View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9308_low_12 (Length: 440)
Name: NF9308_low_12
Description: NF9308
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9308_low_12 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 391; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 391; E-Value: 0
Query Start/End: Original strand, 18 - 424
Target Start/End: Original strand, 20665953 - 20666359
Alignment:
| Q |
18 |
acatcaaaagtagtggcaatgttaacaacaaattcttataattaacacattttcagcgaactcacttgtcagaaccagaagaggatcctttgttctcatc |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20665953 |
acatcaaaagtagtggcaatgttaacaacaaattcttataattaacacattttcagcgaactcacttgtcagaaccagaagaggatcctttgttctcatc |
20666052 |
T |
|
| Q |
118 |
aaccaagttaatcacaaaaaccttcgaagtaaagggtaaaggaccagcagtatacagactcttcctcccatcataagcaggaatgcgattcccaagcatg |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20666053 |
aaccaagttaatcacaaaaaccttcgaagtaaagggtaaaggaccagcagtaaacagactcttcctcccatcataagcaggaatgcgattcccaagcatg |
20666152 |
T |
|
| Q |
218 |
gactcttggtgcattttcactaactggttgataacatccctcgacactttctttgaagtaatctccggcgcaaatgatacctgaaaacaataaccaaaat |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20666153 |
gactcttggtgcattttcactaactggttgataacatccctcgacactttctttgaagtaatctccggcgcaaatgatacctgaaaacaataaccaaaat |
20666252 |
T |
|
| Q |
318 |
tttcagcctctcttaaccgtaacacattgcaacttactagcattattgtttcaaattaacataacaaacagaaacaaaacctgaacacttcaaatttgag |
417 |
Q |
| |
|
|||||||||||||||||||||| |||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20666253 |
tttcagcctctcttaaccgtaaaacattgtaacttactggcattattgtttcaaattaacataacaaacagaaacaaaacctgaacacttcaaatttgag |
20666352 |
T |
|
| Q |
418 |
ttaaaaa |
424 |
Q |
| |
|
||||||| |
|
|
| T |
20666353 |
ttaaaaa |
20666359 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 66 - 307
Target Start/End: Original strand, 20690351 - 20690592
Alignment:
| Q |
66 |
attttcagcgaactcacttgtcagaaccagaagaggatcctttgttctcatcaaccaagttaatcacaaaaaccttcgaagtaaagggtaaaggaccagc |
165 |
Q |
| |
|
|||| |||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||| |||||||| |
|
|
| T |
20690351 |
atttacagcaaactcacgtgtcagaaccagaagaggatcctttgttctcatcaaccaagttaatcacaaaaaccttcgacgtaaatggtaatggaccagc |
20690450 |
T |
|
| Q |
166 |
agtatacagactcttcctcccatcataagcaggaatgcgattcccaagcatggactcttggtgcattttcactaactggttgataacatccctcgacact |
265 |
Q |
| |
|
|||| |||||||||| ||||||||||| |||||||| | |||||| | | |||||| | ||||||||||| ||||| |||||||||||||| |||||| |
|
|
| T |
20690451 |
agtaaacagactctttctcccatcataggcaggaatcctattccccaatagggactccttatgcattttcaccaactgattgataacatccctggacact |
20690550 |
T |
|
| Q |
266 |
ttctttgaagtaatctccggcgcaaatgatacctgaaaacaa |
307 |
Q |
| |
|
||||| || | |||||| || |||| |||||| ||||||| |
|
|
| T |
20690551 |
ttcttcgatgcaatctcaggtgcaatcaatacctaaaaacaa |
20690592 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University