View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9308_low_17 (Length: 387)
Name: NF9308_low_17
Description: NF9308
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9308_low_17 |
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| [»] scaffold0334 (2 HSPs) |
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Alignment Details
Target: scaffold0334 (Bit Score: 255; Significance: 1e-142; HSPs: 2)
Name: scaffold0334
Description:
Target: scaffold0334; HSP #1
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 90 - 372
Target Start/End: Complemental strand, 4071 - 3789
Alignment:
| Q |
90 |
ttaatttattattattgggccatcgtggaacagcaaactgaaaatctgtgtatgagaagtattgaaaattcccaaatagaaatgataagatatagtttca |
189 |
Q |
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| T |
4071 |
ttaatttattattattgggccatcgtggaacagcaaactgaaaatatgtgtatgagaagtgttgaaaattcccaaatacaaaagataagatttagtttca |
3972 |
T |
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| Q |
190 |
agtttgtttaggagaatgtaatagtaatgctcaaaaatatttgaatcaaatttgagagtcaattaacattttaaaagcatatacacaaactgacctagga |
289 |
Q |
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| T |
3971 |
agtttgtttaggagaatgtaatagtaatgctcaaaaatatttgaatcaaatttgagagtcaattaacattttaaaagcatatacacaaactgacctagga |
3872 |
T |
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| Q |
290 |
catcgttttgtttgaatgtattattggcggcccaatccgagtaaaacgaagcaccacttggaacaatccaaccggtggtgcct |
372 |
Q |
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| T |
3871 |
catcgttttgtttgaatgtattactggcggcccaatccgagtaaaacgaagcaccacttggaacactccaaccggtggtgcct |
3789 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0334; HSP #2
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 1 - 98
Target Start/End: Complemental strand, 4455 - 4358
Alignment:
| Q |
1 |
gtgttaggcccaaccacgatttctaatacgtctattcaaaaaatactcaaaatttggtgcaaaatttgagacagtttaaaggcctatcattaatttat |
98 |
Q |
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| T |
4455 |
gtgttaggctcaaccatgatttctactatgtttattcaaaaaatactctaaatttggggcaaaatgtgagacagtgtaaaaggctatcattaatttat |
4358 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 276 - 339
Target Start/End: Complemental strand, 24910411 - 24910348
Alignment:
| Q |
276 |
aaactgacctaggacatcgttttgtttgaatgtattattggcggcccaatccgagtaaaacgaa |
339 |
Q |
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| T |
24910411 |
aaactcacctaggacatcgttttctttgaatgtgatattggaggcccaatcggagtaaaacgaa |
24910348 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 276 - 339
Target Start/End: Original strand, 25360215 - 25360278
Alignment:
| Q |
276 |
aaactgacctaggacatcgttttgtttgaatgtattattggcggcccaatccgagtaaaacgaa |
339 |
Q |
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| T |
25360215 |
aaactcacctaggacatcgttttctttgaatgtgatattggaggcccaatcggagtaaaacgaa |
25360278 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 29
Target Start/End: Original strand, 9685690 - 9685718
Alignment:
| Q |
1 |
gtgttaggcccaaccacgatttctaatac |
29 |
Q |
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| T |
9685690 |
gtgttaggcccaaccacgatttctaatac |
9685718 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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