View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9308_low_31 (Length: 347)

Name: NF9308_low_31
Description: NF9308
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9308_low_31
NF9308_low_31
[»] chr8 (23 HSPs)
chr8 (3-331)||(29447479-29447797)
chr8 (49-108)||(22652047-22652106)
chr8 (49-108)||(36450694-36450753)
chr8 (48-108)||(8343386-8343446)
chr8 (49-107)||(29447040-29447098)
chr8 (55-108)||(8343033-8343086)
chr8 (49-104)||(5813652-5813707)
chr8 (49-108)||(16641909-16641968)
chr8 (49-108)||(18407779-18407838)
chr8 (49-108)||(24858076-24858135)
chr8 (53-109)||(40064026-40064082)
chr8 (49-96)||(22943301-22943348)
chr8 (49-108)||(29510233-29510292)
chr8 (49-108)||(41837667-41837726)
chr8 (59-106)||(44067597-44067644)
chr8 (64-110)||(13436908-13436954)
chr8 (50-108)||(14134760-14134818)
chr8 (72-110)||(25566913-25566951)
chr8 (59-108)||(38487157-38487206)
chr8 (60-108)||(11803341-11803389)
chr8 (5-33)||(12402685-12402713)
chr8 (49-109)||(12570437-12570497)
chr8 (49-109)||(12570663-12570723)
[»] chr7 (22 HSPs)
chr7 (49-108)||(1433519-1433578)
chr7 (49-108)||(21864868-21864927)
chr7 (49-108)||(5409771-5409830)
chr7 (50-108)||(29763129-29763187)
chr7 (59-108)||(40131939-40131988)
chr7 (1-45)||(17307926-17307970)
chr7 (49-109)||(21880212-21880272)
chr7 (49-108)||(598268-598327)
chr7 (49-108)||(15680869-15680928)
chr7 (49-108)||(43027404-43027463)
chr7 (55-108)||(24105744-24105797)
chr7 (49-110)||(24339713-24339774)
chr7 (49-108)||(9778565-9778624)
chr7 (49-107)||(32287404-32287462)
chr7 (58-108)||(35749956-35750006)
chr7 (59-108)||(6490786-6490835)
chr7 (50-107)||(20545185-20545242)
chr7 (59-108)||(30813867-30813916)
chr7 (49-113)||(32093949-32094014)
chr7 (54-106)||(29998974-29999026)
chr7 (53-109)||(38804488-38804544)
chr7 (59-103)||(43250074-43250118)
[»] chr6 (25 HSPs)
chr6 (49-108)||(24645541-24645600)
chr6 (49-108)||(7248429-7248488)
chr6 (49-108)||(10294178-10294237)
chr6 (50-109)||(3209460-3209519)
chr6 (49-108)||(10339054-10339113)
chr6 (49-107)||(17841530-17841588)
chr6 (53-107)||(31959214-31959268)
chr6 (47-108)||(8776908-8776969)
chr6 (65-106)||(26178620-26178661)
chr6 (49-110)||(34595194-34595255)
chr6 (49-109)||(7378039-7378099)
chr6 (60-108)||(13364645-13364693)
chr6 (49-105)||(32978842-32978898)
chr6 (49-108)||(4878003-4878061)
chr6 (49-108)||(8365448-8365507)
chr6 (49-108)||(9629454-9629513)
chr6 (49-108)||(16833368-16833427)
chr6 (49-108)||(17327590-17327649)
chr6 (49-108)||(28152158-28152217)
chr6 (49-111)||(5000552-5000614)
chr6 (49-111)||(9107296-9107358)
chr6 (50-108)||(34073278-34073335)
chr6 (59-108)||(9027237-9027286)
chr6 (49-113)||(8714051-8714115)
chr6 (68-108)||(20576573-20576613)
[»] chr1 (20 HSPs)
chr1 (49-108)||(9828115-9828174)
chr1 (49-106)||(1486646-1486703)
chr1 (49-106)||(16297223-16297280)
chr1 (49-108)||(5898206-5898265)
chr1 (49-108)||(6427535-6427594)
chr1 (56-107)||(10233323-10233374)
chr1 (49-108)||(40917820-40917879)
chr1 (49-107)||(40258874-40258932)
chr1 (59-108)||(2218298-2218347)
chr1 (49-106)||(42359391-42359448)
chr1 (64-108)||(22881567-22881611)
chr1 (49-96)||(6612112-6612159)
chr1 (49-108)||(17408762-17408821)
chr1 (53-112)||(17831458-17831517)
chr1 (49-108)||(37598891-37598950)
chr1 (49-107)||(21032277-21032335)
chr1 (70-108)||(48450550-48450588)
chr1 (59-108)||(16164244-16164293)
chr1 (48-108)||(1815316-1815376)
chr1 (1-48)||(44482263-44482308)
[»] chr5 (23 HSPs)
chr5 (52-110)||(32766870-32766928)
chr5 (49-105)||(39268541-39268597)
chr5 (49-108)||(27932295-27932354)
chr5 (49-108)||(39698612-39698671)
chr5 (49-108)||(43564941-43565000)
chr5 (207-280)||(14584141-14584214)
chr5 (60-109)||(19820327-19820376)
chr5 (60-108)||(38464313-38464361)
chr5 (49-109)||(42893420-42893480)
chr5 (49-108)||(11686009-11686068)
chr5 (49-108)||(16304366-16304425)
chr5 (49-108)||(21576685-21576744)
chr5 (49-108)||(30098397-30098456)
chr5 (49-107)||(3966574-3966632)
chr5 (62-108)||(19737421-19737467)
chr5 (72-114)||(22423758-22423800)
chr5 (59-108)||(2436981-2437030)
chr5 (59-108)||(14873592-14873641)
chr5 (73-106)||(18421779-18421812)
chr5 (49-106)||(23015926-23015983)
chr5 (60-108)||(7677787-7677835)
chr5 (234-278)||(15113355-15113399)
chr5 (49-109)||(31084388-31084448)
[»] chr4 (31 HSPs)
chr4 (53-108)||(18513175-18513230)
chr4 (49-108)||(23292926-23292985)
chr4 (49-108)||(24613630-24613689)
chr4 (49-107)||(3947702-3947760)
chr4 (49-107)||(14465006-14465064)
chr4 (50-108)||(30103297-30103355)
chr4 (58-107)||(17425348-17425397)
chr4 (61-110)||(37203324-37203373)
chr4 (50-110)||(715543-715603)
chr4 (50-110)||(752869-752929)
chr4 (60-108)||(17876237-17876285)
chr4 (59-107)||(40965341-40965389)
chr4 (54-110)||(42640589-42640645)
chr4 (60-112)||(47264068-47264120)
chr4 (49-108)||(8423658-8423717)
chr4 (49-108)||(11650678-11650737)
chr4 (49-108)||(12895214-12895273)
chr4 (1-108)||(22234819-22234916)
chr4 (59-106)||(22440559-22440606)
chr4 (59-110)||(24343583-24343634)
chr4 (49-107)||(30982808-30982866)
chr4 (49-110)||(29205528-29205589)
chr4 (49-110)||(36635390-36635451)
chr4 (59-103)||(3712458-3712502)
chr4 (60-108)||(11596297-11596345)
chr4 (4-32)||(15659755-15659783)
chr4 (60-108)||(16184902-16184950)
chr4 (72-108)||(30299012-30299048)
chr4 (72-108)||(30327880-30327916)
chr4 (49-109)||(34306743-34306803)
chr4 (60-108)||(40699887-40699935)
[»] chr3 (26 HSPs)
chr3 (49-108)||(34185052-34185111)
chr3 (49-108)||(27505311-27505370)
chr3 (49-108)||(55401135-55401194)
chr3 (49-106)||(4987222-4987279)
chr3 (59-108)||(17005548-17005597)
chr3 (49-110)||(20503525-20503586)
chr3 (60-108)||(28812597-28812645)
chr3 (59-110)||(11610579-11610630)
chr3 (59-106)||(24204983-24205030)
chr3 (59-106)||(25775577-25775624)
chr3 (49-108)||(40993275-40993334)
chr3 (49-108)||(41961579-41961638)
chr3 (58-100)||(21720841-21720883)
chr3 (65-107)||(34910393-34910435)
chr3 (58-107)||(1389907-1389956)
chr3 (50-107)||(15999951-16000008)
chr3 (58-107)||(25365531-25365580)
chr3 (226-279)||(25962717-25962770)
chr3 (60-109)||(33359826-33359875)
chr3 (59-108)||(40052382-40052431)
chr3 (59-103)||(1509637-1509681)
chr3 (49-101)||(3631744-3631796)
chr3 (56-108)||(10455863-10455915)
chr3 (49-109)||(11252036-11252096)
chr3 (1-48)||(16192731-16192776)
chr3 (63-107)||(25211604-25211648)
[»] chr2 (18 HSPs)
