View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9308_low_3 (Length: 622)

Name: NF9308_low_3
Description: NF9308
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9308_low_3
NF9308_low_3
[»] chr5 (24 HSPs)
chr5 (1-282)||(10218137-10218419)
chr5 (450-604)||(11049718-11049879)
chr5 (322-584)||(10609932-10610194)
chr5 (257-404)||(11049560-11049722)
chr5 (321-410)||(10218450-10218539)
chr5 (334-604)||(10742439-10742709)
chr5 (323-567)||(10563266-10563510)
chr5 (380-576)||(10718681-10718877)
chr5 (375-508)||(10764875-10765008)
chr5 (21-218)||(10603353-10603551)
chr5 (10-161)||(10664558-10664710)
chr5 (323-504)||(10748741-10748922)
chr5 (99-171)||(10764622-10764694)
chr5 (18-298)||(10599611-10599889)
chr5 (18-304)||(10610227-10610511)
chr5 (1-147)||(10661476-10661623)
chr5 (1-66)||(10653590-10653655)
chr5 (18-169)||(10748423-10748575)
chr5 (10-148)||(7191675-7191814)
chr5 (19-149)||(10557589-10557720)
chr5 (24-144)||(10549467-10549588)
chr5 (451-554)||(10549045-10549148)
chr5 (257-306)||(10579522-10579571)
chr5 (257-306)||(10590072-10590121)
[»] chr6 (10 HSPs)
chr6 (376-567)||(12897804-12897995)
chr6 (323-581)||(12956303-12956561)
chr6 (376-581)||(12905411-12905617)
chr6 (323-577)||(12946870-12947124)
chr6 (323-483)||(12930599-12930759)
chr6 (8-66)||(12956834-12956892)
chr6 (10-168)||(12905840-12905999)
chr6 (11-149)||(12930948-12931087)
chr6 (11-46)||(12947417-12947452)
chr6 (521-567)||(12930515-12930561)
[»] chr2 (3 HSPs)
chr2 (376-567)||(17925185-17925376)
chr2 (99-168)||(17924893-17924962)
chr2 (10-66)||(17924803-17924859)
[»] chr3 (1 HSPs)
chr3 (257-306)||(31468804-31468853)


Alignment Details
Target: chr5 (Bit Score: 259; Significance: 1e-144; HSPs: 24)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 1 - 282
Target Start/End: Original strand, 10218137 - 10218419
Alignment:
Q  1 atagctcaataagttcagtggataaattgcctatgaaatttggcaagttgcctccaaaattgttattgtttatagaaagcacttgcaacttagtataatt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  10218137 atagctcaataagttcagtggataaattgcctatgaaatttggcaagttgcctccaaaattgttattgtttatagaaagcacttgcaacttagtacaatt 10218236  T
Q  101 -gtcaaagattttaaaaactccaaatcctttgttgaattgtcacctaaatagttgtattccaaatttagcaatagtagatcttttagccatcctagagtt 199  Q
     ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||    
T  10218237 tgtcaaagattttaaaaactccaaatcctttgttgaattgtcacctaaatagttgtattccaaacttagcaatagtagatcatttagccatcctagagtt 10218336  T
Q  200 ggaacttgtccaacaaaatagttttgaccgagatcaaatattgtaatgggggatgatgcatttgttatggaagtggggattgg 282  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  10218337 ggaacttgtccaacaaaatagttttgaccgagatcaaatattgtaatgggagatgatgcatttgttatggaagtggggattgg 10218419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 116; E-Value: 1e-58
Query Start/End: Original strand, 450 - 604
Target Start/End: Original strand, 11049718 - 11049879
Alignment:
Q  450 acaagcttttgaggtgacatatttcttgtggaatatctctttct-------aagttgttataagcaaatgaaaaatcggttaagcttgaaagattcccta 542  Q
    ||||||||||||||||||||||||||||||||||||||| ||||       |||||||||||  ||||||||||||||||||||||||||||||||||||    
T  11049718 acaagcttttgaggtgacatatttcttgtggaatatctccttctaagttctaagttgttatacacaaatgaaaaatcggttaagcttgaaagattcccta 11049817  T
Q  543 tgaatgaagggattcctccggttaatttatttttccaaatgggcaatgattgaagttttttc 604  Q
    ||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||    
T  11049818 tgaatgaagggattcctccagttaatttatttttccaaatggccaatgattgaagttttttc 11049879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 111; E-Value: 1e-55
