtgcatttggggtttgtgcatgtgattttctaggttt 213  Q
    ||||  | |    ||| || ||||| |||||   ||||||||||||||||||||||||||||||||||||||| || |||||| |||| ||  |||||||    
T  268586 aacaccttcaattatcattcgaaagaatgagaaaatatggattgaaaatgaatccattaaaatgtgcatttggcgtatgtgcaagtgacttcttaggttt 268487  T
Q  214 cgtggtgcataaaaa 228  Q
     || ||||| |||||    
T  268486 tgttgtgcacaaaaa 268472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 148 - 213
Target Start/End: Original strand, 14140603 - 14140668
Alignment:
Q  148 atatggattgaaaatgaatccattaaaatgtgcatttggggtttgtgcatgtgattttctaggttt 213  Q
    ||||||||||||||||||||||||||||||||| ||||| ||| ||||| |||||||| |||||||    
T  14140603 atatggattgaaaatgaatccattaaaatgtgcctttggtgttcgtgcaggtgattttttaggttt 14140668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0001 (Bit Score: 267; Significance: 1e-149; HSPs: 2)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 11 - 431
Target Start/End: Original strand, 92964 - 93373
Alignment:
Q  11 cagagagcgatgaatttaatgtttcatgatttcatagagaattttatgcaaatttacattgatgatattgtggtaaaatcttcttcggaggaaagacatt 110  Q
    |||||||||||||||||||||||||||||||||||| |  |||||||||||||||| ||||||||||||||||||||||||||||  ||||||| |||||    
T  92964 cagagagcgatgaatttaatgtttcatgatttcatataagattttatgcaaatttatattgatgatattgtggtaaaatcttctttagaggaaaaacatt 93063  T
Q  111 tgaaacatttacgccgatcgtttgaaaggatgaggcgatatggattgaaaatgaatccattaaaatgtgcatttggggtttgtgcatgtgattttctagg 210  Q
    || |||||||||||||||| ||||||||||||| || |||||||||||||||||||||||||||||||||||| |||||||||||| |||||||| ||||    
T  93064 tggaacatttacgccgatcttttgaaaggatgaagcaatatggattgaaaatgaatccattaaaatgtgcattcggggtttgtgcaggtgattttttagg 93163  T
Q  211 tttcgtggtgcataaaaagggaatcgaaatcaaccagaacaaaaccaaggcaataatcgagaccaaagctccttctacgaagaaagagttgcagtcacta 310  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||  |||||||||||||||||||||||||||| ||| |     
T  93164 tttcgtggtgcataaaaagggaatcgaaatcaaacagaacaaaaccaaggcaataattgagactcaagctccttctacgaagaaagagttgcaatcattg 93263  T
Q  311 ttaggaaaaatcaactttctcaggaggtttatatcaaatctaagtggcaagacacaagctttctcgccattactccgactaaagaaagaggatgttttca 410  Q
    |||||||||||||||||||           |||||||||||||||||||| |||||||||||||||||| |||||||| |||||||||| ||| |||| |    
T  93264 ttaggaaaaatcaactttc-----------atatcaaatctaagtggcaaaacacaagctttctcgccactactccgattaaagaaagaagatattttta 93352  T
Q  411 aatgggagccggaacaccaaa 431  Q
    |||||||| |||| |||||||    
T  93353 aatgggagacggagcaccaaa 93373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0001; HSP #2
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 11 - 431
Target Start/End: Complemental strand, 125064 - 124653
Alignment:
Q  11 cagagagcgatgaatttaatgtttcatgatttcatagagaattttatgcaaatttacattgatgatattgtggtaaaatcttcttcggaggaaagacatt 110  Q
    ||||||||||||||||||||||| ||||| ||||||||  |||||||| || ||||||||||         |||||||||||||||||| ||||||||||    
T  125064 cagagagcgatgaatttaatgttccatgacttcatagaagattttatgaaagtttacattga---------ggtaaaatcttcttcggaagaaagacatt 124974  T
Q  111 tgaaacatttacgccgatcgtttgaaaggatgaggcgatatggattgaaaatgaatccattaaaatgtgcatttggggtttgtgcatgtgattttctagg 210  Q
    || |||||| ||| | ||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||  |||||||  ||||    
T  124973 tggaacattcacgtcaatcatttgaaaggatgaggcgatatggattgaaaatgaatcctttaaaatgtgcatttggagtttgtgccggtgatttcttagg 124874  T
Q  211 tttcgtggtgcataaaaagggaatcgaaatcaaccagaacaaaaccaaggcaataatcgagaccaaagctccttctacgaagaaagagttgcagtcacta 310  Q
    |||||| ||||| ||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||| ||    
T  124873 tttcgtagtgcacaaaaaaggaatcgaaatcaaccagaacaaaaccaaggcaataattgagaccaaagctccttctatgaagaaagagttgcagtcatta 124774  T
Q  311 ttaggaaaaatcaactttctcaggaggtttatatcaaatctaagtggcaagacacaagctttctcgccattactccgactaaagaaagaggatgttttca 410  Q
     | |||||||||||||||||| ||||||| ||||||||||| ||||| ||||||||||||||||| |||||||| ||||| |||||||| ||| ||||||    
T  124773 ctgggaaaaatcaactttctccggaggttcatatcaaatctgagtgggaagacacaagctttctcaccattacttcgactgaagaaagacgatattttca 124674  T
Q  411 aatgggagccggaacaccaaa 431  Q
    ||||||| || || |||||||    
T  124673 aatgggaacctgagcaccaaa 124653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0053 (Bit Score: 266; Significance: 1e-148; HSPs: 1)
Name: scaffold0053
Description:

Target: scaffold0053; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 14 - 431
Target Start/End: Complemental strand, 40554 - 40137
Alignment:
Q  14 agagcgatgaatttaatgtttcatgatttcatagagaattttatgcaaatttacattgatgatattgtggtaaaatcttcttcggaggaaagacatttga 113  Q
    |||| ||||||| ||||||||||||||||||||||  |||||||||||||||| ||||||||||||||||||||||| ||||| ||||| | | ||||      
T  40554 agagtgatgaatctaatgtttcatgatttcatagaagattttatgcaaatttatattgatgatattgtggtaaaatcctcttcagaggagaaaaatttag 40455  T
Q  114 aacatttacgccgatcgtttgaaaggatgaggcgatatggattgaaaatgaatccattaaaatgtgcatttggggtttgtgcatgtgattttctaggttt 213  Q
    | |||||||||||||| |||||||||||||||| |||||||||||| |||||||||||||||||||||||||| |||||||||| ||||||| |||||||    
T  40454 agcatttacgccgatcttttgaaaggatgaggcaatatggattgaagatgaatccattaaaatgtgcatttggtgtttgtgcatatgattttttaggttt 40355  T
Q  214 cgtggtgcataaaaagggaatcgaaatcaaccagaacaaaaccaaggcaataatcgagaccaaagctccttctacgaagaaagagttgcagtcactatta 313  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||  ||||||||||||| |||||||||||||||||  || ||    
T  40354 cgtggtccataaaaagggaatcgaaatcaaccagaacaaaaccaaggcaataattgagactcaagctccttctacaaagaaagagttgcagtcgttacta 40255  T
Q  314 ggaaaaatcaactttctcaggaggtttatatcaaatctaagtggcaagacacaagctttctcgccattactccgactaaagaaagaggatgttttcaaat 413  Q
    ||||||||||||||||| ||||| || ||||| |||||||||||||||||||||||||||||||||||| ||||  | |||||||| |||||||| ||||    
T  40254 ggaaaaatcaactttcttaggagattcatatcgaatctaagtggcaagacacaagctttctcgccattagtccgcttgaagaaagaagatgtttttaaat 40155  T
Q  414 gggagccggaacaccaaa 431  Q
    ||||||| ||||||||||    
T  40154 gggagccagaacaccaaa 40137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0040 (Bit Score: 261; Significance: 1e-145; HSPs: 1)
Name: scaffold0040
Description:

Target: scaffold0040; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 11 - 431
Target Start/End: Original strand, 32870 - 33290
Alignment:
Q  11 cagagagcgatgaatttaatgtttcatgatttcatagagaattttatgcaaatttacattgatgatattgtggtaaaatcttcttcggaggaaagacatt 110  Q
    |||||||||||||| || ||||| |||||||| ||||| |||||||||||  |||| |||||||||||||| || ||||||||||| || || |||||||    
T  32870 cagagagcgatgaacttgatgttccatgattttatagaaaattttatgcaggtttatattgatgatattgtagtgaaatcttcttcagaagagagacatt 32969  T
Q  111 tgaaacatttacgccgatcgtttgaaaggatgaggcgatatggattgaaaatgaatccattaaaatgtgcatttggggtttgtgcatgtgattttctagg 210  Q
    || || || |||||| ||| || ||||||||||||  ||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||  ||||    
T  32970 tggaatatctacgccaatcattcgaaaggatgaggaaatatggattgaaaatgaatcctttaaaatgtgcatttggggtttgtgcaggtgatttcttagg 33069  T
Q  211 tttcgtggtgcataaaaagggaatcgaaatcaaccagaacaaaaccaaggcaataatcgagaccaaagctccttctacgaagaaagagttgcagtcacta 310  Q
    |||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||    
T  33070 tttcgtcgtgcataaaaaaggaatcgaaatcaaccagaacaaaaccaaggcaataatcgagaccaaagctccttctacaaagaaagagttgcagtctcta 33169  T
Q  311 ttaggaaaaatcaactttctcaggaggtttatatcaaatctaagtggcaagacacaagctttctcgccattactccgactaaagaaagaggatgttttca 410  Q
     |||| || |||||||||||| |||||||||||||||| ||||||||||| |||||||||||||| ||| ||||||||||||||||||| ||||||||||    
T  33170 ctaggcaagatcaactttctccggaggtttatatcaaacctaagtggcaaaacacaagctttctcaccactactccgactaaagaaagatgatgttttca 33269  T
Q  411 aatgggagccggaacaccaaa 431  Q
    ||||||| || ||||||||||    
T  33270 aatgggaaccagaacaccaaa 33290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0022 (Bit Score: 249; Significance: 1e-138; HSPs: 1)
Name: scaffold0022
Description:

Target: scaffold0022; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 11 - 431
Target Start/End: Original strand, 12919 - 13339
Alignment:
Q  11 cagagagcgatgaatttaatgtttcatgatttcatagagaattttatgcaaatttacattgatgatattgtggtaaaatcttcttcggaggaaagacatt 110  Q
    ||||| |||||||||| |||||| ||||| |||||||| |||||||||||  ||||||||||||| ||||| || ||||||||||| || || |||||||    
T  12919 cagagggcgatgaattcaatgttccatgacttcatagaaaattttatgcaggtttacattgatgacattgtagtgaaatcttcttcagaagagagacatt 13018  T
Q  111 tgaaacatttacgccgatcgtttgaaaggatgaggcgatatggattgaaaatgaatccattaaaatgtgcatttggggtttgtgcatgtgattttctagg 210  Q
    || |||||||||||||||| || ||||| ||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||| | |||||  ||||    
T  13019 tggaacatttacgccgatcattcgaaagaatgaggctatatggattgaaaatgaatcctttaaaatgtgcatttggggtttgtgcaggagatttcttagg 13118  T
Q  211 tttcgtggtgcataaaaagggaatcgaaatcaaccagaacaaaaccaaggcaataatcgagaccaaagctccttctacgaagaaagagttgcagtcacta 310  Q
     ||||| |||||||||||||| ||||| ||||||||||||||||||||||||||||| |||||||| ||||||||||| ||||||||||||||||| |||    
T  13119 gttcgtcgtgcataaaaaggggatcgagatcaaccagaacaaaaccaaggcaataattgagaccaaggctccttctacaaagaaagagttgcagtcccta 13218  T
Q  311 ttaggaaaaatcaactttctcaggaggtttatatcaaatctaagtggcaagacacaagctttctcgccattactccgactaaagaaagaggatgttttca 410  Q
     ||||||| |||||||||||| ||||||| ||||||||  ||||||||||||||||||||||||| ||| ||||||||||||||||||| ||||||||||    
T  13219 ctaggaaagatcaactttctccggaggttcatatcaaacttaagtggcaagacacaagctttctcaccactactccgactaaagaaagatgatgttttca 13318  T
Q  411 aatgggagccggaacaccaaa 431  Q
    ||||||| || || |||||||    
T  13319 aatgggaaccagagcaccaaa 13339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 243; Significance: 1e-134; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 243; E-Value: 1e-134
Query Start/End: Original strand, 11 - 417
Target Start/End: Complemental strand, 18169922 - 18169516
Alignment:
Q  11 cagagagcgatgaatttaatgtttcatgatttcatagagaattttatgcaaatttacattgatgatattgtggtaaaatcttcttcggaggaaagacatt 110  Q
    |||||||| |||||||||||||| ||||| ||||||||||||||||||||  ||||||| ||||| ||||| || |||||||||||||| || ||||| |    
T  18169922 cagagagcaatgaatttaatgttccatgacttcatagagaattttatgcaggtttacatagatgacattgtagtgaaatcttcttcggaagagagacact 18169823  T
Q  111 tgaaacatttacgccgatcgtttgaaaggatgaggcgatatggattgaaaatgaatccattaaaatgtgcatttggggtttgtgcatgtgattttctagg 210  Q
    || |||||||||||||||| || ||||||||||||| ||||||||||||||||||||| ||||| ||||||||||||||||||||| |||||||  | ||    
T  18169822 tggaacatttacgccgatcattcgaaaggatgaggcaatatggattgaaaatgaatcctttaaagtgtgcatttggggtttgtgcaggtgatttcttggg 18169723  T
Q  211 tttcgtggtgcataaaaagggaatcgaaatcaaccagaacaaaaccaaggcaataatcgagaccaaagctccttctacgaagaaagagttgcagtcacta 310  Q
     ||||| |||||| ||||||||||||| ||||||||||||||||| || ||||||||||||||||||||||||||||| ||||||||||||||||| |||    
T  18169722 gttcgtcgtgcattaaaagggaatcgagatcaaccagaacaaaacaaaagcaataatcgagaccaaagctccttctacaaagaaagagttgcagtctcta 18169623  T
Q  311 ttaggaaaaatcaactttctcaggaggtttatatcaaatctaagtggcaagacacaagctttctcgccattactccgactaaagaaagaggatgttttca 410  Q
     ||||||| |||||||||||| | ||||| |||||||| ||||||||||||||||||| |||||| ||| |||| |||||||||||||| ||||||||||    
T  18169622 ctaggaaagatcaactttctccgaaggttcatatcaaacctaagtggcaagacacaagttttctcaccactacttcgactaaagaaagatgatgttttca 18169523  T
Q  411 aatggga 417  Q
    |||||||    
T  18169522 aatggga 18169516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 11 - 431
Target Start/End: Complemental strand, 14340946 - 14340526
Alignment:
Q  11 cagagagcgatgaatttaatgtttcatgatttcatagagaattttatgcaaatttacattgatgatattgtggtaaaatcttcttcggaggaaagacatt 110  Q
    ||||| ||||||||||||||||| ||||| ||||||||||||||||||||  ||||||| ||||| ||||| || |||||||||||||| || ||||| |    
T  14340946 cagagggcgatgaatttaatgttccatgacttcatagagaattttatgcaggtttacatagatgacattgtagtgaaatcttcttcggaagagagacact 14340847  T
Q  111 tgaaacatttacgccgatcgtttgaaaggatgaggcgatatggattgaaaatgaatccattaaaatgtgcatttggggtttgtgcatgtgattttctagg 210  Q
    || ||||||| || | ||| || ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| | |||||||  ||||    
T  14340846 tggaacatttgcgtcaatcattcgaaaggatgaggcaatatggattgaaaatgaatccattaaaatgtgcatttggggtttgtggaggtgatttcttagg 14340747  T
Q  211 tttcgtggtgcataaaaagggaatcgaaatcaaccagaacaaaaccaaggcaataatcgagaccaaagctccttctacgaagaaagagttgcagtcacta 310  Q
    |||||| ||||| ||||| |||||||| |||||||||||||||||||| |||||||| |||||||| ||||||||||| |||||||| || ||||| |||    
T  14340746 tttcgttgtgcacaaaaaaggaatcgagatcaaccagaacaaaaccaaagcaataattgagaccaaggctccttctacaaagaaagaattacagtctcta 14340647  T
Q  311 ttaggaaaaatcaactttctcaggaggtttatatcaaatctaagtggcaagacacaagctttctcgccattactccgactaaagaaagaggatgttttca 410  Q
    |||||||||||||||||||||   || |||||||||||||||||||||||||||||||||||||| ||||| || ||| | |||||||| ||| ||||||    
T  14340646 ttaggaaaaatcaactttctccaaagatttatatcaaatctaagtggcaagacacaagctttctcaccattgcttcgattgaagaaagatgatattttca 14340547  T
Q  411 aatgggagccggaacaccaaa 431  Q
    ||||||| || || |||||||    
T  14340546 aatgggaacctgagcaccaaa 14340526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 311 - 426
Target Start/End: Original strand, 18457991 - 18458106
Alignment:
Q  311 ttaggaaaaatcaactttctcaggaggtttatatcaaatctaagtggcaagacacaagctttctcgccattactccgactaaagaaagaggatgttttca 410  Q
    ||||||||||||||||||||||  || ||||| |||||||||||| |||| ||  |||||||||||||| |||| |||| ||||||||| ||||| ||||    
T  18457991 ttaggaaaaatcaactttctcataagatttatctcaaatctaagtagcaaaactgaagctttctcgccactacttcgaccaaagaaagaagatgtattca 18458090  T
Q  411 aatgggagccggaaca 426  Q
    | ||||| || |||||    
T  18458091 agtgggaaccagaaca 18458106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 20 - 180
Target Start/End: Complemental strand, 13276182 - 13276022
Alignment:
Q  20 atgaatttaatgtttcatgatttcatagagaattttatgcaaatttacattgatgatattgtggtaaaatcttcttcggaggaaagacatttgaaacatt 119  Q
    ||||||| ||||||| |||||||||| |  || ||||||||||| ||||||||||||||||||||||||||||| ||||| ||    |||||||||||      
T  13276182 atgaattcaatgtttaatgatttcattggcaaatttatgcaaatctacattgatgatattgtggtaaaatcttcgtcggaagacgatcatttgaaacacc 13276083  T
Q  120 tacgccgatcgtttgaaaggatgaggcgatatggattgaaaatgaatccattaaaatgtgc 180  Q
    | ||   ||| ||  | ||||||||    ||||||||||||||||||||||| ||||||||    
T  13276082 ttcgattatcattcaagaggatgagaaagtatggattgaaaatgaatccattgaaatgtgc 13276022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 28 - 86
Target Start/End: Complemental strand, 16033581 - 16033523
Alignment:
Q  28 aatgtttcatgatttcatagagaattttatgcaaatttacattgatgatattgtggtaa 86  Q
    ||||||||||||||| || || || ||||||||||||||||||||||||||| ||||||    
T  16033581 aatgtttcatgattttattgataaatttatgcaaatttacattgatgatattatggtaa 16033523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 151 - 205
Target Start/End: Original strand, 18457830 - 18457884
Alignment:
Q  151 tggattgaaaatgaatccattaaaatgtgcatttggggtttgtgcatgtgatttt 205  Q
    |||||||||||||||||||||||||||||  ||||| ||| ||||| ||||||||    
T  18457830 tggattgaaaatgaatccattaaaatgtgtctttggtgttcgtgcaggtgatttt 18457884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 20 - 93
Target Start/End: Original strand, 9015878 - 9015951
Alignment:
Q  20 atgaatttaatgtttcatgatttcatagagaattttatgcaaatttacattgatgatattgtggtaaaatcttc 93  Q
    ||||||| |||||||||||||||  | || || |||||||| ||||| | |||||||||||| ||||| |||||    
T  9015878 atgaattcaatgtttcatgattttgttgataaatttatgcagatttatagtgatgatattgttgtaaattcttc 9015951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0064 (Bit Score: 242; Significance: 1e-134; HSPs: 1)
Name: scaffold0064
Description:

Target: scaffold0064; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 11 - 431
Target Start/End: Complemental strand, 35947 - 35526
Alignment:
Q  11 cagagagcgatgaatttaatgtttcatgatttcatagagaattttatgcaaatttac-attgatgatattgtggtaaaatcttcttcggaggaaagacat 109  Q
    ||||||||||||||||||||||| |||||||||||||| || ||||||||  ||||  || ||||||||||| |||||||||||||| || |||||||||    
T  35947 cagagagcgatgaatttaatgttccatgatttcatagaaaactttatgcaggtttattatcgatgatattgtagtaaaatcttcttcagaagaaagacat 35848  T
Q  110 ttgaaacatttacgccgatcgtttgaaaggatgaggcgatatggattgaaaatgaatccattaaaatgtgcatttggggtttgtgcatgtgattttctag 209  Q
    ||| ||||||||||||  || || ||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||  |||    
T  35847 ttggaacatttacgccagtcattcgaaaggatgaggcaatatggattgaaaatgaatcctttaaaatgtgcatttggggtttgtgcaggtgatttcttag 35748  T
Q  210 gtttcgtggtgcataaaaagggaatcgaaatcaaccagaacaaaaccaaggcaataatcgagaccaaagctccttctacgaagaaagagttgcagtcact 309  Q
    ||||  | ||||||||||| |||||||| |  ||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||    
T  35747 gttttttcgtgcataaaaaaggaatcgagaataaccaaaacaaaaccaaggcaataatcgagaccaaagctccttccacgaagaaagagttgcagtctct 35648  T
Q  310 attaggaaaaatcaactttctcaggaggtttatatcaaatctaagtggcaagacacaagctttctcgccattactccgactaaagaaagaggatgttttc 409  Q
    | |||| ||||||||||||||| ||||||||||||| || |||||||||||||||||||||||||| ||| |||||||  |||||||||| |||||||||    
T  35647 actagggaaaatcaactttctccggaggtttatatcgaacctaagtggcaagacacaagctttctcaccactactccgtttaaagaaagatgatgttttc 35548  T
Q  410 aaatgggagccggaacaccaaa 431  Q
    |||||||| || || |||||||    
T  35547 aaatgggaaccagagcaccaaa 35526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0051 (Bit Score: 241; Significance: 1e-133; HSPs: 1)
Name: scaffold0051
Description:

Target: scaffold0051; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 11 - 431
Target Start/End: Original strand, 71330 - 71750
Alignment:
Q  11 cagagagcgatgaatttaatgtttcatgatttcatagagaattttatgcaaatttacattgatgatattgtggtaaaatcttcttcggaggaaagacatt 110  Q
    ||||||||||||||||||||||| || || ||||||||||||||||||||  ||||||| ||||||||||| || |||||||||||||| || ||||| |    
T  71330 cagagagcgatgaatttaatgttccaagacttcatagagaattttatgcaggtttacatagatgatattgtagtgaaatcttcttcggaagagagacact 71429  T
Q  111 tgaaacatttacgccgatcgtttgaaaggatgaggcgatatggattgaaaatgaatccattaaaatgtgcatttggggtttgtgcatgtgattttctagg 210  Q
    || |||||||||||||||| || ||||||||||||| ||||||||| ||||||||||| ||||||||||||||||||||||||||| |||||||  ||||    
T  71430 tggaacatttacgccgatcattcgaaaggatgaggcaatatggattaaaaatgaatcctttaaaatgtgcatttggggtttgtgcaggtgatttcttagg 71529  T
Q  211 tttcgtggtgcataaaaagggaatcgaaatcaaccagaacaaaaccaaggcaataatcgagaccaaagctccttctacgaagaaagagttgcagtcacta 310  Q
     ||||| ||||| ||||| |||||||| ||||||||||||||||||||||||||||| |||||||| ||||||||||| |||||||| || ||||| |||    
T  71530 gttcgttgtgcacaaaaaaggaatcgagatcaaccagaacaaaaccaaggcaataattgagaccaaggctccttctacaaagaaagaattacagtctcta 71629  T
Q  311 ttaggaaaaatcaactttctcaggaggtttatatcaaatctaagtggcaagacacaagctttctcgccattactccgactaaagaaagaggatgttttca 410  Q
    ||||||||||||||||||||| |  | ||||||||||| |||||| ||||||||||||||||||| ||| |||||||| ||| |||||| ||||||||||    
T  71630 ttaggaaaaatcaactttctccgacgctttatatcaaacctaagtagcaagacacaagctttctcaccactactccgattaatgaaagatgatgttttca 71729  T
Q  411 aatgggagccggaacaccaaa 431  Q
    ||||||| || || |||||||    
T  71730 aatgggaaccagagcaccaaa 71750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0046 (Bit Score: 224; Significance: 1e-123; HSPs: 2)
Name: scaffold0046
Description:

Target: scaffold0046; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 72 - 399
Target Start/End: Original strand, 55920 - 56247
Alignment:
Q  72 atgatattgtggtaaaatcttcttcggaggaaagacatttgaaacatttacgccgatcgtttgaaaggatgaggcgatatggattgaaaatgaatccatt 171  Q
    |||||||||||||||||||||||||  |||||| ||| |||  | ||||||||| ||| |||||||||||||| | ||||||||||||||||||||||||    
T  55920 atgatattgtggtaaaatcttcttcaaaggaaaaacacttgggatatttacgccaatcttttgaaaggatgagacaatatggattgaaaatgaatccatt 56019  T
Q  172 aaaatgtgcatttggggtttgtgcatgtgattttctaggtttcgtggtgcataaaaagggaatcgaaatcaaccagaacaaaaccaaggcaataatcgag 271  Q
    |||||||||||| |||||||||||| ||||| || |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||     
T  56020 aaaatgtgcattcggggtttgtgcaggtgatattttaggtttcgtggtgcataaaaaaggaatcgaaatcaaccagaacaaaaccaaggcaataattgac 56119  T
Q  272 accaaagctccttctacgaagaaagagttgcagtcactattaggaaaaatcaactttctcaggaggtttatatcaaatctaagtggcaagacacaagctt 371  Q
    ||  |||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||    
T  56120 actcaagctccttctacgaagaaagagttgcagtcattgttaggaaaaatcaactttctcaggaggtttatatcgaatctaagtggcatgacacaagctt 56219  T
Q  372 tctcgccattactccgactaaagaaaga 399  Q
    ||||||||||||| ||| ||||||||||    
T  56220 tctcgccattactacgattaaagaaaga 56247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0046; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 11 - 76
Target Start/End: Original strand, 35396 - 35461
Alignment:
Q  11 cagagagcgatgaatttaatgtttcatgatttcatagagaattttatgcaaatttacattgatgat 76  Q
    ||||||||||||||||||||||||||||||||||||||  |||||||| ||||||| |||||||||    
T  35396 cagagagcgatgaatttaatgtttcatgatttcatagaagattttatgaaaatttatattgatgat 35461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0100 (Bit Score: 150; Significance: 4e-79; HSPs: 1)
Name: scaffold0100
Description:

Target: scaffold0100; HSP #1
Raw Score: 150; E-Value: 4e-79
Query Start/End: Original strand, 14 - 431
Target Start/End: Original strand, 887 - 1304
Alignment:
Q  14 agagcgatgaatttaatgtttcatgatttcatagagaattttatgcaaatttacattgatgatattgtggtaaaatcttcttcggaggaaagacatttga 113  Q
    |||||||||||||  ||||||||||| ||||||||| |||| |||||||||||||| |||||| |||| |||||||| || || || |||| ||| ||      
T  887 agagcgatgaattcgatgtttcatgacttcatagaggatttcatgcaaatttacatcgatgatgttgtagtaaaatcatcctcagaagaaaaacacttag 986  T
Q  114 aacatttacgccgatcgtttgaaaggatgaggcgatatggattgaaaatgaatccattaaaatgtgcatttggggtttgtgcatgtgattttctaggttt 213  Q
      || |||||| | || || |||||||| |||| ||||||||| |||||||||||||||||||| |  ||||| ||||||||| |||||||| |||||||    
T  987 ttcacttacgcagttcattcgaaaggataaggcaatatggattaaaaatgaatccattaaaatgcgtgtttggtgtttgtgcaggtgattttttaggttt 1086  T
Q  214 cgtggtgcataaaaagggaatcgaaatcaaccagaacaaaaccaaggcaataatcgagaccaaagctccttctacgaagaaagagttgcagtcactatta 313  Q
     ||||| |  ||||||||||| |||||  |||| ||||||||||||| |||||| |||||  |||| |||||||| ||||||||  |||||||  ||||     
T  1087 tgtggtcctcaaaaagggaattgaaatttaccaaaacaaaaccaaggtaataatagagactcaagccccttctacaaagaaagatctgcagtctttattg 1186  T
Q  314 ggaaaaatcaactttctcaggaggtttatatcaaatctaagtggcaagacacaagctttctcgccattactccgactaaagaaagaggatgttttcaaat 413  Q
    |||||||||||||||||||  || || ||||| |||||||||||||||||||| | ||||||||||||||| || || |||||||| ||| | |||||||    
T  1187 ggaaaaatcaactttctcaaaagattcatatcgaatctaagtggcaagacacaggttttctcgccattacttcgtctgaagaaagaagatatgttcaaat 1286  T
Q  414 gggagccggaacaccaaa 431  Q
    |||| || || |||||||    
T  1287 gggaaccagagcaccaaa 1304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0023 (Bit Score: 111; Significance: 7e-56; HSPs: 4)
Name: scaffold0023
Description:

Target: scaffold0023; HSP #1
Raw Score: 111; E-Value: 7e-56
Query Start/End: Original strand, 198 - 332
Target Start/End: Original strand, 66295 - 66429
Alignment:
Q  198 gtgattttctaggtttcgtggtgcataaaaagggaatcgaaatcaaccagaacaaaaccaaggcaataatcgagaccaaagctccttctacgaagaaaga 297  Q
    |||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  66295 gtgactttctaggtttcgtagtgcataaaaagggaatcgaaatcaaccagaacaaaaccaaggcaataattgagaccaaagctccttctacgaagaaaga 66394  T
Q  298 gttgcagtcactattaggaaaaatcaactttctca 332  Q
     ||||||||| || |||||||||||||||||||||    
T  66395 attgcagtcattactaggaaaaatcaactttctca 66429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0023; HSP #2
Raw Score: 111; E-Value: 7e-56
Query Start/End: Original strand, 198 - 332
Target Start/End: Original strand, 75473 - 75607
Alignment:
Q  198 gtgattttctaggtttcgtggtgcataaaaagggaatcgaaatcaaccagaacaaaaccaaggcaataatcgagaccaaagctccttctacgaagaaaga 297  Q
    |||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  75473 gtgactttctaggtttcgtagtgcataaaaagggaatcgaaatcaaccagaacaaaaccaaggcaataattgagaccaaagctccttctacgaagaaaga 75572  T
Q  298 gttgcagtcactattaggaaaaatcaactttctca 332  Q
     ||||||||| || |||||||||||||||||||||    
T  75573 attgcagtcattactaggaaaaatcaactttctca 75607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0023; HSP #3
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 369 - 431
Target Start/End: Original strand, 66422 - 66484
Alignment:
Q  369 ctttctcgccattactccgactaaagaaagaggatgttttcaaatgggagccggaacaccaaa 431  Q
    ||||||| ||| ||||||||||||||||||| ||||||||||||||||| ||  |||||||||    
T  66422 ctttctcaccaatactccgactaaagaaagatgatgttttcaaatgggaaccaaaacaccaaa 66484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0023; HSP #4
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 369 - 431
Target Start/End: Original strand, 75600 - 75662
Alignment:
Q  369 ctttctcgccattactccgactaaagaaagaggatgttttcaaatgggagccggaacaccaaa 431  Q
    ||||||| ||| ||||||||||||||||||| ||||||||||||||||| ||  |||||||||    
T  75600 ctttctcaccaatactccgactaaagaaagatgatgttttcaaatgggaaccaaaacaccaaa 75662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0013 (Bit Score: 105; Significance: 3e-52; HSPs: 4)
Name: scaffold0013
Description:

