View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9308_low_19 (Length: 381)
Name: NF9308_low_19
Description: NF9308
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9308_low_19 |
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Alignment Details
Target: chr5 (Bit Score: 162; Significance: 2e-86; HSPs: 6)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 1 - 213
Target Start/End: Original strand, 31714324 - 31714537
Alignment:
| Q |
1 |
ggcaaaggctcttgccaaatcattcccacaaatggaccgcactgtgtttgatcttccacatgttgttgatggcttgcaaggagttgataacttaaactat |
100 |
Q |
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||||||||||||||||||||||||||||||| | || ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
31714324 |
ggcaaaggctcttgccaaatcattcccacaattagagtgcactgtgtttgatcttccacatgttgttgatggcttgcaaggaggtgataacttaaactat |
31714423 |
T |
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| Q |
101 |
gttggtggagacatgtttgagagaattcctccagctgatgccattttgttgaaggtaaagtgttcattgttgtt-ggttaattcattttgaattattcca |
199 |
Q |
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||||||||||| |||||| |||||||||||||||||||||| ||||||||||||||||||||||| || |||| ||||||||||||||||||||||||| |
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| T |
31714424 |
gttggtggagatatgtttaagagaattcctccagctgatgctattttgttgaaggtaaagtgttctatgatgttgggttaattcattttgaattattcca |
31714523 |
T |
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| Q |
200 |
ttgtttgatttatg |
213 |
Q |
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|||||||||||||| |
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| T |
31714524 |
ttgtttgatttatg |
31714537 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 215 - 364
Target Start/End: Original strand, 31714573 - 31714722
Alignment:
| Q |
215 |
ttagtattatcttataataatctcacttaatttcaacatagattagcatgaggaagagaagtattattgagagaactaaaaatttgattgattctaaatg |
314 |
Q |
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| T |
31714573 |
ttagtattatcttataataatctcacttaatttcaacatagattagcatgaggaagagaagtattattgagagaactaaaaatttgattgattataaatg |
31714672 |
T |
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| Q |
315 |
tcaaatgtaacaggtatttctaatagagttcggagattttagatatactt |
364 |
Q |
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| T |
31714673 |
tcaaatgtaacaggtatttctattagagttcggagattttagatatactt |
31714722 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 1 - 159
Target Start/End: Original strand, 31711355 - 31711513
Alignment:
| Q |
1 |
ggcaaaggctcttgccaaatcattcccacaaatggaccgcactgtgtttgatcttccacatgttgttgatggcttgcaaggagttgataacttaaactat |
100 |
Q |
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||||||| |||||| ||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||| ||| || ||| ||| |
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| T |
31711355 |
ggcaaagactcttgtcaaatcattcccacaaatggagtgcattgtgtttgatcttccacatgttgttgatggcttgcaaggaagtgaaaagctaagatat |
31711454 |
T |
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| Q |
101 |
gttggtggagacatgtttgagagaattcctccagctgatgccattttgttgaaggtaaa |
159 |
Q |
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| T |
31711455 |
gttggtggagacatgtttaaggaaattccaccagcagatgcaattttgttgaaggtaaa |
31711513 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 9 - 158
Target Start/End: Original strand, 31684390 - 31684539
Alignment:
| Q |
9 |
ctcttgccaaatcattcccacaaatggaccgcactgtgtttgatcttccacatgttgttgatggcttgcaaggagttgataacttaaactatgttggtgg |
108 |
Q |
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|||||||||||||||||||||||||||| ||| ||| |||||||||||||||||||||||||| |||| |||| ||| |||||||||||||||||||| |
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| T |
31684390 |
ctcttgccaaatcattcccacaaatggagtgcattgtatttgatcttccacatgttgttgatggtttgctaggaagtgaaaacttaaactatgttggtgg |
31684489 |
T |
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| Q |
109 |
agacatgtttgagagaattcctccagctgatgccattttgttgaaggtaa |
158 |
Q |
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| T |
31684490 |
agacatgtttaaagaaattccgccaacagctgcaattttgttgaaggtaa |
31684539 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 1 - 161
Target Start/End: Original strand, 31734761 - 31734921
Alignment:
| Q |
1 |
ggcaaaggctcttgccaaatcattcccacaaatggaccgcactgtgtttgatcttccacatgttgttgatggcttgcaaggagttgataacttaaactat |
100 |
Q |
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||||||| || ||||||||||||||||||||||||| ||| |||||||||||| ||||||||||||||||| ||||||||| ||| || ||| |||| |
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| T |
31734761 |
ggcaaagacttttgccaaatcattcccacaaatggagtgcattgtgtttgatctaccacatgttgttgatggtttgcaaggaagtgagaatctaagctat |
31734860 |
T |
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| Q |
101 |
gttggtggagacatgtttgagagaattcctccagctgatgccattttgttgaaggtaaagt |
161 |
Q |
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|||||||||||||||||| | |||||| ||| | ||||| ||| ||||||||||||||| |
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| T |
31734861 |
gttggtggagacatgtttaaagaaattccgccaaccgatgcaattctgttgaaggtaaagt |
31734921 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 1 - 164
Target Start/End: Original strand, 31702921 - 31703084
Alignment:
| Q |
1 |
ggcaaaggctcttgccaaatcattcccacaaatggaccgcactgtgtttgatcttccacatgttgttgatggcttgcaaggagttgataacttaaactat |
100 |
Q |
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||||||||| ||||| |||||||||||||||||||| | ||| |||||||| |||||||||||||||||||||||||| ||| || |||||||| |
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| T |
31702921 |
ggcaaaggcccttgctaaatcattcccacaaatggagtttagtgtatttgatctaccacatgttgttgatggcttgcaaggtagtgagaatctaaactat |
31703020 |
T |
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| Q |
101 |
gttggtggagacatgtttgagagaattcctccagctgatgccattttgttgaaggtaaagtgtt |
164 |
Q |
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| T |
31703021 |
gttggtggagacatgtttaaagaaattcctccaacagacgccattttgttgaaggtaaaatgtt |
31703084 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 47 - 121
Target Start/End: Original strand, 30570387 - 30570461
Alignment:
| Q |
47 |
tttgatcttccacatgttgttgatggcttgcaaggagttgataacttaaactatgttggtggagacatgtttgag |
121 |
Q |
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||||||||||||||||||||||||||||| |||||| ||| |||||||| |||||||| || |||||||||||| |
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| T |
30570387 |
tttgatcttccacatgttgttgatggcttacaaggaagtgaaaacttaaaatatgttggaggtgacatgtttgag |
30570461 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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