Query Start/End: Original strand, 322 - 584
Target Start/End: Complemental strand, 10610194 - 10609932
Alignment:
Q  322 aaacatgttgggtggaagagagccataaaagttattcattgttagtgtgagctcaataagtgatgagatattgtaaaaacaagaaggaatcataccagac 421  Q
    |||||||||||||||||| ||||||| |||  ||||||| ||||||| ||| ||| |||||| |||||||||||||| ||||||||||||||||||||||    
T  10610194 aaacatgttgggtggaagtgagccattaaatctattcatggttagtgagagttcagtaagtgctgagatattgtaaagacaagaaggaatcataccagac 10610095  T
Q  422 aaattgttcacaccccgatttaaaattgacaagcttttgaggtgacatatttcttgtggaatatctctttctaagttgttataagcaaatgaaaaatcgg 521  Q
    |||| ||| ||||||  |  ||||  |  |||  |||||||  ||||| |||||||||||||||| | ||||||||||||  ||| || |||||||   |    
T  10610094 aaatagtttacacccataaataaacctctcaaatttttgagacgacatgtttcttgtggaatatccccttctaagttgtttgaagtaactgaaaaacgcg 10609995  T
Q  522 ttaagcttgaaagattccctatgaatgaagggattcctccggttaatttatttttccaaatgg 584  Q
    |||||| |||||||||||||| ||||||||| ||||||||||||||||| |||||||||||||    
T  10609994 ttaagcatgaaagattccctacgaatgaaggaattcctccggttaatttgtttttccaaatgg 10609932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 109; E-Value: 2e-54
Query Start/End: Original strand, 257 - 404
Target Start/End: Original strand, 11049560 - 11049722
Alignment:
Q  257 gcatttgttatggaagtggggattggacctgagaattgatttcccccaatcgcacaaaattggaga---------------aacatgttgggtggaagag 341  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||               |||||||||||||||||||    
T  11049560 gcatttgttatggaagtggggattggtcctgagaattgatttcccccaatcgcacaaaattggagattggggaaggcatgaaacatgttgggtggaagag 11049659  T
Q  342 agccataaaagttattcattgttagtgtgagctcaataagtgatgagatattgtaaaaacaag 404  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11049660 agccataaaagttattcattgttagtgtgagctcaataagtgatgagatattgtaaaaacaag 11049722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 321 - 410
Target Start/End: Original strand, 10218450 - 10218539
Alignment:
Q  321 gaaacatgttgggtggaagagagccataaaagttattcattgttagtgtgagctcaataagtgatgagatattgtaaaaacaagaaggaa 410  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10218450 gaaacatgttgggtggaagagagccataaaagttattcattgttagtgtgagctcaataagtgatgagatattgtaaaaacaagaaggaa 10218539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 334 - 604
Target Start/End: Original strand, 10742439 - 10742709
Alignment:
Q  334 tggaagagagccataaaagttattcattgttagtgtgagctcaataagtgatgagatattgtaaaaacaagaaggaatcataccagacaaattgttcaca 433  Q
    ||||||||||||||  |||||||||||   |||||  |||||| | ||| |||| |||||||||| ||||||||||| |||||||||||||| ||| |||    
T  10742439 tggaagagagccattgaagttattcatgactagtgaaagctcagtcagtaatgacatattgtaaatacaagaaggaaccataccagacaaatagtttaca 10742538  T
Q  434 ccccgatttaaaattgacaagcttttgaggtgacatatttcttgtggaatatctctttctaagttgttataagcaaatgaaaaatcggttaagcttgaaa 533  Q
    |||  || ||||  |  |||  |||| ||  |||||||||||||||||||||| | ||||||||||||  ||| ||  ||||||    |||| |||||||    
T  10742539 cccatatataaacctctcaaattttttagacgacatatttcttgtggaatatccccttctaagttgtttgaaggaaccgaaaaaagcattaaacttgaaa 10742638  T
Q  534 gattccctatgaatgaagggattcctccggttaatttatttttccaaatgggcaatgattgaagttttttc 604  Q
    ||||||||||| |||||| ||||||||| ||||| || || |||||||    |||||||||||||||||||    
T  10742639 gattccctatggatgaagagattcctccagttaaattgttattccaaacactcaatgattgaagttttttc 10742709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 323 - 567
Target Start/End: Complemental strand, 10563510 - 10563266
Alignment:
Q  323 aacatgttgggtggaagagagccataaaagttattcattgttagtgtgagctcaataagtgatgagatattgtaaaaacaagaaggaatcataccagaca 422  Q
