View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9308_low_24 (Length: 373)

Name: NF9308_low_24
Description: NF9308
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9308_low_24
NF9308_low_24
[»] chr8 (7 HSPs)
chr8 (1-138)||(4974928-4975065)
chr8 (1-138)||(15075731-15075868)
chr8 (1-135)||(2751921-2752054)
chr8 (11-138)||(9293316-9293443)
chr8 (11-132)||(25381035-25381154)
chr8 (13-138)||(25690469-25690592)
chr8 (78-122)||(20990363-20990407)
[»] chr2 (8 HSPs)
chr2 (1-138)||(30870588-30870725)
chr2 (11-138)||(8910313-8910440)
chr2 (1-138)||(26353987-26354123)
chr2 (11-134)||(17353675-17353799)
chr2 (11-97)||(29453935-29454021)
chr2 (1-138)||(34213779-34213915)
chr2 (11-138)||(41342119-41342247)
chr2 (16-138)||(21430921-21431046)
[»] chr1 (6 HSPs)
chr1 (1-147)||(25878295-25878441)
chr1 (3-135)||(10918128-10918260)
chr1 (12-126)||(28007068-28007182)
chr1 (11-136)||(33372704-33372822)
chr1 (1-141)||(45438563-45438704)
chr1 (1-106)||(32992005-32992110)
[»] chr3 (6 HSPs)
chr3 (1-138)||(22603980-22604117)
chr3 (11-138)||(11559330-11559457)
chr3 (11-138)||(11568599-11568726)
chr3 (1-132)||(54377879-54378010)
chr3 (11-142)||(50093121-50093252)
chr3 (78-118)||(41946892-41946933)
[»] chr5 (7 HSPs)
chr5 (11-138)||(37192856-37192983)
chr5 (3-138)||(26708828-26708963)
chr5 (3-138)||(26978562-26978697)
chr5 (19-138)||(29068964-29069083)
chr5 (79-144)||(7031191-7031258)
chr5 (84-138)||(41250030-41250084)
chr5 (11-55)||(41249969-41250013)
[»] scaffold0092 (1 HSPs)
scaffold0092 (31-134)||(53325-53428)
[»] chr7 (5 HSPs)
chr7 (189-349)||(24259970-24260130)
chr7 (11-134)||(23428623-23428747)
chr7 (79-131)||(8544105-8544157)
chr7 (306-354)||(24260446-24260494)
chr7 (11-138)||(42594030-42594156)
[»] chr4 (6 HSPs)
chr4 (11-125)||(17028437-17028552)
chr4 (1-134)||(9591988-9592122)
chr4 (1-60)||(22434065-22434124)
chr4 (48-132)||(19898427-19898512)
chr4 (31-134)||(56490537-56490642)
chr4 (74-118)||(22434125-22434169)
[»] chr6 (2 HSPs)
chr6 (5-138)||(11082800-11082934)
chr6 (16-132)||(291967-292084)
[»] scaffold0474 (1 HSPs)
scaffold0474 (309-356)||(8730-8777)


Alignment Details
Target: chr8 (Bit Score: 130; Significance: 3e-67; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 130; E-Value: 3e-67
Query Start/End: Original strand, 1 - 138
Target Start/End: Complemental strand, 4975065 - 4974928
Alignment:
Q  1 tattttaaacaaatcaacattttaggataattataaatataactggtataattttcgcacgcttacgcatgtataatgttttatataaatttttatgata 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||    
T  4975065 tattttaaacaaatcaacattttaggataattataaatataactggtataatttttgcacgcttacgcgtgtataatgttttatataaatttttatgata 4974966  T
Q  101 taacttgaccccacttatcaaaatttctggatccgtca 138  Q
    ||||||||||||||||||||||||||||||||||||||    
T  4974965 taacttgaccccacttatcaaaatttctggatccgtca 4974928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 1 - 138
Target Start/End: Original strand, 15075731 - 15075868
Alignment:
Q  1 tattttaaacaaatcaacattttaggataattataaatataactggtataattttcgcacgcttacgcatgtataatgttttatataaatttttatgata 100  Q
    |||||||||||||||||||||||||| ||||||||||||||||| |||||||||| |||||||||||| |||||||||||||||||||||||||||| ||    
T  15075731 tattttaaacaaatcaacattttagggtaattataaatataactagtataatttttgcacgcttacgcgtgtataatgttttatataaatttttatgtta 15075830  T
Q  101 taacttgaccccacttatcaaaatttctggatccgtca 138  Q
    |||||||| |||||||||||||||||||| ||||||||    
T  15075831 taacttgatcccacttatcaaaatttctgaatccgtca 15075868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 1 - 135
Target Start/End: Original strand, 2751921 - 2752054
Alignment:
Q  1 tattttaaacaaatcaacattttaggataattataaatataactggtataattttcgcacgcttacgcatgtataatgttttatataaatttttatgata 100  Q
    ||||||||||| |||||||||||||| ||| ||||||||||||| |||||||||||||||||||||||||||||||  ||||||||||||||||||||||    
