View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9308_low_28 (Length: 365)
Name: NF9308_low_28
Description: NF9308
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9308_low_28 |
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Alignment Details
Target: chr1 (Bit Score: 260; Significance: 1e-145; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 260; E-Value: 1e-145
Query Start/End: Original strand, 1 - 349
Target Start/End: Original strand, 5035913 - 5036260
Alignment:
| Q |
1 |
atgtgaataagaataattactatgtcttttgctctaactcaagaactgtaacgagaataaactctagataaacnnnnnnnnnnnnnggttaaaataaact |
100 |
Q |
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| T |
5035913 |
atgtgaataagaataattactatgtcttttgctctaactcaagaactgtaacgagaataaagtctagataaacttcttttttttttggttaaaataaact |
5036012 |
T |
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| Q |
101 |
ctagataattgatactatgattgaaacaactatttactattttattttaattatattaatataatctagcacatgacaaaataatcatattgatgtctta |
200 |
Q |
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| T |
5036013 |
ctagataattgatactatgattgaaacaactatttactattttattttaattatattaatataatctagcacatgacaaaataatcatattgatgtctta |
5036112 |
T |
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| Q |
201 |
aaaagtgtaagaattgaggatagaatgatggctccaatactaaagcaactcatgactaaaaatgagtgattttagtctttttataaagatttaaaaacac |
300 |
Q |
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|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
5036113 |
aaaagtgtaagaattgaggatagagtgatggctccaatactaaagcaactcatgactaaaaatgagtgattttagtctttttataaagattaaaaaacac |
5036212 |
T |
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| Q |
301 |
tannnnnnnctttgtcgtcgttaatttaactaaattaatagggacacat |
349 |
Q |
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|| |||||||| |||||||||||||||||| ||||| |||||| |
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| T |
5036213 |
ta-ttttttctttgtcgccgttaatttaactaaattgataggaacacat |
5036260 |
T |
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