    |||||||||| ||||||| |||||  ||||||||||||   ||||| ||||||||| |||||||| |||||||||| ||||| |||||||||||||||||    
T  10563510 aacatgttggatggaagatagccagtaaagttattcatgactagtgagagctcaattagtgatgacatattgtaaatacaaggaggaatcataccagaca 10563411  T
Q  423 aattgttcacaccccgatttaaaattgacaagcttttgaggtgacatatttcttgtggaatatctctttctaagttgttataagcaaatgaaaaatcggt 522  Q
    | |||||| |||||     ||||| || |||| |||||||| | |||| |||  |||||||||||| | |||| |||||| ||||| | | ||||         
T  10563410 atttgttctcacccaacaataaaagtgtcaagtttttgaggcggcatacttcacgtggaatatctcctcctaatttgttagaagcacacgtaaaacgcac 10563311  T
Q  523 taagcttgaaagattccctatgaatgaagggattcctccggttaa 567  Q
    ||||  |||||| ||||||||| |||||||||| ||||| |||||    
T  10563310 taaggatgaaaggttccctatggatgaagggatccctccagttaa 10563266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 380 - 576
Target Start/End: Original strand, 10718681 - 10718877
Alignment:
Q  380 agtgatgagatattgtaaaaacaagaaggaatcataccagacaaattgttcacaccccgatttaaaattgacaagcttttgaggtgacatatttcttgtg 479  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||   | |   || |||||||| |||| |||||||  ||||||||||| |||    
T  10718681 agtgatgagatattgtaaaaacaagaaggaattataccagacaaattgttaggatctgcatataaaattgtcaagtttttgagacgacatatttctggtg 10718780  T
Q  480 gaatatctctttctaagttgttataagcaaatgaaaaatcggttaagcttgaaagattccctatgaatgaagggattcctccggttaatttattttt 576  Q
    ||||| |||  |||||||||||||||| ||  ||||   |   ||| | ||||||||| || |||||||||||||||||||| ||||| || |||||    
T  10718781 gaataactccgtctaagttgttataaggaaccgaaagtccccataaacatgaaagatttcccatgaatgaagggattcctccagttaaattgttttt 10718877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 375 - 508
Target Start/End: Original strand, 10764875 - 10765008
Alignment:
Q  375 caataagtgatgagatattgtaaaaacaagaaggaatcataccagacaaattgttcacaccccgatttaaaattgacaagcttttgaggtgacatatttc 474  Q
    ||||||||||||||||||| |||| |||||| |||||| ||||||||||||||||| | ||   |  ||||| || |||| |||||||| ||||||||||    
T  10764875 caataagtgatgagatattataaagacaagatggaatcttaccagacaaattgttctcgccaaaagataaaaatgtcaagtttttgaggcgacatatttc 10764974  T
Q  475 ttgtggaatatctctttctaagttgttataagca 508  Q
    |||||||||||||| | |||| |||||| |||||    
T  10764975 ttgtggaatatctcctcctaatttgttagaagca 10765008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 21 - 218
Target Start/End: Complemental strand, 10603551 - 10603353
Alignment:
Q  21 gataaattgcctatgaaatttggcaagttgcctccaaaattgttattgtttatagaaagcacttgcaacttagtataatt-gtcaaagattttaaaaact 119  Q
    |||||||| |||||  ||||| ||||  | ||||||||||| |||||| ||| ||| ||   |||||||||| || | || ||||| |||||||||||||    
T  10603551 gataaatttcctatagaattttgcaaactacctccaaaattattattggttaaagatagtgattgcaacttactacagtttgtcaatgattttaaaaact 10603452  T
Q  120 ccaaatcctttgttgaattgtcacctaaatagttgtattccaaatttagcaatagtagatcttttagccatcctagagttggaacttgtccaacaaaat 218  Q
    |||||||  ||||||| ||||||||||||  |||   |||||||||||||||    ||||||||||||   |||||| |||||||||||||||||||||    
T  10603451 ccaaatcaattgttgagttgtcacctaaaatgttcatttccaaatttagcaaataaagatcttttagcttccctagacttggaacttgtccaacaaaat 10603353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 10 - 161
Target Start/End: Original strand, 10664558 - 10664710
Alignment:
Q  10 taagttcagtggataaattgcctatgaaatttggcaagttgcctccaaaattgttattgtttatagaaagcacttgcaacttagtataatt-gtcaaaga 108  Q
    |||||| | ||||||||||||||| |||||||| ||| ||| |||||||||| ||||||  |||||||| |||||| |   || || |||| ||||| ||    
T  10664558 taagttgattggataaattgcctacgaaatttgtcaatttggctccaaaattattattgcatatagaaatcacttgtagtctactacaattcgtcaagga 10664657  T