chr2 (49-111)||(26769582-26769644)
chr2 (49-108)||(27084329-27084388)
chr2 (49-106)||(2438661-2438718)
chr2 (51-108)||(21782744-21782801)
chr2 (55-112)||(24975251-24975308)
chr2 (49-107)||(35449567-35449627)
chr2 (59-108)||(37419824-37419873)
chr2 (58-109)||(10535684-10535735)
chr2 (49-108)||(18840953-18841012)
chr2 (49-108)||(38117099-38117158)
chr2 (49-108)||(42511322-42511381)
chr2 (2-32)||(18054798-18054828)
chr2 (49-107)||(28596529-28596587)
chr2 (50-108)||(28677975-28678033)
chr2 (49-107)||(44860391-44860449)
chr2 (60-109)||(11223792-11223841)
chr2 (59-108)||(38919288-38919336)
chr2 (1-48)||(35056901-35056946)
[»] scaffold0003 (2 HSPs)
scaffold0003 (49-110)||(241665-241726)
scaffold0003 (59-108)||(236914-236963)
[»] scaffold0019 (1 HSPs)
scaffold0019 (49-108)||(71796-71855)
[»] scaffold0053 (1 HSPs)
scaffold0053 (49-110)||(8858-8919)
[»] scaffold0793 (1 HSPs)
scaffold0793 (50-110)||(4819-4879)
[»] scaffold0361 (1 HSPs)
scaffold0361 (49-109)||(14587-14647)
[»] scaffold0652 (1 HSPs)
scaffold0652 (49-107)||(403-461)
[»] scaffold0020 (1 HSPs)
scaffold0020 (59-108)||(135263-135312)
[»] scaffold0050 (1 HSPs)
scaffold0050 (49-105)||(70338-70394)


Alignment Details
Target: chr8 (Bit Score: 245; Significance: 1e-136; HSPs: 23)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 3 - 331
Target Start/End: Original strand, 29447479 - 29447797
Alignment:
Q  3 agtgtaattatatgtgttggtgtcgtgtcgtcgtgtctgacacgacgacacgacatgtgtccgacaccaggacacgtctaatcggaggagtgtctgtgct 102  Q
    ||||||||||||||||||||||||||||||  ||||| ||||        |||||||||||||||||| ||||| ||||||||||||||||||| |||||    
T  29447479 agtgtaattatatgtgttggtgtcgtgtcg--gtgtcagaca--------cgacatgtgtccgacaccgggacaggtctaatcggaggagtgtccgtgct 29447568  T
Q  103 tcatagatgggaaacactaacgaaaaatgcacgaagaatcagtatccagtttgtcgaatgattataagaaattcacctcagattttccaagttccctttc 202  Q
    ||||||||  |||||||||| | |||||||| |||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29447569 tcatagatcagaaacactaatggaaaatgcatgaagaatcagaatccggtttgtcgaatgattataagaaattcacctcagattttccaagttccctttc 29447668  T
Q  203 catattttaagagagaaacatataacaattcattccaagtatctggtactccaggcaaacaccaatggctgcaatcttcgtatagcgaagaagagttctg 302  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29447669 catattttaagagagaaacatataacaattcattccaagtatctggtactccaggcaaacaccaatggctgcaatcttcgtatagcgaagaagagttctg 29447768  T
Q  303 cttcattgatgtcttgtaatcttttcggt 331  Q
    |||||||||||||||||||||||||||||    
T  29447769 cttcattgatgtcttgtaatcttttcggt 29447797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 49 - 108
Target Start/End: Original strand, 22652047 - 22652106
Alignment:
Q  49 gacacgacatgtgtccgacaccaggacacgtctaatcggaggagtgtctgtgcttcatag 108  Q
    |||||||||||||||||||||| |||||||||||||| |||||||||| |||||||||||    
T  22652047 gacacgacatgtgtccgacaccgggacacgtctaatccgaggagtgtccgtgcttcatag 22652106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 49 - 108
Target Start/End: Complemental strand, 36450753 - 36450694
Alignment:
Q  49 gacacgacatgtgtccgacaccaggacacgtctaatcggaggagtgtctgtgcttcatag 108  Q
    ||||||||  |||||||||||||||||||| |||||| ||||||||||||||||||||||    
T  36450753 gacacgacgcgtgtccgacaccaggacacgcctaatccgaggagtgtctgtgcttcatag 36450694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 48 - 108
Target Start/End: Original strand, 8343386 - 8343446
Alignment:
Q  48 cgacacgacatgtgtccgacaccaggacacgtctaatcggaggagtgtctgtgcttcatag 108  Q
    |||||||||| |||||||||||| ||||||| |||||| || |||||||||||||||||||    
T  8343386 cgacacgacacgtgtccgacaccgggacacgcctaatccgaagagtgtctgtgcttcatag 8343446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 49 - 107
Target Start/End: Complemental strand, 29447098 - 29447040
Alignment:
Q  49 gacacgacatgtgtccgacaccaggacacgtctaatcggaggagtgtctgtgcttcata 107  Q
    ||||||||||||||| |||||||||||||| ||||||  ||||||||| ||||||||||    
T  29447098 gacacgacatgtgtctgacaccaggacacgcctaatcctaggagtgtccgtgcttcata 29447040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 55 - 108
Target Start/End: Original strand, 8343033 - 8343086
Alignment:
Q  55 acatgtgtccgacaccaggacacgtctaatcggaggagtgtctgtgcttcatag 108  Q
    |||||||||||||||| ||||||| |||||| || |||||||||||||||||||    
T  8343033 acatgtgtccgacaccgggacacgcctaatccgaagagtgtctgtgcttcatag 8343086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 49 - 104
Target Start/End: Original strand, 5813652 - 5813707
Alignment:
Q  49 gacacgacatgtgtccgacaccaggacacgtctaatcggaggagtgtctgtgcttc 104  Q
    ||||||||| |||||||||||| ||||||| ||||| ||||||||||| |||||||    
T  5813652 gacacgacacgtgtccgacaccgggacacgcctaattggaggagtgtccgtgcttc 5813707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 49 - 108
Target Start/End: Complemental strand, 16641968 - 16641909
Alignment:
Q  49 gacacgacatgtgtccgacaccaggacacgtctaatcggaggagtgtctgtgcttcatag 108  Q
    |||||||||||||||  ||||| ||||||  |||||| ||||||||||||||||||||||    
T  16641968 gacacgacatgtgtctaacaccgggacacacctaatccgaggagtgtctgtgcttcatag 16641909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 49 - 108
Target Start/End: Original strand, 18407779 - 18407838
Alignment:
Q  49 gacacgacatgtgtccgacaccaggacacgtctaatcggaggagtgtctgtgcttcatag 108  Q
    |||||||||  |||||||||| |||||||| ||||| ||||||||||| |||||||||||    
T  18407779 gacacgacacatgtccgacactaggacacgcctaattggaggagtgtccgtgcttcatag 18407838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 49 - 108
Target Start/End: Original strand, 24858076 - 24858135
Alignment:
Q  49 gacacgacatgtgtccgacaccaggacacgtctaatcggaggagtgtctgtgcttcatag 108  Q
    |||||||||||||||| || || ||||||| |||||| ||||||||| ||||||||||||    
T  24858076 gacacgacatgtgtcccacgccgggacacgcctaatcagaggagtgtttgtgcttcatag 24858135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 53 - 109
Target Start/End: Original strand, 40064026 - 40064082
Alignment:
Q  53 cgacatgtgtccgacaccaggacacgtctaatcggaggagtgtctgtgcttcataga 109  Q
    |||| ||||||||||||| |||||| ||||||| |||||||||| ||||| ||||||    
T  40064026 cgacgtgtgtccgacaccgggacacatctaatccgaggagtgtccgtgctacataga 40064082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 49 - 96
Target Start/End: Complemental strand, 22943348 - 22943301
Alignment:
Q  49 gacacgacatgtgtccgacaccaggacacgtctaatcggaggagtgtc 96  Q
    ||||||||| |||||||||||| ||||||| |||||| ||||||||||    