T  2751921 tattttaaacatatcaacattttagggtaaatataaatataacttgtataattttcgcacgcttacgcatgtataaaattttatataaatttttatgata 2752020  T
Q  101 taacttgaccccacttatcaaaatttctggatccg 135  Q
    ||||||||||||||||||  |||||||| ||||||    
T  2752021 taacttgaccccacttat-taaatttctcgatccg 2752054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 11 - 138
Target Start/End: Complemental strand, 9293443 - 9293316
Alignment:
Q  11 aaatcaacattttaggataattataaatataactggtataattttcgcacgcttacgcatgtataatgttttatataaatttttatgatataacttgacc 110  Q
    ||||||||||||||||  ||||||||||||| || ||||||||||||||||||||||| | |||||  ||||||||||||||||||||||||||||||||    
T  9293443 aaatcaacattttagggcaattataaatatagcttgtataattttcgcacgcttacgcgtttataaaattttatataaatttttatgatataacttgacc 9293344  T
Q  111 ccacttatcaaaatttctggatccgtca 138  Q
     | ||||| ||||||| |||||||||||    
T  9293343 tcccttattaaaatttttggatccgtca 9293316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 11 - 132
Target Start/End: Original strand, 25381035 - 25381154
Alignment:
Q  11 aaatcaacattttaggataattataaatataactggtataattttcgcacgcttacgcatgtataatgttttatataaatttttatgatataac-ttgac 109  Q
    |||||||||||||| |  ||||||||||||||||  |||||||||||||||||||||  | ||||| ||||||||||||||||||| ||||||| |||||    
T  25381035 aaatcaacattttatggcaattataaatataacttatataattttcgcacgcttacgagtttataaagttttatataaatttttataatataactttgac 25381134  T
Q  110 cccacttatcaaaatttctggat 132  Q
    | |||||   |||||||||||||    
T  25381135 cacactt---aaaatttctggat 25381154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 13 - 138
Target Start/End: Original strand, 25690469 - 25690592
Alignment:
Q  13 atcaacattttaggataattataaatataactggtataattttcgcacgcttacgcatgtataatgttttatataaatttttatgatataa-cttgaccc 111  Q
    |||||||||||| |  |||||||||||||||| |||||||||||||||||||| |  | ||||| ||||||||| || |||||||||||||  ||||||     
T  25690469 atcaacattttatggcaattataaatataacttgtataattttcgcacgcttatgagtttataaagttttatattaaattttatgatataattttgaccg 25690568  T
Q  112 cacttatcaaaatttctggatccgtca 138  Q
    ||   || |||||||||||||||||||    
T  25690569 ca---attaaaatttctggatccgtca 25690592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 78 - 122
Target Start/End: Complemental strand, 20990407 - 20990363
Alignment:
Q  78 gttttatataaatttttatgatataacttgaccccacttatcaaa 122  Q
    ||||||||||||||||||||||||||||| |||||||||||||||    
T  20990407 gttttatataaatttttatgatataacttaaccccacttatcaaa 20990363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 126; Significance: 7e-65; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 126; E-Value: 7e-65
Query Start/End: Original strand, 1 - 138
Target Start/End: Original strand, 30870588 - 30870725
Alignment:
Q  1 tattttaaacaaatcaacattttaggataattataaatataactggtataattttcgcacgcttacgcatgtataatgttttatataaatttttatgata 100  Q
    |||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  30870588 tattttaaacaaatcaacattttagggtaattataaatataactagtataattttcgcacgcttacgcttgtataatgttttatataaatttttatgata 30870687  T
Q  101 taacttgaccccacttatcaaaatttctggatccgtca 138  Q
    ||||||||||||||||||||||||||||||||||||||    
T  30870688 taacttgaccccacttatcaaaatttctggatccgtca 30870725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 11 - 138
Target Start/End: Original strand, 8910313 - 8910440
Alignment:
Q  11 aaatcaacattttaggataattataaatataactggtataattttcgcacgcttacgcatgtataatgttttatataaatttttatgatataacttgacc 110  Q
    |||| |||||||||||  |||||||||||||||| ||||||||||||||||||||||  | |||||  |||||||||| ||||||||||||||||| |||    
T  8910313 aaattaacattttagggcaattataaatataacttgtataattttcgcacgcttacgtgtttataaaattttatataattttttatgatataacttaacc 8910412  T
Q  111 ccacttatcaaaatttctggatccgtca 138  Q
    |||||||| ||||||| |||||||||||    