Q  109 ttttaaaaactccaaatcctttgttgaattgtcacctaaatagttgtattcca 161  Q
     ||||| |||||||||||||| ||||| ||||||||||||  |||| ||||||    
T  10664658 ctttaagaactccaaatccttagttgagttgtcacctaaactgttgaattcca 10664710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 323 - 504
Target Start/End: Original strand, 10748741 - 10748922
Alignment:
Q  323 aacatgttgggtggaagagagccataaaagttattcattgttagtgtgagctcaataagtgatgagatattgtaaaaacaagaaggaatcataccagaca 422  Q
    |||| ||||| |||||||||||||  ||| |||||    ||||||| ||| | | | |||||||||||||| |||| ||||||||||| |||||||||||    
T  10748741 aacaagttggatggaagagagccaataaatttattttcggttagtgagagttgagttagtgatgagatattataaagacaagaaggaaacataccagaca 10748840  T
Q  423 aattgttcacaccccgatttaaaattgacaagcttttgaggtgacatatttcttgtggaatatctctttctaagttgttata 504  Q
    |||||||| |||||  || |||  ||   | | ||||||| | |||||||||||||||||| ||||  | ||||||||||||    
T  10748841 aattgttctcacccacatgtaaccttctaatgtttttgagattacatatttcttgtggaatctctccctttaagttgttata 10748922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 99 - 171
Target Start/End: Original strand, 10764622 - 10764694
Alignment:
Q  99 ttgtcaaagattttaaaaactccaaatcctttgttgaattgtcacctaaatagttgtattccaaatttagcaa 171  Q
    |||||||| ||||||||||||| |||||| |||| |||||||||||||||| ||| | |||||||||||||||    
T  10764622 ttgtcaaatattttaaaaactctaaatccattgtggaattgtcacctaaattgttttcttccaaatttagcaa 10764694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 18 - 298
Target Start/End: Complemental strand, 10599889 - 10599611
Alignment:
Q  18 gtggataaattgcctatgaaatttggcaagttgcctccaaaattgttattgtttatagaaagcacttgcaacttagtataatt-gtcaaagattttaaaa 116  Q
    ||||||||||| || ||  ||||| ||||  | ||||||||||| |||| | ||| ||| |||  |||||||||| || | || ||||| || || ||||    
T  10599889 gtggataaatttccaatagaattttgcaaactacctccaaaattattataggttaaagatagcgattgcaacttactacagtttgtcaatgacttcaaaa 10599790  T
Q  117 actccaaatcctttgttgaattgtcacctaaatagttgtattccaaatttagcaatagtagatcttttagccatcctagagttggaacttgtccaacaaa 216  Q
    ||| ||||||| |||||||  |||||||||||  |||   |||||||||||||||    ||||||||||||   |||||| |||||||||||||||||||    
T  10599789 actgcaaatccattgttgagctgtcacctaaaatgttcatttccaaatttagcaaataaagatcttttagcttccctagacttggaacttgtccaacaaa 10599690  T
Q  217 atagttttgaccgagatcaaatattgtaatgggggatgatgcatttgttatggaagtggggattggacctgagaattgattt 298  Q
    || ||| | |||||  ||||||| ||| |     || || |||||||  || ||||| ||||||||||||||||||| ||||    
T  10599689 atggttgtcaccgatttcaaataatgtca---aagaagaagcatttgaaattgaagtagggattggacctgagaatttattt 10599611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 18 - 304
Target Start/End: Complemental strand, 10610511 - 10610227
Alignment:
Q  18 gtggataaattgcctatgaaatttggcaagttgcctccaaaattgttattgtttatagaaagcacttgcaacttagtataatt-gtcaaagattttaaaa 116  Q
    |||||||||||||| ||||||||||||||  | |||||||| || |||||   ||||||||||  ||  |  ||| || | || |||||| |||||||||    
T  10610511 gtggataaattgccaatgaaatttggcaaactacctccaaacttattattagatatagaaagcttttctagtttactacagtttgtcaaatattttaaaa 10610412  T
Q  117 actccaaatcctttgttgaattgtcacctaaatagttgtattccaaatttagcaatagtagatcttttagccatcctagagttggaacttgtccaacaaa 216  Q
    |||| |||||  | |||||||||| ||| |||||||||||||||||| | ||| |    ||||||  || |    ||||| |||||||||||||||| ||    
T  10610411 actctaaatctatagttgaattgttaccgaaatagttgtattccaaactcagccagtaaagatctggtaacttctctagacttggaacttgtccaaccaa 10610312  T
Q  217 atagttttgaccgagatcaaata-ttgtaatgggggatgatgcatttgttatggaagtggggattggacctgagaattgatttccccca 304  Q