T  22943348 gacacgacacgtgtccgacaccgggacacgcctaatccgaggagtgtc 22943301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 49 - 108
Target Start/End: Complemental strand, 29510292 - 29510233
Alignment:
Q  49 gacacgacatgtgtccgacaccaggacacgtctaatcggaggagtgtctgtgcttcatag 108  Q
    ||||||||  |||||||||||| ||||||  |||||| |||||||||| |||||||||||    
T  29510292 gacacgacgcgtgtccgacaccgggacacacctaatccgaggagtgtccgtgcttcatag 29510233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 49 - 108
Target Start/End: Complemental strand, 41837726 - 41837667
Alignment:
Q  49 gacacgacatgtgtccgacaccaggacacgtctaatcggaggagtgtctgtgcttcatag 108  Q
    |||||||||||| ||||||| ||| |||||||||||| || ||||||| || ||||||||    
T  41837726 gacacgacatgtatccgacaacagaacacgtctaatccgaagagtgtccgttcttcatag 41837667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 59 - 106
Target Start/End: Original strand, 44067597 - 44067644
Alignment:
Q  59 gtgtccgacaccaggacacgtctaatcggaggagtgtctgtgcttcat 106  Q
    |||||||||||||||||||| |||||  |||||||||| |||||||||    
T  44067597 gtgtccgacaccaggacacgcctaattcgaggagtgtccgtgcttcat 44067644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 64 - 110
Target Start/End: Complemental strand, 13436954 - 13436908
Alignment:
Q  64 cgacaccaggacacgtctaatcggaggagtgtctgtgcttcatagat 110  Q
    ||||||| ||||||| ||||||  |||||||||||||||||||||||    
T  13436954 cgacaccgggacacgcctaatccaaggagtgtctgtgcttcatagat 13436908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 50 - 108
Target Start/End: Original strand, 14134760 - 14134818
Alignment:
Q  50 acacgacatgtgtccgacaccaggacacgtctaatcggaggagtgtctgtgcttcatag 108  Q
    |||||||| ||||||| |||||||||||| |||||  |||||||||| ||| |||||||    
T  14134760 acacgacacgtgtccgtcaccaggacacgcctaattcgaggagtgtccgtgtttcatag 14134818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 72 - 110
Target Start/End: Original strand, 25566913 - 25566951
Alignment:
Q  72 ggacacgtctaatcggaggagtgtctgtgcttcatagat 110  Q
    ||||||| |||||| ||||||||||||||||||||||||    
T  25566913 ggacacgcctaatccgaggagtgtctgtgcttcatagat 25566951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 59 - 108
Target Start/End: Complemental strand, 38487206 - 38487157
Alignment:
Q  59 gtgtccgacaccaggacacgtctaatcggaggagtgtctgtgcttcatag 108  Q
    |||||||||||| ||||||   ||||| ||||||||||||||||||||||    
T  38487206 gtgtccgacacccggacacacataatccgaggagtgtctgtgcttcatag 38487157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 60 - 108
Target Start/End: Original strand, 11803341 - 11803389
Alignment:
Q  60 tgtccgacaccaggacacgtctaatcggaggagtgtctgtgcttcatag 108  Q
    ||||||||||  | |||||||||||| |||||||||| |||||||||||    
T  11803341 tgtccgacacaggtacacgtctaatccgaggagtgtccgtgcttcatag 11803389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 5 - 33
Target Start/End: Complemental strand, 12402713 - 12402685
Alignment:
Q  5 tgtaattatatgtgttggtgtcgtgtcgt 33  Q
    |||||||||||||||||||||||||||||    
T  12402713 tgtaattatatgtgttggtgtcgtgtcgt 12402685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 49 - 109
Target Start/End: Complemental strand, 12570497 - 12570437
Alignment:
Q  49 gacacgacatgtgtccgacaccaggacacgtctaatcggaggagtgtctgtgcttcataga 109  Q
    ||||| ||| |||||||||||||||||||| |||||| || || |||| |||||| |||||    
T  12570497 gacactacacgtgtccgacaccaggacacgcctaatctgaagattgtccgtgctttataga 12570437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 49 - 109
Target Start/End: Complemental strand, 12570723 - 12570663
Alignment:
Q  49 gacacgacatgtgtccgacaccaggacacgtctaatcggaggagtgtctgtgcttcataga 109  Q
    ||||| ||| |||||||||||||||||||| |||||| || || |||| |||||| |||||    
T  12570723 gacactacacgtgtccgacaccaggacacgcctaatctgaagattgtccgtgctttataga 12570663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 48; Significance: 2e-18; HSPs: 22)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 49 - 108
Target Start/End: Original strand, 1433519 - 1433578
Alignment:
Q  49 gacacgacatgtgtccgacaccaggacacgtctaatcggaggagtgtctgtgcttcatag 108  Q
    |||| |||||||||||||||||||||||||||||||| |||||||||| |||||||||||    
T  1433519 gacaagacatgtgtccgacaccaggacacgtctaatccgaggagtgtccgtgcttcatag 1433578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 49 - 108
Target Start/End: Original strand, 21864868 - 21864927
Alignment:
Q  49 gacacgacatgtgtccgacaccaggacacgtctaatcggaggagtgtctgtgcttcatag 108  Q
    ||||||||| |||||||||||| |||||||||||||  ||||||||||||||||||||||    
T  21864868 gacacgacacgtgtccgacaccgggacacgtctaattcgaggagtgtctgtgcttcatag 21864927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 49 - 108
Target Start/End: Complemental strand, 5409830 - 5409771
Alignment:
Q  49 gacacgacatgtgtccgacaccaggacacgtctaatcggaggagtgtctgtgcttcatag 108  Q
    ||||||||| |||||||||||| ||||||| |||||| |||||||||| |||||||||||    
T  5409830 gacacgacacgtgtccgacaccgggacacgcctaatccgaggagtgtccgtgcttcatag 5409771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 50 - 108
Target Start/End: Complemental strand, 29763187 - 29763129
Alignment:
Q  50 acacgacatgtgtccgacaccaggacacgtctaatcggaggagtgtctgtgcttcatag 108  Q
    |||||||| |||||||||| ||||||||| |||||| |||||||||| |||||||||||    
T  29763187 acacgacacgtgtccgacatcaggacacgcctaatccgaggagtgtccgtgcttcatag 29763129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 59 - 108
Target Start/End: Complemental strand, 40131988 - 40131939
Alignment:
Q  59 gtgtccgacaccaggacacgtctaatcggaggagtgtctgtgcttcatag 108  Q
    |||||||||||  |||||||||||||| ||||||||||||||||||||||    
T  40131988 gtgtccgacacagggacacgtctaatccgaggagtgtctgtgcttcatag 40131939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 17307926 - 17307970
Alignment:
Q  1 tcagtgtaattatatgtgttggtgtcgtgtcgtcgtgtctgacac 45  Q
    |||||||||||||||||||||||||||||||| | ||||||||||    
T  17307926 tcagtgtaattatatgtgttggtgtcgtgtcggcatgtctgacac 17307970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 49 - 109
Target Start/End: Original strand, 21880212 - 21880272
Alignment:
Q  49 gacacgacatgtgtccgacaccaggacacgtctaatcggaggagtgtctgtgcttcataga 109  Q
    |||||||||  ||||||||||||||||||| |||||| ||| |||||| ||||||||||||    
T  21880212 gacacgacacatgtccgacaccaggacacgcctaatccgagaagtgtccgtgcttcataga 21880272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 49 - 108
Target Start/End: Original strand, 598268 - 598327
