View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9308_low_29 (Length: 353)
Name: NF9308_low_29
Description: NF9308
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9308_low_29 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 329; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 329; E-Value: 0
Query Start/End: Original strand, 1 - 337
Target Start/End: Complemental strand, 41418150 - 41417814
Alignment:
| Q |
1 |
tctggtatctgcagtcaacaacaacaaaaaagacaagattgcagtagacgccattacgggggctgcaattgccactgctgcagaattcataaatcacttt |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41418150 |
tctggtatctgcagtcaacaacaacaaaaaagacaagattgcagtagacgccattacaggggctgcaattgccactgctgcagaattcataaatcacttt |
41418051 |
T |
|
| Q |
101 |
acctgaatgaactgaattggatgtgtttttgctattattgcatgttagaaaaggggttgaattgtattactattgaccatttaaatcattttctaaccag |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41418050 |
acctgaatgaactgaattggatgtgtttttgctattattgcatgttagaaaaggggttgaattgtattactattgaccatttaaatcattttctaaccag |
41417951 |
T |
|
| Q |
201 |
attgttcaatcctttgtttaaaacaaactttatgagggtaattattttgaaagaaaataaagtaaacactaaaaagcaaatgagaagggtaaagaagaat |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41417950 |
attgttcaatcctttgtttaaaacaaactttatgagggtaattattttgaaagaaaataaagtaaacactaaaaagcaaatgagaagggtaaagaagaat |
41417851 |
T |
|
| Q |
301 |
gcaagtatatttttgtaatagtttacaacatgttgct |
337 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||| |
|
|
| T |
41417850 |
gcaagtatatttttataatagtttacaacatgttgct |
41417814 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 90
Target Start/End: Complemental strand, 41412580 - 41412491
Alignment:
| Q |
1 |
tctggtatctgcagtcaacaacaacaaaaaagacaagattgcagtagacgccattacgggggctgcaattgccactgctgcagaattcat |
90 |
Q |
| |
|
|||||||||||||| || |||| | || ||||||||||| | ||| |||||||| |||||||||||||| ||||||||||||||||| |
|
|
| T |
41412580 |
tctggtatctgcagccagcaacgagaaggcagacaagattgtaataggtgccattacaggggctgcaattgcgactgctgcagaattcat |
41412491 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University