    || ||||||||| | ||||| || |||||    |||| || |||||||  ||||||   |||||||||||||||||||||||||| |||    
T  10610311 attgttttgacctaaatcaattatttgta----gggaagaagcatttgcaatggaaacagggattggacctgagaattgatttcctcca 10610227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 1 - 147
Target Start/End: Original strand, 10661476 - 10661623
Alignment:
Q  1 atagctcaataagttcagtggataaattgcctatgaaatttggcaagttgcctccaaaattgttattgtttatagaaagcacttgcaacttagtataatt 100  Q
    |||||| | |||||| |||||||||||||||||  |||||||||||||| || |||||||  ||| ||  |||||||| ||||   |  |||||  | ||    
T  10661476 atagctgactaagttgagtggataaattgcctacaaaatttggcaagttacccccaaaatgattactggatatagaaatcactcttagtttagtgaagtt 10661575  T
Q  101 -gtcaaagattttaaaaactccaaatcctttgttgaattgtcacctaa 147  Q
     ||||| | ||| ||||||||||||||||| |||||||||||||||||    
T  10661576 tgtcaaggttttcaaaaactccaaatccttagttgaattgtcacctaa 10661623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 1 - 66
Target Start/End: Original strand, 10653590 - 10653655
Alignment:
Q  1 atagctcaataagttcagtggataaattgcctatgaaatttggcaagttgcctccaaaattgttat 66  Q
    |||||| | |||||| |||||||||||||||||  |||||||||||||| ||||||||||| ||||    
T  10653590 atagctgactaagttgagtggataaattgcctacaaaatttggcaagttacctccaaaattattat 10653655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 18 - 169
Target Start/End: Original strand, 10748423 - 10748575
Alignment:
Q  18 gtggataaattgcctatgaaatttggcaagttgcctccaaaattgttattgtttatagaaagcacttgcaacttagtataatt-gtcaaagattttaaaa 116  Q
    ||||||||| |||| ||| ||||||||||  | |||||||| || |||||   |||||||| |||||  |  ||| || |||| |||||| | |||||||    
T  10748423 gtggataaactgccaatggaatttggcaaactacctccaaacttattattacatatagaaaccacttctagtttactacaatttgtcaaatactttaaaa 10748522  T
Q  117 actccaaatcctttgttgaattgtcacctaaatagttgtattccaaatttagc 169  Q
    |||| |||||  | |||||||||| ||| |||||||||| |||||||||||||    
T  10748523 actctaaatcgatagttgaattgttaccgaaatagttgtcttccaaatttagc 10748575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 10 - 148
Target Start/End: Complemental strand, 7191814 - 7191675
Alignment:
Q  10 taagttcagtggataaattgcctatgaaatttggcaagttgcctccaaaattgttattgtttatagaaagcacttgcaacttagtataatt-gtcaaaga 108  Q
    |||||| |||||||||||| || ||| |||||||||| || ||||||||||| |||  |  |||||||| |||| | |  ||| || | || ||||| ||    
T  7191814 taagttgagtggataaattcccaatggaatttggcaaattacctccaaaattattaaaggatatagaaaacactagtagtttactacagtttgtcaagga 7191715  T
Q  109 ttttaaaaactccaaatcctttgttgaattgtcacctaaa 148  Q
    |||||||||||| |||||||| || ||||||| |||||||    
T  7191714 ttttaaaaactctaaatccttagtggaattgttacctaaa 7191675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 19 - 149
Target Start/End: Complemental strand, 10557720 - 10557589
Alignment:
Q  19 tggataaattgcctatgaaatttggcaagttgcctccaaaattgttattgtttatagaaagcacttgcaacttagtataatt-gtcaaagattttaaaaa 117  Q
    ||||||||||||||   |||||||||||  | ||||||||||| |||| |  |||||||  ||||||||||||| || | || ||||| |||||||||||    
T  10557720 tggataaattgcctgccaaatttggcaaactacctccaaaattattatgggatatagaacacacttgcaacttactacagttagtcaatgattttaaaaa 10557621  T
Q  118 ctccaaatcctttgttgaattgtcacctaaat 149  Q
       ||||||||| |||||||| ||||| ||||    
T  10557620 aatcaaatccttagttgaattttcaccaaaat 10557589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 24 - 144
Target Start/End: Complemental strand, 10549588 - 10549467
Alignment:
Q  24 aaattgcctatgaaatttggcaagttgcctccaaaattgttattgtttatagaaagcacttgcaacttagtataatt-gtcaaagattttaaaaactcca 122  Q
    ||||| ||||||||| |||||||  | ||||||||||| |||| |  ||||||||   ||||||| ||| || |||| ||||| | ||||||||| || |    
