View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9308_low_15 (Length: 430)
Name: NF9308_low_15
Description: NF9308
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9308_low_15 |
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| [»] scaffold0196 (1 HSPs) |
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| [»] scaffold0019 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 354; Significance: 0; HSPs: 8)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 354; E-Value: 0
Query Start/End: Original strand, 18 - 424
Target Start/End: Complemental strand, 11622538 - 11622124
Alignment:
| Q |
18 |
aaatgatcacattaagtgctccatattttacgtgttatcgcttatgtgctatacaaggtcaaaatcttaaataaaaaatctataagtaggtttcgttgtc |
117 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11622538 |
aaatgatcacattaagtgctccatattgtacgtgttatcgcttatgtgctatacaaggtcaaaatcttaaataaaaaatctataagtaggtttcgttgtc |
11622439 |
T |
|
| Q |
118 |
cgataaactctattgtttgtagtcttacattgtccgtgtattagcaacggattactatcgttaaagaaaatggctttaaagctattgattagtctgtatg |
217 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||| |||||||||||||||||||||||| |
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|
| T |
11622438 |
cgataaactctattgtttgtagtcttacattgtccgtgtattagcaatggattattatcgttaaagaaaatggctataaagctattgattagtctgtatg |
11622339 |
T |
|
| Q |
218 |
tttttgttacatgagatggag--------ggatagtaaaactcgaaaagaaacttaccatcacttatagcaagaaccatattgcaatccagcacagttgg |
309 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
11622338 |
tttttgttacatgagatggagggattgagggatagtaaaactcgaaaagaaacttaccatcacttatagcaagaaccatattgcaatccatcacagttgg |
11622239 |
T |
|
| Q |
310 |
tattctgtgtgcgacagtgattactgtacaatctgcgaattcagccctaatggttttttgcacaatcagatcagtagaattatcaattgacgcagttgct |
409 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
11622238 |
tattctgtgtgcgacagtgattactgtacaatctgcgaactcagccctaatggttttctgcacaatcagatcagtagaattatcaattgacgcagttgct |
11622139 |
T |
|
| Q |
410 |
tcgtccaacaccaaa |
424 |
Q |
| |
|
|||||||| |||||| |
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|
| T |
11622138 |
tcgtccaataccaaa |
11622124 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 260 - 423
Target Start/End: Original strand, 11670141 - 11670304
Alignment:
| Q |
260 |
aacttaccatcacttatagcaagaaccatattgcaatccagcacagttggtattctgtgtgcgacagtgattactgtacaatctgcgaattcagccctaa |
359 |
Q |
| |
|
|||| ||||||||||||||||||||||||| ||||||||| ||||||||||| |||||||| || ||||| || ||||||||||| || |||||||||| |
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| T |
11670141 |
aactcaccatcacttatagcaagaaccatagtgcaatccattacagttggtatcctgtgtgctactgtgatcaccgtacaatctgcaaactcagccctaa |
11670240 |
T |
|
| Q |
360 |
tggttttttgcacaatcagatcagtagaattatcaattgacgcagttgcttcgtccaacaccaa |
423 |
Q |
| |
|
||||||| |||| ||| ||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
11670241 |
tggttttctgcagaataagatcagtagaattatcaattgaagcagttgcttcgtccaacaccaa |
11670304 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 258 - 423
Target Start/End: Original strand, 11628225 - 11628390
Alignment:
| Q |
258 |
gaaacttaccatcacttatagcaagaaccatattgcaatccagcacagttggtattctgtgtgcgacagtgattactgtacaatctgcgaattcagccct |
357 |
Q |
| |
|
|||||| |||||||||||| |||||||||||| ||||||||| |||||||||||| || ||||| || ||||| |||||||||||||| || |||||||| |
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| T |
11628225 |
gaaactcaccatcacttatggcaagaaccatactgcaatccatcacagttggtatcctatgtgccactgtgatcactgtacaatctgcaaactcagccct |
11628324 |
T |
|
| Q |
358 |
aatggttttttgcacaatcagatcagtagaattatcaattgacgcagttgcttcgtccaacaccaa |
423 |
Q |
| |
|
||||||||| || | ||| |||||||||||||||||||| || ||||||||||| ||||||||||| |
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|
| T |
11628325 |
aatggttttctggagaataagatcagtagaattatcaatcgaagcagttgcttcatccaacaccaa |
11628390 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 246 - 411
Target Start/End: Complemental strand, 11667201 - 11667036