T  8910413 ccacttattaaaatttttggatccgtca 8910440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 1 - 138
Target Start/End: Original strand, 26353987 - 26354123
Alignment:
Q  1 tattttaaacaaatcaacattttaggataattataaatataactggtataattttcgcacgcttacgcatgtataatgttttatataaatttttatgata 100  Q
    |||||| || || ||||||||||||||||||||||||||| ||| |||||||||||||||||||| |  | ||||| ||||||||| |||||||||||||    
T  26353987 tatttttaaaaattcaacattttaggataattataaatatgacttgtataattttcgcacgcttatgtgtttataaggttttatat-aatttttatgata 26354085  T
Q  101 taacttgaccccacttatcaaaatttctggatccgtca 138  Q
    ||| |||||  || |||| ||||||| |||||| ||||    
T  26354086 taatttgacatcatttattaaaatttttggatctgtca 26354123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 11 - 134
Target Start/End: Complemental strand, 17353799 - 17353675
Alignment:
Q  11 aaatcaacattttaggataattataaatataactggtataattttcgcacgcttacgcatgtataatgttttatataaatttttatgatataac-ttgac 109  Q
    |||||||||||||||   ||||||||| |||||   || |||||| |||||| ||| | | ||||  ||||||||||||||||||||||||||| |||||    
T  17353799 aaatcaacattttagagcaattataaacataacctatacaatttttgcacgcatacacgtttatatagttttatataaatttttatgatataactttgac 17353700  T
Q  110 cccacttatcaaaatttctggatcc 134  Q
    ||||||||| ||||||| |||||||    
T  17353699 cccacttattaaaatttatggatcc 17353675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 11 - 97
Target Start/End: Complemental strand, 29454021 - 29453935
Alignment:
Q  11 aaatcaacattttaggataattataaatataactggtataattttcgcacgcttacgcatgtataatgttttatataaatttttatg 97  Q
    ||||||| |||||| |  |||||||||||||||| |||||||||| ||||| |||||||| |||||  |||||||||||||||||||    
T  29454021 aaatcaatattttaaggcaattataaatataacttgtataatttttgcacgtttacgcatttataaaattttatataaatttttatg 29453935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 1 - 138
Target Start/End: Complemental strand, 34213915 - 34213779
Alignment:
Q  1 tattttaaacaaatcaacattttaggataattataaatataactggtataattttcgcacgcttacgcatgtataatgttttatataaatttttatgata 100  Q
    ||||||||| ||||||||||||||    ||||||||| ||||||   |||||||| ||||||||| |||| ||||  |||| ||||||||||||||||||    
T  34213915 tattttaaa-aaatcaacattttaaagcaattataaacataactta-ataatttttgcacgcttatgcatttatatagtttgatataaatttttatgata 34213818  T
Q  101 taa-cttgaccccacttatcaaaatttctggatccgtca 138  Q
    |||  ||| | | |||||||||||||||| |||| ||||    
T  34213817 taattttgtctctacttatcaaaatttcttgatctgtca 34213779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 11 - 138
Target Start/End: Original strand, 41342119 - 41342247
Alignment:
Q  11 aaatcaacattttaggataattataaatataactggtataattttcgcacgcttacgcatgtataatgttttatataaatttttatgatataac-ttgac 109  Q
    ||||||||||||||    ||||||||| |||||   |||||||||  ||||||||| | | ||||  ||||||||||||||||||||||||||| |||||    
T  41342119 aaatcaacattttaaagcaattataaacataacatatataatttttacacgcttacacgtttatatagttttatataaatttttatgatataactttgac 41342218  T
Q  110 cccacttatcaaaatttctggatccgtca 138  Q
    | || |||| ||| ||| ||||| |||||    
T  41342219 ctcagttattaaattttttggattcgtca 41342247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 16 - 138
Target Start/End: Original strand, 21430921 - 21431046
Alignment:
Q  16 aacattttaggataattataaatataactggtataattttcgcacgcttacgcatgtataatgttttata--taaatttttatgatataac-ttgacccc 112  Q
    ||||||||||   ||||||||| ||||||  ||| ||||| |||| ||||||| | ||||  | ||||||  ||||||||||||||||||| ||||| ||    
T  21430921 aacattttagagcaattataaacataacttatattatttttgcacacttacgcgtttatatagctttatatataaatttttatgatataactttgactcc 21431020  T
Q  113 acttatcaaaatttctggatccgtca 138  Q
    |||||||| ||||   ||||||||||    
T  21431021 acttatcagaattctaggatccgtca 21431046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 123; Significance: 4e-63; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 123; E-Value: 4e-63
Query Start/End: Original strand, 1 - 147