Target: scaffold0013; HSP #1
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 199 - 431
Target Start/End: Original strand, 150940 - 151172
Alignment:
Q  199 tgattttctaggtttcgtggtgcataaaaagggaatcgaaatcaaccagaacaaaaccaaggcaataatcgagaccaaagctccttctacgaagaaagag 298  Q
    ||||||| ||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||| |||||  | || |||||||| |||||||||    
T  150940 tgattttttaggtttcgtggtccataaaaagggaattgaaatcaaccagaacaaaaccaaggcaataattgagactcaggccccttctacaaagaaagag 151039  T
Q  299 ttgcagtcactattaggaaaaatcaactttctcaggaggtttatatcaaatctaagtggcaagacacaagctttctcgccattactccgactaaagaaag 398  Q
    ||||||||  || ||| |||||| |||||||| || || || ||||| ||| |||||||||||||| ||||| ||||||||||||| ||  | ||||| |    
T  151040 ttgcagtctttactagaaaaaataaactttcttagaagattcatatcgaatttaagtggcaagacataagctgtctcgccattacttcgcttgaagaagg 151139  T
Q  399 aggatgttttcaaatgggagccggaacaccaaa 431  Q
    | ||||||||||||| ||| ||  |||||||||    
T  151140 aagatgttttcaaattggaaccaaaacaccaaa 151172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0013; HSP #2
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 14 - 243
Target Start/End: Original strand, 85081 - 85310
Alignment:
Q  14 agagcgatgaatttaatgtttcatgatttcatagagaattttatgcaaatttacattgatgatattgtggtaaaatcttcttcggaggaaagacatttga 113  Q
    |||||||||||| | ||||| ||||||||||||||  |||| |||||| |||| ||  |||| |||||||| ||||| ||||  ||||| | ||| ||      
T  85081 agagcgatgaatctgatgttccatgatttcatagaagatttcatgcaattttatatctatgacattgtggtgaaatcctctttagaggagaaacacttag 85180  T
Q  114 aacatttacgccgatcgtttgaaaggatgaggcgatatggattgaaaatgaatccattaaaatgtgcatttggggtttgtgcatgtgattttctaggttt 213  Q
    | |||||||||||||| ||  |||||||||||| ||||||||||||||||||||||||||||||||| ||||| ||||||||| |||| ||| |||||||    
T  85181 atcatttacgccgatcattctaaaggatgaggcaatatggattgaaaatgaatccattaaaatgtgcgtttggtgtttgtgcaggtgactttttaggttt 85280  T
Q  214 cgtggtgcataaaaagggaatcgaaatcaa 243  Q
    |||||| |||||||||||||| ||||||||    
T  85281 cgtggtccataaaaagggaattgaaatcaa 85310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0013; HSP #3
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 14 - 179
Target Start/End: Original strand, 77274 - 77439
Alignment:
Q  14 agagcgatgaatttaatgtttcatgatttcatagagaattttatgcaaatttacattgatgatattgtggtaaaatcttcttcggaggaaagacatttga 113  Q
    |||||||||||| | ||||| ||||||||||||||  |||| ||||||||||| ||  |||| |||||||| ||||| ||||  ||||| | ||| ||      
T  77274 agagcgatgaatctgatgttccatgatttcatagaagatttcatgcaaatttatatctatgacattgtggtgaaatcctctttagaggagaaacacttag 77373  T
Q  114 aacatttacgccgatcgtttgaaaggatgaggcgatatggattgaaaatgaatccattaaaatgtg 179  Q
    | |||||||||||||| ||  |||||||||||| ||||||||||||||||||||||||||||||||    
T  77374 atcatttacgccgatcattctaaaggatgaggcaatatggattgaaaatgaatccattaaaatgtg 77439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0013; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 18 - 129
Target Start/End: Original strand, 150817 - 150928
Alignment:
Q  18 cgatgaatttaatgtttcatgatttcatagagaattttatgcaaatttacattgatgatattgtggtaaaatcttcttcggaggaaagacatttgaaaca 117  Q
    |||||||| | ||||| ||||||||||||||  |||| ||||||||||| ||  |||| |||||||| ||||| ||||  ||||| | ||| ||  | ||    
T  150817 cgatgaatctgatgttccatgatttcatagaagatttcatgcaaatttatatctatgacattgtggtgaaatcctctttagaggagaaacacttagatca 150916  T
Q  118 tttacgccgatc 129  Q
    ||||||||||||    
T  150917 tttacgccgatc 150928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0401 (Bit Score: 51; Significance: 5e-20; HSPs: 1)
Name: scaffold0401
Description:

Target: scaffold0401; HSP #1
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 151 - 417
Target Start/End: Original strand, 5810 - 6076
Alignment:
Q  151 tggattgaaaatgaatccattaaaatgtgcatttggggtttgtgcatgtgattttctaggtttcgtggtgcataaaaagggaatcgaaatcaaccagaac 250  Q
    |||||||||||||||||||||||||||||||||||| ||  ||| | |||||||| ||||||| || || || ||||| || || || ||||| || |||    
T  5810 tggattgaaaatgaatccattaaaatgtgcatttggtgtacgtgtaggtgattttttaggttttgttgttcacaaaaaaggcattgagatcaatcaaaac 5909  T
Q  251 aaaaccaaggcaataatcgagaccaaagctccttctacgaagaaagagttgcagtcactattaggaaaaatcaactttctcaggaggtttatatcaaatc 350  Q
    ||||  || || ||  | ||||| ||| |  | || || ||||||||| | || ||  | || |||||||||||||||||||| || ||||| || ||||    
T  5910 aaaataaaagcgattttggagacaaaaccgtcatcaacaaagaaagagcttcaatctttgttgggaaaaatcaactttctcagaagatttatttctaatc 6009  T
Q  351 taagtggcaagacacaagctttctcgccattactccgactaaagaaagaggatgttttcaaatggga 417  Q
    ||| |||||| ||  |||| ||||| |||||||| ||| | | |||||| ||| | |||||||||||    
T  6010 taaatggcaaaactgaagcgttctcaccattacttcgattgaggaaagaagatatattcaaatggga 6076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0757 (Bit Score: 50; Significance: 2e-19; HSPs: 1)
Name: scaffold0757
Description:

Target: scaffold0757; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 134 - 431
Target Start/End: Original strand, 2879 - 3175
Alignment:
Q  134 gaaaggatgaggcgatatggattgaaaatgaatccattaaaatgtgcatttggggtttgtgcatgtgattttctaggtttcgtggtgcataaaaagggaa 233  Q
    ||||||||||||  ||||||||||||||||||||||||||||||||| |||||  || ||||| ||||| || ||||||| || ||||| |||||||| |    
T  2879 gaaaggatgaggaaatatggattgaaaatgaatccattaaaatgtgcctttggtattcgtgcaggtgatattttaggttttgttgtgcacaaaaagggca 2978  T
Q  234 tcgaaatcaaccagaacaaaaccaaggcaataatcgagaccaaagctccttctacgaagaaagagttgcagtcactattaggaaaaatcaactttctcag 333  Q
    | || || || || |||||||| || |  ||  | || || ||  | ||||  || ||||||||| | || ||  | || |||||||||||||||||||     
T  2979 ttgagat-aatcaaaacaaaacaaaagtgattttggaaacaaagccgcctttgacaaagaaagagcttcaatctttgttgggaaaaatcaactttctcat 3077  T
Q  334 gaggtttatatcaaatctaagtggcaagacacaagctttctcgccattactccgactaaagaaagaggatgttttcaaatgggagccggaacaccaaa 431  Q
     |  ||||| ||||||||| ||||||| ||  |||||||||||||| | || ||| | |||||||  ||||| ||||| ||||| || ||||| ||||    
T  3078 aacatttatttcaaatctatgtggcaaaactgaagctttctcgccactgcttcgattgaagaaagcagatgtgttcaagtgggaaccagaacatcaaa 3175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0016 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: scaffold0016
Description:

Target: scaffold0016; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 14 - 144
Target Start/End: Complemental strand, 177601 - 177471
Alignment:
Q  14 agagcgatgaatttaatgtttcatgatttcatagagaattttatgcaaatttacattgatgatattgtggtaaaatcttcttcggaggaaagacatttga 113  Q
    |||||||||||| | ||||||||||||||||||||  |||| ||||||||||| ||  | || |||||||||||||| ||||| ||||||| ||| ||      
T  177601 agagcgatgaatctgatgtttcatgatttcatagaagatttcatgcaaatttatatcaacgacattgtggtaaaatcctcttcagaggaaaaacacttag 177502  T
Q  114 aacatttacgccgatcgtttgaaaggatgag 144  Q
    | ||  |||||||||| || |||||||||||    
T  177501 atcacctacgccgatcattcgaaaggatgag 177471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0037 (Bit Score: 44; Significance: 7e-16; HSPs: 1)
Name: scaffold0037
Description:

Target: scaffold0037; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 234 - 417
Target Start/End: Original strand, 66981 - 67163
Alignment:
Q  234 tcgaaatcaaccagaacaaaaccaaggcaataatcgagaccaaagctccttctacgaagaaagagttgcagtcactattaggaaaaatcaactttctcag 333  Q
    |||||||||| |||||||||||||| |||||    ||||  ||||| |||||  ||||| ||||| |||||||  || |||| |||||||| ||||||||    
T  66981 tcgaaatcaatcagaacaaaaccaaagcaattcaggagagtaaagccccttcgtcgaaggaagagctgcagtctttactagggaaaatcaa-tttctcag 67079  T
Q  334 gaggtttatatcaaatctaagtggcaagacacaagctttctcgccattactccgactaaagaaagaggatgttttcaaatggga 417  Q
      ||||||| || |||||||||| ||| || |||||||| |||||||| ||  | ||||| ||||| || || |||||||||||    
T  67080 atggtttatttcgaatctaagtgacaaaacgcaagctttttcgccattgctttgcctaaaaaaagaagacgtattcaaatggga 67163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0093 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: scaffold0093
Description:

Target: scaffold0093; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 366 - 417
Target Start/End: Complemental strand, 54467 - 54416
Alignment:
Q  366 aagctttctcgccattactccgactaaagaaagaggatgttttcaaatggga 417  Q
    |||||||||||||||| || ||||| |||||||| |||||||||||||||||    
T  54467 aagctttctcgccattgcttcgactgaagaaagaagatgttttcaaatggga 54416  T

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