Alignment:
Q  49 gacacgacatgtgtccgacaccaggacacgtctaatcggaggagtgtctgtgcttcatag 108  Q
    ||||||||| |||||||||||| ||||||| |||||| ||| |||||| |||||||||||    
T  598268 gacacgacacgtgtccgacaccgggacacgcctaatccgagaagtgtccgtgcttcatag 598327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 49 - 108
Target Start/End: Original strand, 15680869 - 15680928
Alignment:
Q  49 gacacgacatgtgtccgacaccaggacacgtctaatcggaggagtgtctgtgcttcatag 108  Q
    ||||||||| ||||||||||||  ||||||||||||  |||||||||| |||||||||||    
T  15680869 gacacgacacgtgtccgacaccgagacacgtctaattcgaggagtgtccgtgcttcatag 15680928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 49 - 108
Target Start/End: Complemental strand, 43027463 - 43027404
Alignment:
Q  49 gacacgacatgtgtccgacaccaggacacgtctaatcggaggagtgtctgtgcttcatag 108  Q
    ||||||||| |||||||||||| ||||||| |||||| || ||||||| |||||||||||    
T  43027463 gacacgacacgtgtccgacaccgggacacgcctaatccgatgagtgtccgtgcttcatag 43027404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 55 - 108
Target Start/End: Original strand, 24105744 - 24105797
Alignment:
Q  55 acatgtgtccgacaccaggacacgtctaatcggaggagtgtctgtgcttcatag 108  Q
    |||||||||||||||| ||||||| |||| | ||||||||| ||||||||||||    
T  24105744 acatgtgtccgacaccgggacacgcctaacccgaggagtgtttgtgcttcatag 24105797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 49 - 110
Target Start/End: Original strand, 24339713 - 24339774
Alignment:
Q  49 gacacgacatgtgtccgacaccaggacacgtctaatcggaggagtgtctgtgcttcatagat 110  Q
    ||||||||| || ||||||||| ||||||| |||||| |||||||| | |||||||||||||    
T  24339713 gacacgacacgtatccgacaccgggacacgcctaatccgaggagtgcccgtgcttcatagat 24339774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 49 - 108
Target Start/End: Original strand, 9778565 - 9778624
Alignment:
Q  49 gacacgacatgtgtccgacaccaggacacgtctaatcggaggagtgtctgtgcttcatag 108  Q
    ||||| ||| |||||||||||| ||||||| ||||||  ||||||||| |||||||||||    
T  9778565 gacacaacacgtgtccgacaccgggacacgcctaatccaaggagtgtccgtgcttcatag 9778624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 49 - 107
Target Start/End: Complemental strand, 32287462 - 32287404
Alignment:
Q  49 gacacgacatgtgtccgacaccaggacacgtctaatcggaggagtgtctgtgcttcata 107  Q
    |||| |||| |||||||||||| ||||||  |||||| |||||||||| ||||||||||    
T  32287462 gacatgacaagtgtccgacaccgggacacacctaatccgaggagtgtccgtgcttcata 32287404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 58 - 108
Target Start/End: Original strand, 35749956 - 35750006
Alignment:
Q  58 tgtgtccgacaccaggacacgtctaatcggaggagtgtctgtgcttcatag 108  Q
    ||||||||| ||| ||||||  ||| |||||||||||||||||||||||||    
T  35749956 tgtgtccgaaaccgggacacacctagtcggaggagtgtctgtgcttcatag 35750006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 59 - 108
Target Start/End: Original strand, 6490786 - 6490835
Alignment:
Q  59 gtgtccgacaccaggacacgtctaatcggaggagtgtctgtgcttcatag 108  Q
    |||||||||||| |||||||  ||||| |||||||||| |||||||||||    
T  6490786 gtgtccgacaccgggacacgcttaatccgaggagtgtccgtgcttcatag 6490835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 50 - 107
Target Start/End: Complemental strand, 20545242 - 20545185
Alignment:
Q  50 acacgacatgtgtccgacaccaggacacgtctaatcggaggagtgtctgtgcttcata 107  Q
    ||||||||  ||||||||||  |||||||| ||||  |||||||||||||||||||||    
T  20545242 acacgacacatgtccgacacggggacacgtttaattcgaggagtgtctgtgcttcata 20545185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 59 - 108
Target Start/End: Original strand, 30813867 - 30813916
Alignment:
Q  59 gtgtccgacaccaggacacgtctaatcggaggagtgtctgtgcttcatag 108  Q
    |||||||||| ||| ||||| |||||| |||||||||| |||||||||||    
T  30813867 gtgtccgacatcagaacacgcctaatccgaggagtgtccgtgcttcatag 30813916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 49 - 113
Target Start/End: Complemental strand, 32094014 - 32093949
Alignment:
Q  49 gacacgacatgtgtccgacaccagg-acacgtctaatcggaggagtgtctgtgcttcatagatggg 113  Q
    ||||||||| |||||||||||| || ||||| |||||| |||||||||  ||||||||||| ||||    
T  32094014 gacacgacacgtgtccgacaccggggacacgcctaatccgaggagtgttcgtgcttcatagttggg 32093949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 54 - 106
Target Start/End: Complemental strand, 29999026 - 29998974
Alignment:
Q  54 gacatgtgtccgacaccaggacacgtctaatcggaggagtgtctgtgcttcat 106  Q
    |||| ||||||||||||   |||||||||||||||||||||||  ||||||||    
T  29999026 gacacgtgtccgacacctaaacacgtctaatcggaggagtgtccatgcttcat 29998974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 53 - 109
Target Start/End: Complemental strand, 38804544 - 38804488
Alignment:
Q  53 cgacatgtgtccgacaccaggacacgtctaatcggaggagtgtctgtgcttcataga 109  Q
    |||| |||||||||| || ||||| | |||||| ||||||||| |||||||||||||    
T  38804544 cgacgtgtgtccgacgccgggacatgcctaatccgaggagtgtatgtgcttcataga 38804488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 59 - 103
Target Start/End: Original strand, 43250074 - 43250118
Alignment:
Q  59 gtgtccgacaccaggacacgtctaatcggaggagtgtctgtgctt 103  Q
    |||||||||||||||||||| |||||  |||||||||| ||||||    
T  43250074 gtgtccgacaccaggacacgcctaattcgaggagtgtccgtgctt 43250118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 44; Significance: 5e-16; HSPs: 25)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 49 - 108
Target Start/End: Original strand, 24645541 - 24645600
Alignment:
Q  49 gacacgacatgtgtccgacaccaggacacgtctaatcggaggagtgtctgtgcttcatag 108  Q
    ||||||||| ||||||||||||| ||||||||||||| || |||||||||||||||||||    
T  24645541 gacacgacacgtgtccgacaccaagacacgtctaatccgaagagtgtctgtgcttcatag 24645600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 49 - 108
Target Start/End: Original strand, 7248429 - 7248488
Alignment:
Q  49 gacacgacatgtgtccgacaccaggacacgtctaatcggaggagtgtctgtgcttcatag 108  Q
    ||||| |||||||||||||||| ||||||||| |||| |||||||||| |||||||||||    
T  7248429 gacacaacatgtgtccgacaccgggacacgtcaaatccgaggagtgtccgtgcttcatag 7248488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 49 - 108
Target Start/End: Original strand, 10294178 - 10294237
Alignment:
Q  49 gacacgacatgtgtccgacaccaggacacgtctaatcggaggagtgtctgtgcttcatag 108  Q
    |||||||||||||||||| || |||||||  |||||| ||||||||||||||||||||||    
T  10294178 gacacgacatgtgtccgaaactaggacacagctaatctgaggagtgtctgtgcttcatag 10294237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 50 - 109