Target Start/End: Complemental strand, 25878441 - 25878295
Alignment:
Q  1 tattttaaacaaatcaacattttaggataattataaatataactggtataattttcgcacgcttacgcatgtataatgttttatataaatttttatgata 100  Q
    |||||||||||||||||||||||||| ||||||||||||||| |||||||||||| |||||||||||| |||||||||||||||||||||||||||||||    
T  25878441 tattttaaacaaatcaacattttagggtaattataaatataaatggtataatttttgcacgcttacgcgtgtataatgttttatataaatttttatgata 25878342  T
Q  101 taacttgaccccacttatcaaaatttctggatccgtcagtgcttcta 147  Q
    |||||||||||||||||||||||||||||||||||||| ||| ||||    
T  25878341 taacttgaccccacttatcaaaatttctggatccgtcactgcctcta 25878295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 89; E-Value: 8e-43
Query Start/End: Original strand, 3 - 135
Target Start/End: Original strand, 10918128 - 10918260
Alignment:
Q  3 ttttaaacaaatcaacattttaggataattataaatataactggtataattttcgcacgcttacgcatgtataatgttttatataaatttttatgatata 102  Q
    ||||||| |||||||||||||||   |||||||||||||||| ||||||||||||||| ||||||| | ||||| |||||||||||||||| ||||||||    
T  10918128 ttttaaaaaaatcaacattttagagcaattataaatataacttgtataattttcgcacacttacgcgtttataaagttttatataaattttcatgatata 10918227  T
Q  103 acttgaccccacttatcaaaatttctggatccg 135  Q
    |||||||||||||||| ||||||||||||||||    
T  10918228 acttgaccccacttattaaaatttctggatccg 10918260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 12 - 126
Target Start/End: Complemental strand, 28007182 - 28007068
Alignment:
Q  12 aatcaacattttaggataattataaatataactggtataattttcgcacgcttacgcatgtataatgttttatataaatttttatgatataacttgaccc 111  Q
    ||||||||||||||   ||||||||||||||||  ||||||||||||| ||||||| || |||||  ||||||||| ||||||||||||||||||||||     
T  28007182 aatcaacattttagagcaattataaatataacttatataattttcgcatgcttacgtatttataaaattttatatatatttttatgatataacttgacct 28007083  T
Q  112 cacttatcaaaattt 126  Q
    ||||||| |||||||    
T  28007082 cacttattaaaattt 28007068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 11 - 136
Target Start/End: Original strand, 33372704 - 33372822
Alignment:
Q  11 aaatcaacattttaggataattataaatataactggtataattttcgcacgcttacgcatgtataatgttttatataaatttttatgatataacttgacc 110  Q
    |||||||||||| |||  |||||||||||||| | |||||||||||||||||      || || || |||||||||||||||||||||||||||||||||    
T  33372704 aaatcaacattt-agggcaattataaatataatttgtataattttcgcacgc------atttagaaagttttatataaatttttatgatataacttgacc 33372796  T
Q  111 ccacttatcaaaatttctggatccgt 136  Q
    |||||||| ||||||| | |||||||    
T  33372797 ccacttattaaaatttttagatccgt 33372822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 1 - 141
Target Start/End: Original strand, 45438563 - 45438704
Alignment:
Q  1 tattttaaacaaatcaacattttaggataattataaatataactggtataattttcgcacgcttacgcatgtataatgttttatataaatttttatgata 100  Q
    |||||| || ||||||| ||||| |  |||||||||| |||| |  |||||||||   || ||||||| | ||||   ||||| ||||| ||||||||||    
T  45438563 tatttttaaaaaatcaatatttttgagtaattataaacataatttatataatttttatacacttacgcgtttatataattttaaataaaattttatgata 45438662  T
Q  101 taactt-gaccccacttatcaaaatttctggatccgtcagtg 141  Q
    |||||| |||| |||||||  | |||||||||||||||||||    
T  45438663 taactttgacctcacttatttacatttctggatccgtcagtg 45438704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 106
Target Start/End: Original strand, 32992005 - 32992110
Alignment:
Q  1 tattttaaacaaatcaacattttaggataattataaatataactggtataattttcgcacgcttacgcatgtataatgttttatataaatttttatgata 100  Q
    ||||||||| ||||||| ||||||    ||||||||   |||||  |||||||||  || ||||||| || ||||   ||||||||||||||||||||||    
T  32992005 tattttaaataaatcaaaattttaaagaaattataatcttaacttatataattttttcatgcttacgtatttatatatttttatataaatttttatgata 32992104  T
Q  101 taactt 106  Q
    ||||||    
T  32992105 taactt 32992110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 122; Significance: 2e-62; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 1 - 138