T  10549588 aaattacctatgaaacttggcaaactacctccaaaattattatgggatatagaaaatgcttgcaaattactacaatttgtcaatggttttaaaaattcta 10549489  T
Q  123 aatcctttgttgaattgtcacc 144  Q
    ||||||| ||||||||||||||    
T  10549488 aatccttagttgaattgtcacc 10549467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 451 - 554
Target Start/End: Complemental strand, 10549148 - 10549045
Alignment:
Q  451 caagcttttgaggtgacatatttcttgtggaatatctctttctaagttgttataagcaaatgaaaaatcggttaagcttgaaagattccctatgaatgaa 550  Q
    |||| |||||||  ||||||||||||||||||||||||  || || |||||||||| || ||||||| |  | ||   |||||||||||||| ||||| |    
T  10549148 caagtttttgagacgacatatttcttgtggaatatctccctccaaattgttataagaaactgaaaaacctatcaaatatgaaagattccctaagaatgga 10549049  T
Q  551 ggga 554  Q
    ||||    
T  10549048 ggga 10549045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 257 - 306
Target Start/End: Complemental strand, 10579571 - 10579522
Alignment:
Q  257 gcatttgttatggaagtggggattggacctgagaattgatttcccccaat 306  Q
    |||||||  |||||||| ||||||||||| |||||||||||||| |||||    
T  10579571 gcatttgcaatggaagttgggattggaccagagaattgatttcctccaat 10579522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 257 - 306
Target Start/End: Original strand, 10590072 - 10590121
Alignment:
Q  257 gcatttgttatggaagtggggattggacctgagaattgatttcccccaat 306  Q
    |||||||  |||||||| ||||||||||| |||||||||||||| |||||    
T  10590072 gcatttgcaatggaagttgggattggaccagagaattgatttcctccaat 10590121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 64; Significance: 1e-27; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 376 - 567
Target Start/End: Complemental strand, 12897995 - 12897804
Alignment:
Q  376 aataagtgatgagatattgtaaaaacaagaaggaatcataccagacaaattgttcacaccccgatttaaaattgacaagcttttgaggtgacatatttct 475  Q
    |||||||||||||||||| |||| ||||||||||||| |||| ||||||||||| |||| |  |  ||||  || ||||  |||||||  ||||||||||    
T  12897995 aataagtgatgagatattataaagacaagaaggaatcttaccggacaaattgttgacactcaaacctaaatatgtcaagtgtttgaggaaacatatttct 12897896  T
Q  476 tgtggaatatctctttctaagttgttataagcaaatgaaaaatcggttaagcttgaaagattccctatgaatgaagggattcctccggttaa 567  Q
    |||||||||||||  || || ||||| | || || ||| | |   ||||||||||||||||| || ||||||||||||||||||||||||||    
T  12897895 tgtggaatatctccctcaaaattgttttcagaaactgacagacgtgttaagcttgaaagatttccaatgaatgaagggattcctccggttaa 12897804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 323 - 581
Target Start/End: Complemental strand, 12956561 - 12956303
Alignment:
Q  323 aacatgttgggtggaagagagccataaaagttattcattgttagtgtgagctcaataagtgatgagatattgtaaaaacaagaaggaatcataccagaca 422  Q
    |||||||||||||||| |||||||| || ||||||   |||||  |  ||  ||||||||||||||||||| |||| ||||||||||||| |||| ||||    
T  12956561 aacatgttgggtggaaaagagccatgaaggttattttgtgttaccgcaagggcaataagtgatgagatattataaagacaagaaggaatcttaccggaca 12956462  T
Q  423 aattgttcacaccccgatttaaaattgacaagcttttgaggtgacatatttcttgtggaatatctctttctaagttgttataagcaaatgaaaaatcggt 522  Q
    |||||||| |||||  |  ||||| || ||||  ||||  |  |||||||||||||||||||||||  || || ||||||  || |  ||| | |   ||    
T  12956461 aattgttctcacccaaagctaaaaatgtcaagtgtttgcagcaacatatttcttgtggaatatctccctcaaaattgttacgagaagctgatagacgtgt 12956362  T
Q  523 taagcttgaaagattccctatgaatgaagggattcctccggttaatttatttttccaaa 581  Q
    ||||||||||||||| |||||||||||||||||||| || ||||| || ||| ||||||    
T  12956361 taagcttgaaagatttcctatgaatgaagggattccaccagttaacttgtttctccaaa 12956303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 376 - 581
Target Start/End: Complemental strand, 12905617 - 12905411