Target Start/End: Original strand, 3209460 - 3209519
Alignment:
Q  50 acacgacatgtgtccgacaccaggacacgtctaatcggaggagtgtctgtgcttcataga 109  Q
    |||||||| | |||||||||| ||||||| |||||| ||||||||| |||||||||||||    
T  3209460 acacgacacgcgtccgacacccggacacgcctaatccgaggagtgtttgtgcttcataga 3209519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 49 - 108
Target Start/End: Complemental strand, 10339113 - 10339054
Alignment:
Q  49 gacacgacatgtgtccgacaccaggacacgtctaatcggaggagtgtctgtgcttcatag 108  Q
    |||||||||  ||||||||||  ||||||| ||||||||||||||||| |||||||||||    
T  10339113 gacacgacacatgtccgacactgggacacgcctaatcggaggagtgtccgtgcttcatag 10339054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 49 - 107
Target Start/End: Complemental strand, 17841588 - 17841530
Alignment:
Q  49 gacacgacatgtgtccgacaccaggacacgtctaatcggaggagtgtctgtgcttcata 107  Q
    |||||||||||||||||||||   |||||| |||||| |||||||||| ||||||||||    
T  17841588 gacacgacatgtgtccgacactgagacacgcctaatccgaggagtgtccgtgcttcata 17841530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 53 - 107
Target Start/End: Original strand, 31959214 - 31959268
Alignment:
Q  53 cgacatgtgtccgacaccaggacacgtctaatcggaggagtgtctgtgcttcata 107  Q
    |||||||||||||||||| ||||||  |||||| |||||||||| ||||||||||    
T  31959214 cgacatgtgtccgacaccgggacacacctaatccgaggagtgtccgtgcttcata 31959268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 47 - 108
Target Start/End: Complemental strand, 8776969 - 8776908
Alignment:
Q  47 acgacacgacatgtgtccgacaccaggacacgtctaatcggaggagtgtctgtgcttcatag 108  Q
    ||||||||||| ||||||||||||  |||||  |||||| |||||||||| |||||||||||    
T  8776969 acgacacgacacgtgtccgacaccgagacacacctaatccgaggagtgtccgtgcttcatag 8776908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 65 - 106
Target Start/End: Complemental strand, 26178661 - 26178620
Alignment:
Q  65 gacaccaggacacgtctaatcggaggagtgtctgtgcttcat 106  Q
    |||||| ||||||| |||||||||||||||||||||||||||    
T  26178661 gacaccgggacacgcctaatcggaggagtgtctgtgcttcat 26178620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 49 - 110
Target Start/End: Original strand, 34595194 - 34595255
Alignment:
Q  49 gacacgacatgtgtccgacaccaggacacgtctaatcggaggagtgtctgtgcttcatagat 110  Q
    ||||||||| ||||| |||||| ||||||  |||||| |||||||||| |||||||||||||    
T  34595194 gacacgacacgtgtctgacaccgggacacacctaatccgaggagtgtccgtgcttcatagat 34595255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 49 - 109
Target Start/End: Original strand, 7378039 - 7378099
Alignment:
Q  49 gacacgacatgtgtccgacaccaggacacgtctaatcggaggagtgtctgtgcttcataga 109  Q
    |||||||||||  ||||||||| ||||||| |||||| ||| |||||| ||||||||||||    
T  7378039 gacacgacatgcatccgacaccgggacacggctaatctgagaagtgtccgtgcttcataga 7378099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 60 - 108
Target Start/End: Complemental strand, 13364693 - 13364645
Alignment:
Q  60 tgtccgacaccaggacacgtctaatcggaggagtgtctgtgcttcatag 108  Q
    |||| |||||||||||||||||| || || |||||||||||||||||||    
T  13364693 tgtctgacaccaggacacgtctattccgacgagtgtctgtgcttcatag 13364645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 49 - 105
Target Start/End: Complemental strand, 32978898 - 32978842
Alignment:
Q  49 gacacgacatgtgtccgacaccaggacacgtctaatcggaggagtgtctgtgcttca 105  Q
    |||||||||  ||||||||||| ||||||||||||||  ||||||||| ||||||||    
T  32978898 gacacgacacatgtccgacaccgggacacgtctaatccaaggagtgtccgtgcttca 32978842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 49 - 108
Target Start/End: Original strand, 4878003 - 4878061
Alignment:
Q  49 gacacgacatgtgtccgacaccaggacacgtctaatcggaggagtgtctgtgcttcatag 108  Q
    |||||||||  |||||||||| |||||||| |||||| |||||||||| |||||||||||    
T  4878003 gacacgacacatgtccgacac-aggacacgcctaatccgaggagtgtccgtgcttcatag 4878061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 49 - 108
Target Start/End: Complemental strand, 8365507 - 8365448
Alignment:
Q  49 gacacgacatgtgtccgacaccaggacacgtctaatcggaggagtgtctgtgcttcatag 108  Q
    ||||||||| |||||||||||  ||||||| |||||| ||||||| || |||||||||||    
T  8365507 gacacgacacgtgtccgacactgggacacgcctaatccgaggagtctccgtgcttcatag 8365448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 49 - 108
Target Start/End: Original strand, 9629454 - 9629513
Alignment:
Q  49 gacacgacatgtgtccgacaccaggacacgtctaatcggaggagtgtctgtgcttcatag 108  Q
    ||||| |||||||||||||||   ||||||||||||| ||||||||||  ||||||||||    
T  9629454 gacacaacatgtgtccgacactgagacacgtctaatccgaggagtgtccatgcttcatag 9629513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 49 - 108
Target Start/End: Original strand, 16833368 - 16833427
Alignment:
Q  49 gacacgacatgtgtccgacaccaggacacgtctaatcggaggagtgtctgtgcttcatag 108  Q
    ||||||||| | |||||||||||||||||  | |||| ||||||||||||| ||||||||    
T  16833368 gacacgacacgcgtccgacaccaggacacaccgaatccgaggagtgtctgtacttcatag 16833427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 49 - 108
Target Start/End: Complemental strand, 17327649 - 17327590
Alignment:
Q  49 gacacgacatgtgtccgacaccaggacacgtctaatcggaggagtgtctgtgcttcatag 108  Q
    ||||||||| ||||| |||||  ||||||| |||||| |||||||||| |||||||||||    
T  17327649 gacacgacacgtgtctgacacagggacacgcctaatccgaggagtgtccgtgcttcatag 17327590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 49 - 108
Target Start/End: Original strand, 28152158 - 28152217
Alignment:
Q  49 gacacgacatgtgtccgacaccaggacacgtctaatcggaggagtgtctgtgcttcatag 108  Q
    ||||||||| |||||||||||| ||||| | |||||| |||||||||  |||||||||||    
T  28152158 gacacgacacgtgtccgacaccgggacaggcctaatccgaggagtgttcgtgcttcatag 28152217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 49 - 111
Target Start/End: Complemental strand, 5000614 - 5000552
Alignment:
Q  49 gacacgacatgtgtccgacaccaggacacgtctaatcggaggagtgtctgtgcttcatagatg 111  Q
    |||||||||  | |||||||||||||||||||||||| || ||||||  ||||||||| ||||    
T  5000614 gacacgacacatatccgacaccaggacacgtctaatccgaagagtgttcgtgcttcattgatg 5000552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 49 - 111
Target Start/End: Complemental strand, 9107358 - 9107296
Alignment:
Q  49 gacacgacatgtgtccgacaccaggacacgtctaatcggaggagtgtctgtgcttcatagatg 111  Q
    ||||| || ||||||||||||| ||||||  |||||| |||||||| | ||||||||||||||    