Target Start/End: Complemental strand, 22604117 - 22603980
Alignment:
Q  1 tattttaaacaaatcaacattttaggataattataaatataactggtataattttcgcacgcttacgcatgtataatgttttatataaatttttatgata 100  Q
    |||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  22604117 tattttaaacaaatcaacattttagggtaattataaatataattggtataattttcgcacgcttacgcgtgtataatgttttatataaatttttatgata 22604018  T
Q  101 taacttgaccccacttatcaaaatttctggatccgtca 138  Q
    |||||||||| |||||||||||||||||||||||||||    
T  22604017 taacttgacctcacttatcaaaatttctggatccgtca 22603980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 11 - 138
Target Start/End: Complemental strand, 11559457 - 11559330
Alignment:
Q  11 aaatcaacattttaggataattataaatataactggtataattttcgcacgcttacgcatgtataatgttttatataaatttttatgatataacttgacc 110  Q
    ||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||| | ||||| ||||||||||||||||||||||||||||||||     
T  11559457 aaatcaacattttaggacaattataaatataacttgtataattttcgcacgcttacgcgtttataaagttttatataaatttttatgatataacttgact 11559358  T
Q  111 ccacttatcaaaatttctggatccgtca 138  Q
     ||||||| |||||||||||| ||||||    
T  11559357 gcacttattaaaatttctggacccgtca 11559330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 11 - 138
Target Start/End: Complemental strand, 11568726 - 11568599
Alignment:
Q  11 aaatcaacattttaggataattataaatataactggtataattttcgcacgcttacgcatgtataatgttttatataaatttttatgatataacttgacc 110  Q
    ||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||| | ||||| ||||||||||||||||||||||||||||||||     
T  11568726 aaatcaacattttaggacaattataaatataacttgtataattttcgcacgcttacgcgtttataaagttttatataaatttttatgatataacttgact 11568627  T
Q  111 ccacttatcaaaatttctggatccgtca 138  Q
     ||||||| |||||||||||| ||||||    
T  11568626 gcacttattaaaatttctggacccgtca 11568599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 1 - 132
Target Start/End: Complemental strand, 54378010 - 54377879
Alignment:
Q  1 tattttaaacaaatcaacattttaggataattataaatataactggtataattttcgcacgcttacgcatgtataatgttttatataaatttttatgata 100  Q
    |||||| || ||||||||||||||||  ||||||| |||||||| |||||| |||| ||||||||| ||| ||||| |||||||||||||||||||||||    
T  54378010 tatttttaaaaaatcaacattttagggcaattatatatataacttgtataactttcacacgcttacacatttataaagttttatataaatttttatgata 54377911  T
Q  101 taacttgaccccacttatcaaaatttctggat 132  Q
    |||||||||||||||||| ||||||| |||||    
T  54377910 taacttgaccccacttattaaaatttatggat 54377879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 11 - 142
Target Start/End: Complemental strand, 50093252 - 50093121
Alignment:
Q  11 aaatcaacattttaggataattataaatataactggtataattttcgcacgcttacgcatgtataatgttttatataaatttttatgatataacttgacc 110  Q
    ||||||||||||||||| |||| ||| |||||||  |||||||||||||||||||||| | |||||  ||| ||||||||||||||||||||| ||||||    
T  50093252 aaatcaacattttaggacaattgtaagtataacttatataattttcgcacgcttacgcgtttataaaatttaatataaatttttatgatataatttgacc 50093153  T
Q  111 ccacttatcaaaatttctggatccgtcagtgc 142  Q
    ||| |||| ||||||||| ||| |||| ||||    
T  50093152 ccatttattaaaatttctagattcgtcggtgc 50093121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 78 - 118
Target Start/End: Original strand, 41946892 - 41946933
Alignment:
Q  78 gttttatataaatttttatgatataac-ttgaccccacttat 118  Q
    ||||||||||||||||||||||||||| ||||||||||||||    
T  41946892 gttttatataaatttttatgatataactttgaccccacttat 41946933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 96; Significance: 5e-47; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 11 - 138
Target Start/End: Complemental strand, 37192983 - 37192856
Alignment:
Q  11 aaatcaacattttaggataattataaatataactggtataattttcgcacgcttacgcatgtataatgttttatataaatttttatgatataacttgacc 110  Q
    ||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||| | ||||| |||||||||||||||||||||||||||||||||    
