View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9308_low_11 (Length: 440)

Name: NF9308_low_11
Description: NF9308
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9308_low_11
NF9308_low_11
[»] chr2 (4 HSPs)
chr2 (6-309)||(14953395-14953698)
chr2 (349-425)||(14953277-14953353)
chr2 (359-426)||(40833270-40833336)
chr2 (353-426)||(14002214-14002287)
[»] chr7 (3 HSPs)
chr7 (6-309)||(4561422-4561725)
chr7 (349-425)||(4561772-4561848)
chr7 (358-426)||(1101734-1101801)
[»] chr8 (2 HSPs)
chr8 (6-309)||(5370525-5370828)
chr8 (349-425)||(5370406-5370482)
[»] chr3 (2 HSPs)
chr3 (355-426)||(46697191-46697262)
chr3 (167-204)||(46697010-46697047)
[»] chr6 (1 HSPs)
chr6 (361-426)||(23885849-23885914)
[»] chr4 (1 HSPs)
chr4 (358-426)||(56398469-56398536)
[»] chr1 (1 HSPs)
chr1 (353-426)||(6284577-6284650)
[»] chr5 (1 HSPs)
chr5 (386-418)||(37606037-37606069)


Alignment Details
Target: chr2 (Bit Score: 284; Significance: 1e-159; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 6 - 309
Target Start/End: Complemental strand, 14953698 - 14953395
Alignment:
Q  6 tttggtggtgacagtagaagtggttggatttgtaggaggtggagacatatttgaattgatcggatctgaagaggaaagcagaaaatgttccggtgtttgt 105  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14953698 tttggtggtgacagcagaagtggttggatttgtaggaggtggagacatatttgaattgatcggatctgaagaggaaagcagaaaatgttccggtgtttgt 14953599  T
Q  106 cagttggtgatcggaatctgagagttgcaggtcgtttgcagaagcggaaagaaggacaaacttgttggtggtggtcagatctaagctgatcggagaagaa 205  Q
    ||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14953598 cagtcagtgatcggaatctgagagttgcaggtcgtttgcagaagcggaaagaaggacaaacttgttggtggtggtcagatctaagctgatcggagaagaa 14953499  T
Q  206 tgagaaagcagttgtaggtgagagcttagacggcggtggttgtagagagacggcggtgagagagacagtgggtgccgggaggtggtgagagaatgtcacg 305  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  14953498 tgagaaagcagtggtaggtgagagcttagacggcggtggttgtagagagacagcggtgagagagacagtgggtgccgggaggtggtgagagaatgtcacg 14953399  T
Q  306 taag 309  Q
    ||||    
T  14953398 taag 14953395  T

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Target: chr2; HSP #2
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 349 - 425
Target Start/End: Complemental strand, 14953353 - 14953277
Alignment:
Q  349 gaacactgatgtataaataccgtataaatatacggtgaacagtgtttggtgtcatatttgtgtttgtattttgatgt 425  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  14953353 gaacactgatgtataaataccgtataaatatacggtgaacagtgtttggtgtcaaatttgtgtttgtattttgatgt 14953277  T

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Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 359 - 426
Target Start/End: Original strand, 40833270 - 40833336
Alignment:
Q  359 gtataaataccgtataaatatacggtgaacagtgtttggtgtcatatttgtgtttgtattttgatgtc 426  Q
    |||||||||||||||||| ||||||| |||| | |||||||||| |||||| |||||| |||||||||    
T  40833270 gtataaataccgtataaacatacggtcaacaatatttggtgtcaaatttgt-tttgtaatttgatgtc 40833336  T

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Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 353 - 426
Target Start/End: Original strand, 14002214 - 14002287
Alignment:
Q  353 actgatgtataaataccgtataaatatacggtgaacagtgtttggtgtcatatttgtgtttgtattttgatgtc 426  Q
    |||| ||||| |||||||||||||||||  | ||||  |||||| ||||  |||||| ||||||||||||||||    
T  14002214 actggtgtatcaataccgtataaatatattgcgaactttgtttgatgtctaatttgtatttgtattttgatgtc 14002287  T

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Target: chr7 (Bit Score: 280; Significance: 1e-156; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 280; E-Value: 1e-156
Query Start/End: Original strand, 6 - 309
Target Start/End: Original strand, 4561422 - 4561725
Alignment:
Q  6 tttggtggtgacagtagaagtggttggatttgtaggaggtggagacatatttgaattgatcggatctgaagaggaaagcagaaaatgttccggtgtttgt 105  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4561422 tttggtggtgacagcagaagtggttggatttgtaggaggtggagacatatttgaattgatcggatctgaagaggaaagcagaaaatgttccggtgtttgt 4561521  T
Q  106 cagttggtgatcggaatctgagagttgcaggtcgtttgcagaagcggaaagaaggacaaacttgttggtggtggtcagatctaagctgatcggagaagaa 205  Q
    |||| ||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4561522 cagtcggtgatctgaatctgagagttgcaggtcgtttgcagaagtggaaagaaggacaaacttgttggtggtggtcagatctaagctgatcggagaagaa 4561621  T
Q  206 tgagaaagcagttgtaggtgagagcttagacggcggtggttgtagagagacggcggtgagagagacagtgggtgccgggaggtggtgagagaatgtcacg 305  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  4561622 tgagaaagcagtggtaggtgagagcttagacggcggtggttgtagagagacagcggtgagagagacagtgggtgccgggaggtggtgagagaatgtcacg 4561721  T
Q  306 taag 309  Q
    ||||    
T  4561722 taag 4561725  T

