View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9308_low_25 (Length: 373)
Name: NF9308_low_25
Description: NF9308
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9308_low_25 |
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Alignment Details
Target: chr3 (Bit Score: 338; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 338; E-Value: 0
Query Start/End: Original strand, 17 - 362
Target Start/End: Complemental strand, 44966768 - 44966423
Alignment:
| Q |
17 |
agtatttactgcaagttttgatactgaatagtcagtaaaagtttgaggccaccctcctgttttccaacttccatcttctatttgttgtagaaaattattt |
116 |
Q |
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| T |
44966768 |
agtatttactgcaagttttgatactgaatagtcagtaaaagtttgaggccaccctcctgttttccaacttccatcttctatttgttgtagaaaattattt |
44966669 |
T |
|
| Q |
117 |
atagtttcatcaattagttcctctgaaagagattccacatcacttagtttctccctcaattcctcattttctattctctgtaacacaatcaagttatagt |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44966668 |
atagtttcatcaattagttcctctgaaagagattccacatcacttagtttctccctcaattcctcattttctattctctgtaacacaatcaagttatagt |
44966569 |
T |
|
| Q |
217 |
taatcagttttgcatttctcataatttgagaattaagagtgtacatacaaattcatcattgaaattgtaagttccgtccaatagtctcttgctaattggg |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
44966568 |
taatcagttttgcatttctcataatttgagaattaagagtgtacatacaaattcatcattgaaattgtaagttccgtccaatagtctcctgctaattggg |
44966469 |
T |
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| Q |
317 |
aaatatgtccctaaaattgtaaaatgtcattcaaaatgattcctat |
362 |
Q |
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| T |
44966468 |
aaatatgtccctaaaattataaaatgtcattcaaaatgattcctat |
44966423 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 310 - 354
Target Start/End: Complemental strand, 32244915 - 32244871
Alignment:
| Q |
310 |
aattgggaaatatgtccctaaaattgtaaaatgtcattcaaaatg |
354 |
Q |
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|||||| |||||| || | |||||||||||||||||||||||||| |
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| T |
32244915 |
aattggcaaatatatctccaaaattgtaaaatgtcattcaaaatg |
32244871 |
T |
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