T  37192983 aaatcaacattttaggacaattataaatataacttgtataattttcgcacgcttacgcgtttataaagttttatataaatttttatgatataacttgacc 37192884  T
Q  111 ccacttatcaaaatttctggatccgtca 138  Q
     ||||||| ||||||| |||||||||||    
T  37192883 tcacttattaaaatttatggatccgtca 37192856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 3 - 138
Target Start/End: Original strand, 26708828 - 26708963
Alignment:
Q  3 ttttaaacaaatcaacattttaggataattataaatataactggtataattttcgcacgcttacgcatgtataatgttttatataaatttttatgatata 102  Q
    ||||||| ||||||||||||||||  |||||||||||||||| |||||||||||||| |||||| | | ||||| |||||||||||||||||||||||||    
T  26708828 ttttaaaaaaatcaacattttagggcaattataaatataacttgtataattttcgcaagcttacacgtttataaagttttatataaatttttatgatata 26708927  T
Q  103 acttgaccccacttatcaaaatttctggatccgtca 138  Q
    |||||||||||||||| ||||||| |||||||||||    
T  26708928 acttgaccccacttattaaaatttttggatccgtca 26708963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 3 - 138
Target Start/End: Original strand, 26978562 - 26978697
Alignment:
Q  3 ttttaaacaaatcaacattttaggataattataaatataactggtataattttcgcacgcttacgcatgtataatgttttatataaatttttatgatata 102  Q
    ||||||| ||||||||||||||||  |||||||||||||||| |||||||||||||| |||||| | | ||||| |||||||||||||||||||||||||    
T  26978562 ttttaaaaaaatcaacattttagggcaattataaatataacttgtataattttcgcaagcttacacgtttataaagttttatataaatttttatgatata 26978661  T
Q  103 acttgaccccacttatcaaaatttctggatccgtca 138  Q
    |||||||||||||||| ||||||| |||||||||||    
T  26978662 acttgaccccacttattaaaatttttggatccgtca 26978697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 19 - 138
Target Start/End: Complemental strand, 29069083 - 29068964
Alignment:
Q  19 attttaggataattataaatataactggtataattttcgcacgcttacgcatgtataatgttttatataaatttttatgatataacttgaccccacttat 118  Q
    ||||||||  |||||||| ||||||| ||||||||||||||||||||||| | ||||| |||||||||||||||||||||||||| ||||||||||||||    
T  29069083 attttagggcaattataagtataacttgtataattttcgcacgcttacgcgtttataaagttttatataaatttttatgatataagttgaccccacttat 29068984  T
Q  119 caaaatttctggatccgtca 138  Q
     ||| ||| |||||||||||    
T  29068983 taaattttttggatccgtca 29068964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 79 - 144
Target Start/End: Complemental strand, 7031258 - 7031191
Alignment:
Q  79 ttttatataaatttttatgatataac-ttgacccc-acttatcaaaatttctggatccgtcagtgctt 144  Q
    |||||||||||||||||||||||||| |||||||| |||||||||  ||| ||||||||||| |||||    
T  7031258 ttttatataaatttttatgatataactttgacccctacttatcaatttttttggatccgtcactgctt 7031191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 84 - 138
Target Start/End: Original strand, 41250030 - 41250084
Alignment:
Q  84 tataaatttttatgatataacttgaccccacttatcaaaatttctggatccgtca 138  Q
    ||||||||||||||||||||||| |  |||||| | |||||||||||||||||||    
T  41250030 tataaatttttatgatataacttaattccacttgttaaaatttctggatccgtca 41250084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 11 - 55
Target Start/End: Original strand, 41249969 - 41250013
Alignment:
Q  11 aaatcaacattttaggataattataaatataactggtataatttt 55  Q
    ||||||||| |||| || |||||||||||||||| ||||||||||    
T  41249969 aaatcaacaatttaagacaattataaatataacttgtataatttt 41250013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0092 (Bit Score: 80; Significance: 2e-37; HSPs: 1)
Name: scaffold0092
Description:

Target: scaffold0092; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 31 - 134
Target Start/End: Complemental strand, 53428 - 53325
Alignment:
Q  31 ttataaatataactggtataattttcgcacgcttacgcatgtataatgttttatataaatttttatgatataacttgaccccacttatcaaaatttctgg 130  Q
    |||||||||||||| ||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||| ||||||| ||||||||||     