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Target: chr7; HSP #2
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 349 - 425
Target Start/End: Original strand, 4561772 - 4561848
Alignment:
Q  349 gaacactgatgtataaataccgtataaatatacggtgaacagtgtttggtgtcatatttgtgtttgtattttgatgt 425  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  4561772 gaacactgatgtataaataccgtataaatatacggtgaacagtgtttggtgtcaaatttgtgtttgtattttgatgt 4561848  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 358 - 426
Target Start/End: Original strand, 1101734 - 1101801
Alignment:
Q  358 tgtataaataccgtataaatatacggtgaacagtgtttggtgtcatatttgtgtttgtattttgatgtc 426  Q
    |||| |||||| |||||| |||||| |||||||||| || ||||  |||||||||||||||||| ||||    
T  1101734 tgtacaaatactgtataa-tatacgatgaacagtgtatgatgtctaatttgtgtttgtattttggtgtc 1101801  T

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Target: chr8 (Bit Score: 276; Significance: 1e-154; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 6 - 309
Target Start/End: Complemental strand, 5370828 - 5370525
Alignment:
Q  6 tttggtggtgacagtagaagtggttggatttgtaggaggtggagacatatttgaattgatcggatctgaagaggaaagcagaaaatgttccggtgtttgt 105  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5370828 tttggtggtgacagcagaagtggttggatttgtaggaggtggagacatatttgaattgatcggatctgaagaggaaagcagaaaatgttccggtgtttgt 5370729  T
Q  106 cagttggtgatcggaatctgagagttgcaggtcgtttgcagaagcggaaagaaggacaaacttgttggtggtggtcagatctaagctgatcggagaagaa 205  Q
    ||||  |||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5370728 cagtcagtgatcagaatctgagagttgcaggtcgtttgcagaagaggaaagaaggacaaacttgttggtggtggtcagatctaagctgatcggagaagaa 5370629  T
Q  206 tgagaaagcagttgtaggtgagagcttagacggcggtggttgtagagagacggcggtgagagagacagtgggtgccgggaggtggtgagagaatgtcacg 305  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  5370628 tgagaaagcagtggtaggtgagagcttagacggcggtggttgtagagagacagcggtgagagagacagtgggtgccgggaggtggtgagagaatgtcacg 5370529  T
Q  306 taag 309  Q
    ||||    
T  5370528 taag 5370525  T

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Target: chr8; HSP #2
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 349 - 425
Target Start/End: Complemental strand, 5370482 - 5370406
Alignment:
Q  349 gaacactgatgtataaataccgtataaatatacggtgaacagtgtttggtgtcatatttgtgtttgtattttgatgt 425  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  5370482 gaacactgatatataaataccgtataaatatacggtgaacagtgtttggtgtcaaatttgtgtttgtattttgatgt 5370406  T

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Target: chr3 (Bit Score: 68; Significance: 3e-30; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 355 - 426
Target Start/End: Original strand, 46697191 - 46697262
Alignment:
Q  355 tgatgtataaataccgtataaatatacggtgaacagtgtttggtgtcatatttgtgtttgtattttgatgtc 426  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  46697191 tgatgtataaataccgtataaatatacggtgaacagtgtttggtgtcaaatttgtgtttgtattttgatgtc 46697262  T

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Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 167 - 204
Target Start/End: Original strand, 46697010 - 46697047
Alignment:
Q  167 ttgttggtggtggtcagatctaagctgatcggagaaga 204  Q
    ||||||||||||||||||||| ||||||||||||||||    
T  46697010 ttgttggtggtggtcagatctgagctgatcggagaaga 46697047  T

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Target: chr6 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 361 - 426
Target Start/End: Complemental strand, 23885914 - 23885849
Alignment:
Q  361 ataaataccgtataaatatacggtgaacagtgtttggtgtcatatttgtgtttgtattttgatgtc 426  Q
    |||||||| |||||||||||| || ||||||||||| ||||  |||||||||||||||||||||||    
T  23885914 ataaatactgtataaatatactgtaaacagtgtttgatgtctaatttgtgtttgtattttgatgtc 23885849  T

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Target: chr4 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 358 - 426
Target Start/End: Original strand, 56398469 - 56398536
Alignment:
Q  358 tgtataaataccgtataaatatacggtgaacagtgtttggtgtcatatttgtgtttgtattttgatgtc 426  Q
    |||| |||||| |||||| |||||| ||||||||||||| ||||  |||||||||||||||||||||||    
T  56398469 tgtacaaatactgtataa-tatacgatgaacagtgtttgatgtctaatttgtgtttgtattttgatgtc 56398536  T

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Target: chr1 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 353 - 426
Target Start/End: Complemental strand, 6284650 - 6284577
Alignment:
Q  353 actgatgtataaataccgtataaatatacggtgaacagtgtttggtgtcatatttgtgtttgtattttgatgtc 426  Q
    |||||| ||| ||||||||||||| ||||  |||| | |||||| ||||  |||||||||||||||||||||||    
T  6284650 actgatatatgaataccgtataaagatactatgaataatgtttgatgtctaatttgtgtttgtattttgatgtc 6284577  T

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Target: chr5 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 386 - 418
Target Start/End: Original strand, 37606037 - 37606069
Alignment:
Q  386 aacagtgtttggtgtcatatttgtgtttgtatt 418  Q
    |||||||| ||||||||||||||||||||||||    
T  37606037 aacagtgtatggtgtcatatttgtgtttgtatt 37606069  T

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