T  9107358 gacacaacgtgtgtccgacaccgggacacacctaatccgaggagtgcccgtgcttcatagatg 9107296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 50 - 108
Target Start/End: Complemental strand, 34073335 - 34073278
Alignment:
Q  50 acacgacatgtgtccgacaccaggacacgtctaatcggaggagtgtctgtgcttcatag 108  Q
    |||||||||||| |||||||| |||||| ||||||  |||||||||| |||||||||||    
T  34073335 acacgacatgtg-ccgacaccgggacacctctaattcgaggagtgtccgtgcttcatag 34073278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 59 - 108
Target Start/End: Original strand, 9027237 - 9027286
Alignment:
Q  59 gtgtccgacaccaggacacgtctaatcggaggagtgtctgtgcttcatag 108  Q
    |||||||||||| ||||||| ||||||  |||||||| ||||||||||||    
T  9027237 gtgtccgacaccgggacacggctaatccaaggagtgtttgtgcttcatag 9027286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 49 - 113
Target Start/End: Original strand, 8714051 - 8714115
Alignment:
Q  49 gacacgacatgtgtccgacaccaggacacgtctaatcggaggagtgtctgtgcttcatagatggg 113  Q
    |||||||||  | ||||||| | ||||||| | |||| ||||||||||| |||||||||||||||    
T  8714051 gacacgacacatttccgacatcgggacacgcccaatccgaggagtgtctttgcttcatagatggg 8714115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 68 - 108
Target Start/End: Complemental strand, 20576613 - 20576573
Alignment:
Q  68 accaggacacgtctaatcggaggagtgtctgtgcttcatag 108  Q
    |||||| ||||||||||| ||| ||||||||||||||||||    
T  20576613 accaggtcacgtctaatccgagaagtgtctgtgcttcatag 20576573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 44; Significance: 5e-16; HSPs: 20)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 49 - 108
Target Start/End: Original strand, 9828115 - 9828174
Alignment:
Q  49 gacacgacatgtgtccgacaccaggacacgtctaatcggaggagtgtctgtgcttcatag 108  Q
    ||||||||| |||||||||||| |||||||||||||| |||||||||| |||||||||||    
T  9828115 gacacgacacgtgtccgacaccgggacacgtctaatccgaggagtgtccgtgcttcatag 9828174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 49 - 106
Target Start/End: Complemental strand, 1486703 - 1486646
Alignment:
Q  49 gacacgacatgtgtccgacaccaggacacgtctaatcggaggagtgtctgtgcttcat 106  Q
    ||||||||| |||||||||||| ||||||| |||||| ||||||||||||||||||||    
T  1486703 gacacgacacgtgtccgacaccgggacacgcctaatccgaggagtgtctgtgcttcat 1486646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 49 - 106
Target Start/End: Complemental strand, 16297280 - 16297223
Alignment:
Q  49 gacacgacatgtgtccgacaccaggacacgtctaatcggaggagtgtctgtgcttcat 106  Q
    |||||||| ||||||||||||||||||||| |||||| |||||||||| |||||||||    
T  16297280 gacacgacgtgtgtccgacaccaggacacgcctaatccgaggagtgtccgtgcttcat 16297223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 49 - 108
Target Start/End: Complemental strand, 5898265 - 5898206
Alignment:
Q  49 gacacgacatgtgtccgacaccaggacacgtctaatcggaggagtgtctgtgcttcatag 108  Q
    ||||||||| |||||| ||||| |||||||||||||| |||||||||| |||||| ||||    
T  5898265 gacacgacacgtgtccaacaccgggacacgtctaatccgaggagtgtccgtgctttatag 5898206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 49 - 108
Target Start/End: Original strand, 6427535 - 6427594
Alignment:
Q  49 gacacgacatgtgtccgacaccaggacacgtctaatcggaggagtgtctgtgcttcatag 108  Q
    ||||||||| |||||||||||| ||||||| |||||| || ||||||| |||||||||||    
T  6427535 gacacgacacgtgtccgacaccgggacacgcctaatctgatgagtgtccgtgcttcatag 6427594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 56 - 107
Target Start/End: Original strand, 10233323 - 10233374
Alignment:
Q  56 catgtgtccgacaccaggacacgtctaatcggaggagtgtctgtgcttcata 107  Q
    ||||||||||||||||||||||  |||||| |||||||||| ||||||||||    
T  10233323 catgtgtccgacaccaggacacacctaatcagaggagtgtccgtgcttcata 10233374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 49 - 108
Target Start/End: Original strand, 40917820 - 40917879
Alignment:
Q  49 gacacgacatgtgtccgacaccaggacacgtctaatcggaggagtgtctgtgcttcatag 108  Q
    ||||||||| |||||||||||| ||||||| |||||| ||||| |||| |||||||||||    
T  40917820 gacacgacacgtgtccgacaccgggacacgcctaatccgaggactgtccgtgcttcatag 40917879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 49 - 107
Target Start/End: Complemental strand, 40258932 - 40258874
Alignment:
Q  49 gacacgacatgtgtccgacaccaggacacgtctaatcggaggagtgtctgtgcttcata 107  Q
    |||||||||  ||||||||||||||||||| |||||| ||||||||||  |||||||||    
T  40258932 gacacgacacctgtccgacaccaggacacgcctaatccgaggagtgtccatgcttcata 40258874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 59 - 108
Target Start/End: Original strand, 2218298 - 2218347
Alignment:
Q  59 gtgtccgacaccaggacacgtctaatcggaggagtgtctgtgcttcatag 108  Q
    ||||||||||| |||||||| |||||| |||||||||| |||||||||||    
T  2218298 gtgtccgacactaggacacgcctaatctgaggagtgtccgtgcttcatag 2218347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 49 - 106
Target Start/End: Complemental strand, 42359448 - 42359391
Alignment:
Q  49 gacacgacatgtgtccgacaccaggacacgtctaatcggaggagtgtctgtgcttcat 106  Q
    |||| ||| ||||||||||||| ||||||| |||||| |||||||||| |||||||||    
T  42359448 gacaagacgtgtgtccgacaccgggacacgcctaatccgaggagtgtccgtgcttcat 42359391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 64 - 108
Target Start/End: Complemental strand, 22881611 - 22881567
Alignment:
Q  64 cgacaccaggacacgtctaatcggaggagtgtctgtgcttcatag 108  Q
    ||||||| |||||||||||||| |||||||||| |||||||||||    
T  22881611 cgacaccgggacacgtctaatccgaggagtgtccgtgcttcatag 22881567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 49 - 96
Target Start/End: Complemental strand, 6612159 - 6612112
Alignment:
Q  49 gacacgacatgtgtccgacaccaggacacgtctaatcggaggagtgtc 96  Q
    ||||||| |||||||||||||||||||||| ||||||  |||||||||    
T  6612159 gacacgatatgtgtccgacaccaggacacgcctaatccaaggagtgtc 6612112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 49 - 108
Target Start/End: Original strand, 17408762 - 17408821
Alignment:
Q  49 gacacgacatgtgtccgacaccaggacacgtctaatcggaggagtgtctgtgcttcatag 108  Q
    ||||||||| ||||||||||||| || ||  |||||| || |||||||||||||||||||    
T  17408762 gacacgacacgtgtccgacaccaagatacacctaatctgaagagtgtctgtgcttcatag 17408821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 53 - 112
Target Start/End: Complemental strand, 17831517 - 17831458
Alignment:
Q  53 cgacatgtgtccgacaccaggacacgtctaatcggaggagtgtctgtgcttcatagatgg 112  Q
    |||||||||||||||||| ||||||| ||||||  |||||||||  || |||||||||||    