T  53428 ttataaatataacttgtataattttcgcacgcttacgcatttataaagttttatataaatttttatgatataacttgacctcacttattaaaatttctga 53329  T
Q  131 atcc 134  Q
    ||||    
T  53328 atcc 53325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 73; Significance: 3e-33; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 189 - 349
Target Start/End: Original strand, 24259970 - 24260130
Alignment:
Q  189 tactcaccactaatatctaacgatccttccaagttattgtaactcaagccaagagatctgagacgtggaggagcatttatggatgaaatattattgttgc 288  Q
    ||||||||||||||||| | |||||| | |||||| |||||||| ||| |||||||| ||||||||||| || |||||| ||||||||   |||||||||    
T  24259970 tactcaccactaatatcaagcgatccattcaagttgttgtaacttaagtcaagagatttgagacgtggaagaccatttagggatgaaaatatattgttgc 24260069  T
Q  289 ttaaaccgttgtaacccaagtcaaggatctccaaagacctcagttttgatatatctagcaa 349  Q
     ||||  |||  ||   ||||||||||||||||||||||||||||||||||||||||||||    
T  24260070 ctaaattgttccaagataagtcaaggatctccaaagacctcagttttgatatatctagcaa 24260130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 11 - 134
Target Start/End: Complemental strand, 23428747 - 23428623
Alignment:
Q  11 aaatcaacattttaggataattataaatataactggtataattttcgcacgcttacgcatgtataatgttttatataaatttttatgatataac-ttgac 109  Q
    ||||||||||||||    ||||||||| ||||||  ||||||||| ||| |||||||||| ||||   |||||||||||||||||||||||||| |||||    
T  23428747 aaatcaacattttaaagcaattataaacataacttatataatttttgcatgcttacgcatttatataattttatataaatttttatgatataactttgac 23428648  T
Q  110 cccacttatcaaaatttctggatcc 134  Q
    ||||||||| |||||| || |||||    
T  23428647 cccacttattaaaattcctcgatcc 23428623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 79 - 131
Target Start/End: Original strand, 8544105 - 8544157
Alignment:
Q  79 ttttatataaatttttatgatataacttgaccccacttatcaaaatttctgga 131  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  8544105 ttttatataaatttttatgatataacttgaccccacttattaaaatttctgga 8544157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 306 - 354
Target Start/End: Original strand, 24260446 - 24260494
Alignment:
Q  306 aagtcaaggatctccaaagacctcagttttgatatatctagcaatacat 354  Q
    |||||||||||||||||||||||||||||||||||||||| | ||||||    
T  24260446 aagtcaaggatctccaaagacctcagttttgatatatctatcgatacat 24260494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 11 - 138
Target Start/End: Complemental strand, 42594156 - 42594030
Alignment:
Q  11 aaatcaacattttaggataattataaatataactggtataattttcgcacgcttacgcatgtataatgttttatataaatttttatgatataac-ttgac 109  Q
    ||||||||||||||| | ||||||||| |||||   |||||||| |  | | |||||| | ||||  ||||||||||||| |||||| |||||| |||||    
T  42594156 aaatcaacattttagaacaattataaacataacctatataatttac--atgtttacgcgtttatatagttttatataaatctttatggtataactttgac 42594059  T
Q  110 cccacttatcaaaatttctggatccgtca 138  Q
    || |||||| |||||||||| || |||||    
T  42594058 cctacttattaaaatttctgaattcgtca 42594030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 60; Significance: 2e-25; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 11 - 125
Target Start/End: Original strand, 17028437 - 17028552
Alignment:
Q  11 aaatcaacattttaggataattataaatataactggtataattttcgcacgcttacgcatgtataatgttttatataaatttttatgatataac-ttgac 109  Q
    |||||||||||||| |  |||||||||||||| | ||||||||||||||| ||||||| | |||||  |||||||||||||||||||||||||| ||||     
T  17028437 aaatcaacattttatggcaattataaatataaattgtataattttcgcacacttacgcgtttataaaattttatataaatttttatgatataactttgat 17028536  T
Q  110 cccacttatcaaaatt 125  Q
    ||||||||| ||||||    
T  17028537 cccacttattaaaatt 17028552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 1 - 134
Target Start/End: Original strand, 9591988 - 9592122
Alignment:
Q  1 tattttaaacaaatcaacattttaggataattataaatataactggtataattttcgcacgcttacgcatgtataatgttttatataaatttttatgata 100  Q
    ||||||||| || |||||||||||    ||||||||||||||||   |||||||| ||||||||||   | ||| | |||||||||||||||||||||||    