Alignment:
Q  376 aataagtgatgagatattgtaaaaacaagaaggaatcataccagacaaattgtt-cacaccccgatttaaaattgacaagcttttgaggtgacatatttc 474  Q
    |||||||||||||||||| |||| ||||||||| ||| |||| ||||||||||| | |||||  |  ||||| || ||||  |||||||  |||||||||    
T  12905617 aataagtgatgagatattataaagacaagaaggtatcttaccggacaaattgtttctcacccaaagctaaaaatgtcaagtgtttgaggaaacatatttc 12905518  T
Q  475 ttgtggaatatctctttctaagttgttataagcaaatgaaaaatcggttaagcttgaaagattccctatgaatgaagggattcctccggttaatttattt 574  Q
    ||||||||||||||  || || ||||||  || || ||| | |   ||||||||||||| ||| |||||||||||||||||||| |||||||| || |||    
T  12905517 ttgtggaatatctccctcaaaattgttaccagaaactgatagacgtgttaagcttgaaatatttcctatgaatgaagggattccaccggttaacttgttt 12905418  T
Q  575 ttccaaa 581  Q
     ||||||    
T  12905417 ctccaaa 12905411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 323 - 577
Target Start/End: Complemental strand, 12947124 - 12946870
Alignment:
Q  323 aacatgttgggtggaagagagccataaaagttattcattgttagtgtgagctcaataagtgatgagatattgtaaaaacaagaaggaatcataccagaca 422  Q
    ||||||||||||| || |||||||| || || ||||| |||||  |  ||  ||||||||||||||||||| |||| ||||||||||||| |||| ||||    
T  12947124 aacatgttgggtgcaaaagagccatgaaggtgattcagtgttaccgaaaggacaataagtgatgagatattataaagacaagaaggaatcttaccggaca 12947025  T
Q  423 aattgttcacaccccgatttaaaattgacaagcttttgaggtgacatatttcttgtggaatatctctttctaagttgttataagcaaatgaaaaatcggt 522  Q
    |||||||| ||  |  |  ||||| || ||||  ||||||   |||||||||||||||||| ||||  || || ||||| | || || | | | |   ||    
T  12947024 aattgttctcattcaaagctaaaaatgtcaagtgtttgagaaaacatatttcttgtggaatgtctccctcaaaattgttttcagaaactaatagacgtgt 12946925  T
Q  523 taagcttgaaagattccctatgaatgaagggattcctccggttaatttatttttc 577  Q
    ||||||||||||||| || ||||||||||||||||||||| |||| || ||||||    
T  12946924 taagcttgaaagatttccaatgaatgaagggattcctccgattaaattgtttttc 12946870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 323 - 483
Target Start/End: Complemental strand, 12930759 - 12930599
Alignment:
Q  323 aacatgttgggtggaagagagccataaaagttattcattgttagtgtgagctcaataagtgatgagatattgtaaaaacaagaaggaatcataccagaca 422  Q
    |||||||||||||||| |||||||| || || ||||  |||||  || ||   |||||||||||||||||| |||| ||||||||||||| |||| ||||    
T  12930759 aacatgttgggtggaaaagagccatgaaggtgattctgtgttaccgtaagggaaataagtgatgagatattataaagacaagaaggaatcttaccggaca 12930660  T
Q  423 aattgttcacaccccgatttaaaattgacaagcttttgaggtgacatatttcttgtggaat 483  Q
    |||||||| ||| |  |  |||||||| ||||  |||||||  ||||||||||||||||||    
T  12930659 aattgttctcactcacacctaaaattgtcaagtgtttgaggaaacatatttcttgtggaat 12930599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 8 - 66
Target Start/End: Complemental strand, 12956892 - 12956834
Alignment:
Q  8 aataagttcagtggataaattgcctatgaaatttggcaagttgcctccaaaattgttat 66  Q
    ||||||||||||||||||||| |||||| |||||||||| | |||||||||||| ||||    
T  12956892 aataagttcagtggataaattccctatggaatttggcaaatggcctccaaaattattat 12956834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 10 - 168
Target Start/End: Complemental strand, 12905999 - 12905840
Alignment:
Q  10 taagttcagtggataaattgcctatgaaatttggcaagttgcctccaaaattgttattgtttatagaaagcacttgcaacttagtataatt-gtcaaaga 108  Q
    ||||||||||||| || ||||||||| |||||||||| |  ||||||||||| |||   | ||| |||||||| |  |  ||| |  |||| |||||| |    
T  12905999 taagttcagtggaaaagttgcctatggaatttggcaaatgtcctccaaaattattagaatctattgaaagcacgtatagtttactgcaatttgtcaaata 12905900  T
Q  109 ttttaaaaactccaaatcctttgttgaattgtcacctaaatagttgtattccaaatttag 168  Q
