View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9308_low_26 (Length: 366)
Name: NF9308_low_26
Description: NF9308
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9308_low_26 |
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| [»] chr8 (3 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 342; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 342; E-Value: 0
Query Start/End: Original strand, 13 - 366
Target Start/End: Complemental strand, 34519777 - 34519424
Alignment:
| Q |
13 |
caaaggaccaatttcttctaaaagcataatcttgaaaatgaataaaaccagggaatgaattcatcaccaccaagaaacagggcccagaccttcatgggct |
112 |
Q |
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| T |
34519777 |
caaaggaccaatttcttctaaaagcacaatcttgaaaatgaataaaaccagggaatgaattcatcaccaccaagaaacagggcccagaccttcatgagct |
34519678 |
T |
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| Q |
113 |
aatgatccctgtaaaatagagagacattatatcaatcttccatcaatgttcaatgcttgtttattaggattttaatctatcttctatacaaaacatattg |
212 |
Q |
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| T |
34519677 |
aatgatccctgtaaaatagagagacattatatcaatcttccatcaatgttcaatgcttgtttattaggattttaatctatcttctatacaaaacatattg |
34519578 |
T |
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| Q |
213 |
atacggcaagtagttcaaacacattttctttaatcggtttgtttatgatgcaattggtgagatttcggttcgtaatcaaaagatatcttatcataattac |
312 |
Q |
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| T |
34519577 |
atatggcaagtagttcaaacacattttctttaatcggtttgtttatgatgcaattggtgagatttcggttcgtaatcaaaagatatcttatcataattac |
34519478 |
T |
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| Q |
313 |
aacttctttaaaatatggaagacataaaaacataggagaaggggaaacaatgtg |
366 |
Q |
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| T |
34519477 |
aacttctttaaaatatggaagacataaaaacataggagaaggggaaacaatgtg |
34519424 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 34 - 132
Target Start/End: Complemental strand, 30739961 - 30739863
Alignment:
| Q |
34 |
aagcataatcttgaaaatgaataaaaccagggaatgaattcatcaccaccaagaaacagggcccagaccttcatgggctaatgatccctgtaaaataga |
132 |
Q |
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| T |
30739961 |
aagcgtaatcttgaaaatgaataaaagctgggaatgaattcattgccaccaagaaacaggtcccaaaccttcatgatataatgatccctgtaaaataga |
30739863 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 200 - 366
Target Start/End: Complemental strand, 30739778 - 30739614
Alignment:
| Q |
200 |
acaaaacatattgatacggcaagtagttcaaacacattttctttaatcggtttgtttatgatgcaattggtgagatttcggttcgtaatcaaaagatatc |
299 |
Q |
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|||||| ||||||||| |||||||| |||| |||| |||||| ||| ||||| ||||||||||||| |||||||||||||| ||||| || |||| |
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| T |
30739778 |
acaaaagatattgatatggcaagtaattcatacacgatttcttgaattggtttttttatgatgcaatcaatgagatttcggttcataatc--aacatata |
30739681 |
T |
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| Q |
300 |
ttatcataattacaacttctttaaaatatggaagacataaaaacataggagaaggggaaacaatgtg |
366 |
Q |
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| T |
30739680 |
agattataattatgactgctttaaaatatgagagacataaaaacataggagaagaggaaacgatgtg |
30739614 |
T |
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