T  17831517 cgacatgtgtccgacaccgggacacgcctaatcttaggagtgtccatgtttcatagatgg 17831458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 49 - 108
Target Start/End: Original strand, 37598891 - 37598950
Alignment:
Q  49 gacacgacatgtgtccgacaccaggacacgtctaatcggaggagtgtctgtgcttcatag 108  Q
    ||||||||| ||||||||||   ||||||| |||||| |||||||||| |||||||||||    
T  37598891 gacacgacacgtgtccgacaatgggacacgcctaatccgaggagtgtccgtgcttcatag 37598950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 49 - 107
Target Start/End: Original strand, 21032277 - 21032335
Alignment:
Q  49 gacacgacatgtgtccgacaccaggacacgtctaatcggaggagtgtctgtgcttcata 107  Q
    |||||||||||||||||||| |  || ||| ||||||  ||||||||||||||||||||    
T  21032277 gacacgacatgtgtccgacatcgagagacgcctaatccaaggagtgtctgtgcttcata 21032335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 70 - 108
Target Start/End: Complemental strand, 48450588 - 48450550
Alignment:
Q  70 caggacacgtctaatcggaggagtgtctgtgcttcatag 108  Q
    |||||||||||||||| |||||||||| |||||||||||    
T  48450588 caggacacgtctaatccgaggagtgtccgtgcttcatag 48450550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 59 - 108
Target Start/End: Complemental strand, 16164293 - 16164244
Alignment:
Q  59 gtgtccgacaccaggacacgtctaatcggaggagtgtctgtgcttcatag 108  Q
    |||||||||||||||||||| |||||| || |||||| |||| |||||||    
T  16164293 gtgtccgacaccaggacacgcctaatccgaagagtgtatgtgtttcatag 16164244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 48 - 108
Target Start/End: Original strand, 1815316 - 1815376
Alignment:
Q  48 cgacacgacatgtgtccgacaccaggacacgtctaatcggaggagtgtctgtgcttcatag 108  Q
    ||||||||||  ||||||||||| ||||||| |||||| |||||||| | ||| |||||||    
T  1815316 cgacacgacacatgtccgacaccgggacacgcctaatctgaggagtgaccgtgattcatag 1815376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 44482263 - 44482308
Alignment:
Q  1 tcagtgtaattatatgtgttggtgtcgtgtcgtcgtgtctgacacgac 48  Q
    ||||||||||||||||||| ||||||||||||  ||||| ||||||||    
T  44482263 tcagtgtaattatatgtgtcggtgtcgtgtcg--gtgtcggacacgac 44482308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 23)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 52 - 110
Target Start/End: Complemental strand, 32766928 - 32766870
Alignment:
Q  52 acgacatgtgtccgacaccaggacacgtctaatcggaggagtgtctgtgcttcatagat 110  Q
    |||||| |||||||||||||||| |||||||||| |||||||||| |||||||||||||    
T  32766928 acgacacgtgtccgacaccaggatacgtctaatctgaggagtgtccgtgcttcatagat 32766870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 49 - 105
Target Start/End: Complemental strand, 39268597 - 39268541
Alignment:
Q  49 gacacgacatgtgtccgacaccaggacacgtctaatcggaggagtgtctgtgcttca 105  Q
    |||||||||||||||||||||  ||||||| |||||| |||||||||| ||||||||    
T  39268597 gacacgacatgtgtccgacactgggacacgcctaatccgaggagtgtccgtgcttca 39268541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 49 - 108
Target Start/End: Original strand, 27932295 - 27932354
Alignment:
Q  49 gacacgacatgtgtccgacaccaggacacgtctaatcggaggagtgtctgtgcttcatag 108  Q
    ||||||||| ||||| |||||||||||||| |||||  ||||||||| ||||||||||||    
T  27932295 gacacgacacgtgtcggacaccaggacacgcctaattcgaggagtgtttgtgcttcatag 27932354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 49 - 108
Target Start/End: Original strand, 39698612 - 39698671
Alignment:
Q  49 gacacgacatgtgtccgacaccaggacacgtctaatcggaggagtgtctgtgcttcatag 108  Q
    |||||||||||| |||||||||  |||||| |||||| |||||||||| |||||||||||    
T  39698612 gacacgacatgtatccgacaccgagacacgcctaatccgaggagtgtccgtgcttcatag 39698671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 49 - 108
Target Start/End: Original strand, 43564941 - 43565000
Alignment:
Q  49 gacacgacatgtgtccgacaccaggacacgtctaatcggaggagtgtctgtgcttcatag 108  Q
    ||||||||||||||||||| || ||||||| |||||| ||| |||||| |||||||||||    
T  43564941 gacacgacatgtgtccgacgccgggacacgcctaatccgagaagtgtccgtgcttcatag 43565000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 207 - 280
Target Start/End: Original strand, 14584141 - 14584214
Alignment:
Q  207 ttttaagagagaaacatataacaattcattccaagtatctggtactccaggcaaacaccaatggctgcaatctt 280  Q
    ||||||||||||| |||| |  ||||| ||||| |||||||||||||| || || ||||||||||| |||||||    
T  14584141 ttttaagagagaagcatagagtaattcgttccaggtatctggtactcctggtaagcaccaatggctacaatctt 14584214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 60 - 109
Target Start/End: Complemental strand, 19820376 - 19820327
Alignment:
Q  60 tgtccgacaccaggacacgtctaatcggaggagtgtctgtgcttcataga 109  Q
    ||||||||||| ||||||| |||||| |||||||||| ||||||||||||    
T  19820376 tgtccgacaccgggacacgcctaatcagaggagtgtccgtgcttcataga 19820327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 60 - 108
Target Start/End: Complemental strand, 38464361 - 38464313
Alignment:
Q  60 tgtccgacaccaggacacgtctaatcggaggagtgtctgtgcttcatag 108  Q
    ||||||||||| ||||||  |||||| ||||||||||||||||||||||    
T  38464361 tgtccgacaccgggacacacctaatccgaggagtgtctgtgcttcatag 38464313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 49 - 109
Target Start/End: Original strand, 42893420 - 42893480
Alignment:
Q  49 gacacgacatgtgtccgacaccaggacacgtctaatcggaggagtgtctgtgcttcataga 109  Q
    ||||| ||| |||||||||||||||||||| |||||  ||||||||||  |||||||||||    
T  42893420 gacacaacacgtgtccgacaccaggacacgcctaatatgaggagtgtccatgcttcataga 42893480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 49 - 108
Target Start/End: Original strand, 11686009 - 11686068
Alignment:
Q  49 gacacgacatgtgtccgacaccaggacacgtctaatcggaggagtgtctgtgcttcatag 108  Q
    ||||||||| |||||| | |||| | |||| ||||||||||||||||| |||||||||||    
T  11686009 gacacgacacgtgtccaaaaccaaggcacggctaatcggaggagtgtccgtgcttcatag 11686068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 49 - 108
Target Start/End: Complemental strand, 16304425 - 16304366
Alignment:
Q  49 gacacgacatgtgtccgacaccaggacacgtctaatcggaggagtgtctgtgcttcatag 108  Q
    ||||||||| ||| ||||||||  ||||||||||||| ||||| |||| |||||||||||    
T  16304425 gacacgacacgtgcccgacaccgagacacgtctaatccgaggaatgtccgtgcttcatag 16304366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 49 - 108
Target Start/End: Complemental strand, 21576744 - 21576685
Alignment:
Q  49 gacacgacatgtgtccgacaccaggacacgtctaatcggaggagtgtctgtgcttcatag 108  Q
    ||||||||| ||||| |||||  ||||||| |||||| |||||||||| |||||||||||    