    |||||||||||| |||||||| |||||| ||| |||||||| |||| || ||||| ||||    
T  12905899 ttttaaaaactctaaatccttagttgaaatgttacctaaattgttgaatcccaaacttag 12905840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 11 - 149
Target Start/End: Complemental strand, 12931087 - 12930948
Alignment:
Q  11 aagttcagtggataaattgcctatgaaatttggcaagttgcctccaaaattgttattgtttatagaaagcacttgcaacttagtataa-ttgtcaaagat 109  Q
    ||||||||| ||||||||||||||| |||||||||| |  ||||||||||| ||||    ||| |||||||| |  |  ||| |  || |||||||| ||    
T  12931087 aagttcagtcgataaattgcctatggaatttggcaaatgacctccaaaattattataagatatcgaaagcacgtatagtttactgcaatttgtcaaatat 12930988  T
Q  110 tttaaaaactccaaatcctttgttgaattgtcacctaaat 149  Q
    ||||||||||| |||||| | |||||||||| ||||||||    
T  12930987 tttaaaaactctaaatccatagttgaattgttacctaaat 12930948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 11 - 46
Target Start/End: Complemental strand, 12947452 - 12947417
Alignment:
Q  11 aagttcagtggataaattgcctatgaaatttggcaa 46  Q
    ||||||||||||||||||||||||| ||||||||||    
T  12947452 aagttcagtggataaattgcctatggaatttggcaa 12947417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 521 - 567
Target Start/End: Complemental strand, 12930561 - 12930515
Alignment:
Q  521 gttaagcttgaaagattccctatgaatgaagggattcctccggttaa 567  Q
    ||||||| ||||||||| ||||| ||||||||||||||| |||||||    
T  12930561 gttaagcatgaaagatttcctataaatgaagggattccttcggttaa 12930515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 52; Significance: 2e-20; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 376 - 567
Target Start/End: Original strand, 17925185 - 17925376
Alignment:
Q  376 aataagtgatgagatattgtaaaaacaagaaggaatcataccagacaaattgttcacaccccgatttaaaattgacaagcttttgaggtgacatatttct 475  Q
    ||||||||||||||| || |||| |||||| |||||| |||| || ||||||||| |||||  |  ||||| || ||||  |||| ||  ||||||||||    
T  17925185 aataagtgatgagatgttataaagacaagatggaatcttaccggaaaaattgttctcacccaaagctaaaaatgtcaagtgtttgcggcaacatatttct 17925284  T
Q  476 tgtggaatatctctttctaagttgttataagcaaatgaaaaatcggttaagcttgaaagattccctatgaatgaagggattcctccggttaa 567  Q
    |||||||||||||  || || ||||||  ||||  ||| | |   ||||||| ||||||||| ||||||||||||||||||||||| |||||    
T  17925285 tgtggaatatctccctcaaaattgttaagagcagctgatagacgtgttaagcatgaaagatttcctatgaatgaagggattcctccagttaa 17925376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 99 - 168
Target Start/End: Original strand, 17924893 - 17924962
Alignment:
Q  99 ttgtcaaagattttaaaaactccaaatcctttgttgaattgtcacctaaatagttgtattccaaatttag 168  Q
    |||||||| ||||||||||||| |||||| | |||||||| |||||||||| ||| | ||||||||||||    
T  17924893 ttgtcaaatattttaaaaactctaaatccatagttgaattatcacctaaattgttttcttccaaatttag 17924962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 10 - 66
Target Start/End: Original strand, 17924803 - 17924859
Alignment:
Q  10 taagttcagtggataaattgcctatgaaatttggcaagttgcctccaaaattgttat 66  Q
    ||||||||||||||||||| |||||| |||||||||| |  ||||||||||| ||||    
T  17924803 taagttcagtggataaattccctatggaatttggcaaatgacctccaaaattattat 17924859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 34; Significance: 0.0000000009; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 257 - 306
Target Start/End: Original strand, 31468804 - 31468853
Alignment:
Q  257 gcatttgttatggaagtggggattggacctgagaattgatttcccccaat 306  Q
    ||||||| ||||||||| ||||||||||||||||||||||| || |||||    
T  31468804 gcatttgatatggaagttgggattggacctgagaattgattcccaccaat 31468853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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