Alignment:
| Q |
246 |
aaaactcgaaaagaaacttaccatcacttatagcaagaaccatattgcaatccagcacagttggtattctgtgtgcgacagtgattactgtacaatctgc |
345 |
Q |
| |
|
||||||| ||||| |||||||||||||| || | ||||||||||||||| |||| ||||||| |||| ||||| || || ||||| || ||||||||||| |
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| T |
11667201 |
aaaactcaaaaagcaacttaccatcactgattgaaagaaccatattgcagtccatcacagtttgtatcctgtgagctactgtgatcaccgtacaatctgc |
11667102 |
T |
|
| Q |
346 |
gaattcagccctaatggttttttgcacaatcagatcagtagaattatcaattgacgcagttgcttc |
411 |
Q |
| |
|
|| |||| ||||| ||||| |||| |||||||||||| || |||||||| || ||||||||||| |
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| T |
11667101 |
aaactcagttctaatagttttctgcagaatcagatcagttgagttatcaatcgatgcagttgcttc |
11667036 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 279 - 420
Target Start/End: Original strand, 11735544 - 11735685
Alignment:
| Q |
279 |
caagaaccatattgcaatccagcacagttggtattctgtgtgcgacagtgattactgtacaatctgcgaattcagccctaatggttttttgcacaatcag |
378 |
Q |
| |
|
||||||||||||||||||||| |||||||||||| |||||||| || ||||| || ||||||||||| || || |||||||||||||| | ||||| |
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| T |
11735544 |
caagaaccatattgcaatccatcacagttggtatcctgtgtgctaccgtgatcacagtacaatctgcaaactcctttctaatggttttttgtagaatcat |
11735643 |
T |
|
| Q |
379 |
atcagtagaattatcaattgacgcagttgcttcgtccaacac |
420 |
Q |
| |
|
||| || |||||||||||||| ||||||||||| |||||||| |
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|
| T |
11735644 |
atccgttgaattatcaattgatgcagttgcttcatccaacac |
11735685 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 264 - 423
Target Start/End: Complemental strand, 11759974 - 11759815
Alignment:
| Q |
264 |
taccatcacttatagcaagaaccatattgcaatccagcacagttggtattctgtgtgcgacagtgattactgtacaatctgcgaattcagccctaatggt |
363 |
Q |
| |
|
|||| |||||||| | |||||||||||||||||||| |||||||||||| |||||||| || ||||| |||||||||||||| || || |||||||| |
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| T |
11759974 |
taccgtcacttatggaaagaaccatattgcaatccatcacagttggtatcctgtgtgctactgtgatcactgtacaatctgcaaactcttttctaatggt |
11759875 |
T |
|
| Q |
364 |
tttttgcacaatcagatcagtagaattatcaattgacgcagttgcttcgtccaacaccaa |
423 |
Q |
| |
|
||||| | ||| | |||||| | |||||| ||||| ||||||||||| ||||||||||| |
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|
| T |
11759874 |
attttgaagaattaaatcagtcgcattatcgattgatgcagttgcttcatccaacaccaa |
11759815 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 254 - 411
Target Start/End: Original strand, 11706334 - 11706491
Alignment:
| Q |
254 |
aaaagaaacttaccatcacttatagcaagaaccatattgcaatccagcacagttggtattctgtgtgcgacagtgattactgtacaatctgcgaattcag |
353 |
Q |
| |
|
|||| ||||||||||||||| || | |||||||||| ||||||||| |||||| ||||| ||||| || || ||||| || ||| ||||||| || |||| |
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|
| T |
11706334 |
aaaaaaaacttaccatcactgattgaaagaaccatagtgcaatccatcacagtcggtatcctgtgagctactgtgatcaccgtagaatctgcaaactcag |
11706433 |
T |
|
| Q |
354 |
ccctaatggttttttgcacaatcagatcagtagaattatcaattgacgcagttgcttc |
411 |
Q |
| |
|
||||||||||| |||| |||||||||||| || |||||||| || ||||||||||| |
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|
| T |
11706434 |
ttctaatggttttctgcagaatcagatcagttgagttatcaatcgatgcagttgcttc |
11706491 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 264 - 411
Target Start/End: Original strand, 12089449 - 12089596
Alignment:
| Q |
264 |
taccatcacttatagcaagaaccatattgcaatccagcacagttggtattctgtgtgcgacagtgattactgtacaatctgcgaattcagccctaatggt |
363 |
Q |
| |
|
||||||||||||| | |||||||||||||||||||| |||||||||||| ||||| || || || || |||||||||||||| || || |||||||| |
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|
| T |
12089449 |
taccatcacttatggaaagaaccatattgcaatccatcacagttggtatcctgtgcgctactgttatcactgtacaatctgcaaactcttttctaatggt |
12089548 |
T |
|
| Q |
364 |
tttttgcacaatcagatcagtagaattatcaattgacgcagttgcttc |
411 |
Q |
| |
|
