View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9308_low_18 (Length: 385)
Name: NF9308_low_18
Description: NF9308
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9308_low_18 |
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| [»] chr5 (4 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 218; Significance: 1e-120; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 70 - 385
Target Start/End: Complemental strand, 2141241 - 2140931
Alignment:
| Q |
70 |
ttattgataatgtataaataaattgcaatagcttatactacagttctaattatacaggtggaaatcctacaactccaaagaataaaactatctannnnnn |
169 |
Q |
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| T |
2141241 |
ttattgataatgtataaataaattgcaatagcttatactacagttctaattatacaggtggaaatcctacaactccaaagaataaaactatctgtttttt |
2141142 |
T |
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| Q |
170 |
ncaagtagtatggggactaactggaattttgctcttcatgtgggtaactctatacctatgtaaagatagacagcaaaaccatatatccaacaaacacaaa |
269 |
Q |
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| T |
2141141 |
tc---taatatggggactaactggaattttgctcttcatgtgggtaactctatccctatgtaaagatagacagcaaaatcatac--ccaacaaacacaaa |
2141047 |
T |
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| Q |
270 |
caattatcatcatagaaccaagtgatcgggaaccctcttggtttgtgtttggacttgatcattcaaggatagaacaatatccaaagattcaactagcaga |
369 |
Q |
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|||||| | ||||||||||||| ||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2141046 |
caattacgaacatagaaccaagtaatcaggaacctcattggtttgtgtttggacttgatcattcaaggatagaacaatatccaaagattcaactagcaga |
2140947 |
T |
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| Q |
370 |
gagtggacaattgcct |
385 |
Q |
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| T |
2140946 |
gagtggacaattgcct |
2140931 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 82 - 385
Target Start/End: Complemental strand, 2145765 - 2145465
Alignment:
| Q |
82 |
tataaataaattgcaatagcttatactacagttctaattatacaggtggaaatcctacaactccaaagaataaaactatctannnnnnncaagtagtatg |
181 |
Q |
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| T |
2145765 |
tataaataaattgcaaaaacttatacta-agttctaattctataggcgtaaatcctccaagtccaaagcatgaaaatatctacttttttgaagtagtatg |
2145667 |
T |
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| Q |
182 |
gggactaactggaattttgctcttcatgtgggtaactctatacctatgtaaagatagacagcaaaaccatatatccaacaaacacaaacaattatcatca |
281 |
Q |
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| T |
2145666 |
gggagtaactggaattttgctcctcatgggggtaactctatccctatgtaaagatagacagcaaaaccatat--ccagcaaacacaaacaattatcatca |
2145569 |
T |
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| Q |
282 |
tagaaccaagtgatcgggaaccctcttggtttgtgtttggacttgatcattcaaggatagaacaatatccaaagattcaactagcagagagtggacaatt |
381 |
Q |
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| T |
2145568 |
tagaaccaagtgatcgggaaccctcttggtttgtgtttggacttgatcattcaaggatagaacaatatccaaagattcaactagtagagagtggacaatt |
2145469 |
T |
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| Q |
382 |
gcct |
385 |
Q |
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| T |
2145468 |
gcct |
2145465 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 121; E-Value: 7e-62
Query Start/End: Original strand, 177 - 384
Target Start/End: Complemental strand, 2150146 - 2149941
Alignment:
| Q |
177 |
gtatggggactaactggaattttgctcttcatgtgggtaactctatacctatgtaaagatagacagcaaaaccatatatccaacaaacacaaacaattat |
276 |
Q |
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||||||||| || ||||| ||||| ||||||||||||||||| ||| ||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
2150146 |
gtatggggaatatctggacttttgttcttcatgtgggtaactttatctgtatgtaaagatagacagcaaaaccatac--ccaacaaacacaaacaattac |
2150049 |
T |
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| Q |
277 |
catcatagaaccaagtgatcgggaaccctcttggtttgtgtttggacttgatcattcaaggatagaacaatatccaaagattcaactagcagagagtgga |
376 |
Q |
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| T |
2150048 |
gaacatagaaccaagtaatcaggaacctcattggtttgtgtttggacttgatcattcaaggatagaacaatatccaaagattcaacttgcagagaatgga |
2149949 |
T |
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| Q |
377 |
caattgcc |
384 |
Q |
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| T |
2149948 |
caattgcc |
2149941 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 1 - 78
Target Start/End: Complemental strand, 2141726 - 2141649
Alignment:
| Q |
1 |
ttatgatgttacttgttacaattactttgataacccaggtataactttttataatacaaatatatagttttattgata |
78 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2141726 |
ttatgatgttacttgttacagttactttgataacccaggtataactttttataatacaaatatatagttttattgata |
2141649 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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