T  9591988 tattttaaaaaactcaacattttatagcaattataaatataacttacataatttttgcacgcttacatgtttattaagttttatataaatttttatgata 9592087  T
Q  101 taa-cttgaccccacttatcaaaatttctggatcc 134  Q
    |||  |||||||||||||| ||||||| |||||||    
T  9592088 taattttgaccccacttattaaaatttttggatcc 9592122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 1 - 60
Target Start/End: Original strand, 22434065 - 22434124
Alignment:
Q  1 tattttaaacaaatcaacattttaggataattataaatataactggtataattttcgcac 60  Q
    |||||||||||||||||||||||||| ||||||||||||||| | ||||| |||||||||    
T  22434065 tattttaaacaaatcaacattttagggtaattataaatataaattgtatagttttcgcac 22434124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 48 - 132
Target Start/End: Original strand, 19898427 - 19898512
Alignment:
Q  48 ataattttcgcacgcttacgcatgtataatgttttatataaatttttatgatataacttga-ccccacttatcaaaatttctggat 132  Q
    |||||||| |||||||||||  | ||||   ||| ||||||| |||||||||||||  ||| |||||||||| |||||||||||||    
T  19898427 ataatttttgcacgcttacgtgtttatataatttcatataaaattttatgatataatctgaaccccacttattaaaatttctggat 19898512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 31 - 134
Target Start/End: Complemental strand, 56490642 - 56490537
Alignment:
Q  31 ttataaatataactggtataattttcgcacgcttacgcatgtataatgttttatataaatttttatgatataac-ttgaccccactta-tcaaaatttct 128  Q
    ||||||| ||||||  |||||||||  |||||||| |||  ||||   || ||||||||||||||||||||||| ||||| ||||||| | ||||||| |    
T  56490642 ttataaacataacttatataatttttacacgcttatgcaattatacaattctatataaatttttatgatataactttgactccacttatttaaaatttat 56490543  T
Q  129 ggatcc 134  Q
    ||||||    
T  56490542 ggatcc 56490537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 74 - 118
Target Start/End: Original strand, 22434125 - 22434169
Alignment:
Q  74 taatgttttatataaatttttatgatataacttgaccccacttat 118  Q
    ||| |||||||||||||||||||| || |||||||||||| ||||    
T  22434125 taaagttttatataaatttttatggtacaacttgaccccatttat 22434169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 55; Significance: 2e-22; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 5 - 138
Target Start/End: Complemental strand, 11082934 - 11082800
Alignment:
Q  5 ttaaacaaatcaacattttaggataattataaatataactggtataattttcgcacgcttacgcatgtataatgttttatataaatttttatgatataac 104  Q
    ||||| ||||||| |||||||   ||||||||||||||    ||||||||| ||||||||| |||| ||||   |||||||||||||||||||||||||     
T  11082934 ttaaaaaaatcaagattttagagcaattataaatataatctatataatttttgcacgcttatgcatttatataattttatataaatttttatgatataaa 11082835  T
Q  105 tt-gaccccacttatcaaaatttctggatccgtca 138  Q
    || |||| ||||||| |||||||||||||||||||    
T  11082834 ttcgacctcacttattaaaatttctggatccgtca 11082800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 16 - 132
Target Start/End: Complemental strand, 292084 - 291967
Alignment:
Q  16 aacattttaggataattataaatataactggtataattttcgcacgcttacgcatgtataatgttttatataaatttttatgatataac-ttgaccccac 114  Q
    ||||||||||   ||||||||| |||||   ||||||||| ||| |||||||||| ||||  ||||||||||||||||||||||||||| ||||||  ||    
T  292084 aacattttagagcaattataaacataacatatataatttttgcatgcttacgcatttatatagttttatataaatttttatgatataactttgaccttac 291985  T
Q  115 ttatcaaaatttctggat 132  Q
    |||| ||||||| |||||    
T  291984 ttattaaaatttttggat 291967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0474 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: scaffold0474
Description:

Target: scaffold0474; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 309 - 356
Target Start/End: Original strand, 8730 - 8777
Alignment:
Q  309 tcaaggatctccaaagacctcagttttgatatatctagcaatacataa 356  Q
    ||||||||||||| ||| || |||||||||||||||||||||| ||||    
T  8730 tcaaggatctccagagatctgagttttgatatatctagcaatatataa 8777  T

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