||||| | ||| | ||| || | |||||||||||| ||||||||||| |
|
|
| T |
12089549 |
attttgaagaattaaatcggtcgcattatcaattgatgcagttgcttc |
12089596 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0196 (Bit Score: 131; Significance: 8e-68; HSPs: 1)
Name: scaffold0196
Description:
Target: scaffold0196; HSP #1
Raw Score: 131; E-Value: 8e-68
Query Start/End: Original strand, 237 - 423
Target Start/End: Complemental strand, 16712 - 16526
Alignment:
| Q |
237 |
agggatagtaaaactcgaaaagaaacttaccatcacttatagcaagaaccatattgcaatccagcacagttggtattctgtgtgcgacagtgattactgt |
336 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||| |||||||| || ||||| ||||| |
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|
| T |
16712 |
agggatagtaaaactcgaaaagaaacttaccatcacttatagcaagaaccatattgcaatccatcaccgttggtatcctgtgtgctactgtgatcactgt |
16613 |
T |
|
| Q |
337 |
acaatctgcgaattcagccctaatggttttttgcacaatcagatcagtagaattatcaattgacgcagttgcttcgtccaacaccaa |
423 |
Q |
| |
|
||||||||| || ||| |||||||| ||||||| | ||| ||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
16612 |
acaatctgcaaactcaaccctaatgtttttttgtagaataagatcagtagaattatcaattgaagcagttgcttcgtccaacaccaa |
16526 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0019 (Bit Score: 106; Significance: 7e-53; HSPs: 1)
Name: scaffold0019
Description:
Target: scaffold0019; HSP #1
Raw Score: 106; E-Value: 7e-53
Query Start/End: Original strand, 254 - 423
Target Start/End: Original strand, 4797 - 4966
Alignment:
| Q |
254 |
aaaagaaacttaccatcacttatagcaagaaccatattgcaatccagcacagttggtattctgtgtgcgacagtgattactgtacaatctgcgaattcag |
353 |
Q |
| |
|
|||| |||| ||||||||||||||| |||||||||||||||||||| |||||||||||| |||||||| || ||||| |||||||||||||| || |||| |
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|
| T |
4797 |
aaaataaacgtaccatcacttatagaaagaaccatattgcaatccatcacagttggtatcctgtgtgctactgtgatcactgtacaatctgcaaactcag |
4896 |
T |
|
| Q |
354 |
ccctaatggttttttgcacaatcagatcagtagaattatcaattgacgcagttgcttcgtccaacaccaa |
423 |
Q |
| |
|
|||||||| ||||||||| ||||||||| ||||||||||||| ||| ||||||||||| ||||||||||| |
|
|
| T |
4897 |
ccctaatgattttttgcagaatcagatctgtagaattatcaactgatgcagttgcttcatccaacaccaa |
4966 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 55; Significance: 2e-22; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 261 - 411
Target Start/End: Complemental strand, 44815695 - 44815545
Alignment:
| Q |
261 |
acttaccatcacttatagcaagaaccatattgcaatccagcacagttggtattctgtgtgcgacagtgattactgtacaatctgcgaattcagccctaat |
360 |
Q |
| |
|
||||||||||||| || | ||||||| | ||||||||| |||||||||||| || || || || |||||||| |||||||| || ||||||| |||||| |
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|
| T |
44815695 |
acttaccatcactgattgaaagaaccttggtgcaatccatcacagttggtatcctatgagctactgtgattaccgtacaatcggcaaattcagtcctaat |
44815596 |
T |
|
| Q |
361 |
ggttttttgcacaatcagatcagtagaattatcaattgacgcagttgcttc |
411 |
Q |
| |
|
|||||| || | ||||| ||||| | |||||||||||| ||||||||||| |
|
|
| T |
44815595 |
ggttttctgtaaaatcaagtcagttgcattatcaattgatgcagttgcttc |
44815545 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 51; Significance: 4e-20; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 261 - 411
Target Start/End: Original strand, 16389605 - 16389755
Alignment:
| Q |
261 |
acttaccatcacttatagcaagaaccatattgcaatccagcacagttggtattctgtgtgcgacagtgattactgtacaatctgcgaattcagccctaat |
360 |
Q |
| |
|
||||||||||| | || | |||||||||| ||||||||| ||||||||| |||||||| || || |||||||||||||||||||| || || | ||||| |
|
|
| T |
16389605 |
acttaccatcattgattgaaagaaccatagtgcaatccatcacagttggaattctgtgcgctactgtgattactgtacaatctgcaaactcggttctaat |
16389704 |
T |
|
| Q |
361 |
ggttttttgcacaatcagatcagtagaattatcaattgacgcagttgcttc |
411 |
Q |
| |
|
|||||| ||| ||| |||||| |||||||| | ||| ||||||||||| |
|
|
| T |
16389705 |
ggttttcagcagaatataatcagttgaattatcgactgatgcagttgcttc |
16389755 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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