T  21576744 gacacgacacgtgtctgacactgggacacgcctaatccgaggagtgtccgtgcttcatag 21576685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 49 - 108
Target Start/End: Original strand, 30098397 - 30098456
Alignment:
Q  49 gacacgacatgtgtccgacaccaggacacgtctaatcggaggagtgtctgtgcttcatag 108  Q
    ||||||||| ||||| |||||||||||||  |||||| ||||| |||| |||||||||||    
T  30098397 gacacgacacgtgtcagacaccaggacacacctaatccgaggaatgtccgtgcttcatag 30098456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 49 - 107
Target Start/End: Original strand, 3966574 - 3966632
Alignment:
Q  49 gacacgacatgtgtccgacaccaggacacgtctaatcggaggagtgtctgtgcttcata 107  Q
    ||||| |||||||||| |||   |||||||||||||| |||||||||| ||||||||||    
T  3966574 gacacaacatgtgtccaacagagggacacgtctaatccgaggagtgtccgtgcttcata 3966632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 62 - 108
Target Start/End: Complemental strand, 19737467 - 19737421
Alignment:
Q  62 tccgacaccaggacacgtctaatcggaggagtgtctgtgcttcatag 108  Q
    |||||||||| ||||| ||||||| ||||||||| ||||||||||||    
T  19737467 tccgacaccaagacacatctaatctgaggagtgtttgtgcttcatag 19737421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 72 - 114
Target Start/End: Complemental strand, 22423800 - 22423758
Alignment:
Q  72 ggacacgtctaatcggaggagtgtctgtgcttcatagatggga 114  Q
    ||||||| |||||| |||||||||| |||||||||||||||||    
T  22423800 ggacacgcctaatccgaggagtgtccgtgcttcatagatggga 22423758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 59 - 108
Target Start/End: Original strand, 2436981 - 2437030
Alignment:
Q  59 gtgtccgacaccaggacacgtctaatcggaggagtgtctgtgcttcatag 108  Q
    ||||||||||||| |||||| |||||| |||||||||  |||||||||||    
T  2436981 gtgtccgacaccaagacacgcctaatccgaggagtgttcgtgcttcatag 2437030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 59 - 108
Target Start/End: Original strand, 14873592 - 14873641
Alignment:
Q  59 gtgtccgacaccaggacacgtctaatcggaggagtgtctgtgcttcatag 108  Q
    |||||| ||||| ||||||| |||||| |||||||||| |||||||||||    
T  14873592 gtgtccaacaccgggacacgcctaatccgaggagtgtccgtgcttcatag 14873641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 73 - 106
Target Start/End: Complemental strand, 18421812 - 18421779
Alignment:
Q  73 gacacgtctaatcggaggagtgtctgtgcttcat 106  Q
    ||||||||||||| ||||||||||||||||||||    
T  18421812 gacacgtctaatccgaggagtgtctgtgcttcat 18421779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 49 - 106
Target Start/End: Complemental strand, 23015983 - 23015926
Alignment:
Q  49 gacacgacatgtgtccgacaccaggacacgtctaatcggaggagtgtctgtgcttcat 106  Q
    ||||||||||||||||||||   ||||||| |||||| |||||||||| | |||||||    
T  23015983 gacacgacatgtgtccgacattgggacacgcctaatccgaggagtgtccgagcttcat 23015926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 60 - 108
Target Start/End: Original strand, 7677787 - 7677835
Alignment:
Q  60 tgtccgacaccaggacacgtctaatcggaggagtgtctgtgcttcatag 108  Q
    ||||||||||| ||||||| |||||| |||||| ||| |||||||||||    
T  7677787 tgtccgacaccgggacacgcctaatccgaggagagtcggtgcttcatag 7677835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 234 - 278
Target Start/End: Complemental strand, 15113399 - 15113355
Alignment:
Q  234 attccaagtatctggtactccaggcaaacaccaatggctgcaatc 278  Q
    |||||||||||| || || ||||||| ||||||||||||||||||    
T  15113399 attccaagtatcaggaacaccaggcagacaccaatggctgcaatc 15113355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 49 - 109
Target Start/End: Original strand, 31084388 - 31084448
Alignment:
Q  49 gacacgacatgtgtccgacaccaggacacgtctaatcggaggagtgtctgtgcttcataga 109  Q
    ||||||||| |||||||||||  ||||| | |||||| |||||||||| ||| ||||||||    
T  31084388 gacacgacacgtgtccgacactgggacatgcctaatccgaggagtgtccgtggttcataga 31084448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 31)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 53 - 108
Target Start/End: Complemental strand, 18513230 - 18513175
Alignment:
Q  53 cgacatgtgtccgacaccaggacacgtctaatcggaggagtgtctgtgcttcatag 108  Q
    |||| ||||||||||||||||||||| |||||| |||||||||| |||||||||||    
T  18513230 cgacgtgtgtccgacaccaggacacgcctaatctgaggagtgtccgtgcttcatag 18513175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 49 - 108
Target Start/End: Complemental strand, 23292985 - 23292926
Alignment:
Q  49 gacacgacatgtgtccgacaccaggacacgtctaatcggaggagtgtctgtgcttcatag 108  Q
    ||||||||| |||||||||||| ||||||| |||||| |||||||||| |||||||||||    
T  23292985 gacacgacacgtgtccgacaccgggacacgcctaatccgaggagtgtccgtgcttcatag 23292926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 49 - 108
Target Start/End: Complemental strand, 24613689 - 24613630
Alignment:
Q  49 gacacgacatgtgtccgacaccaggacacgtctaatcggaggagtgtctgtgcttcatag 108  Q
    ||||||||| ||||| |||||||||||||||||||||  ||||||||| |||||||||||    
T  24613689 gacacgacacgtgtctgacaccaggacacgtctaatcctaggagtgtccgtgcttcatag 24613630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 49 - 107
Target Start/End: Complemental strand, 3947760 - 3947702
Alignment:
Q  49 gacacgacatgtgtccgacaccaggacacgtctaatcggaggagtgtctgtgcttcata 107  Q
    ||||||||| |||||||||||||||||||  |||||| |||||||||| ||||||||||    
T  3947760 gacacgacacgtgtccgacaccaggacacacctaatccgaggagtgtccgtgcttcata 3947702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 49 - 107
Target Start/End: Complemental strand, 14465064 - 14465006
Alignment:
Q  49 gacacgacatgtgtccgacaccaggacacgtctaatcggaggagtgtctgtgcttcata 107  Q
    ||||||||| |||| ||||||  |||||||||||||| |||||||||| ||||||||||    
T  14465064 gacacgacacgtgttcgacactgggacacgtctaatctgaggagtgtccgtgcttcata 14465006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 50 - 108
Target Start/End: Complemental strand, 30103355 - 30103297
Alignment:
Q  50 acacgacatgtgtccgacaccaggacacgtctaatcggaggagtgtctgtgcttcatag 108  Q
    ||||||||| |||| |||| |||||||| ||||||| ||||||||||| ||||||||||    
T  30103355 acacgacatatgtctgacatcaggacacatctaatccgaggagtgtctctgcttcatag 30103297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 58 - 107
Target Start/End: Complemental strand, 17425397 - 17425348
Alignment:
Q  58 tgtgtccgacaccaggacacgtctaatcggaggagtgtctgtgcttcata 107  Q
    |||||| ||||| |||||||| |||||| |||||||||||||||||||||    
T  17425397 tgtgtcagacacaaggacacgcctaatccgaggagtgtctgtgcttcata 17425348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 61 - 110
Target Start/End: Original strand, 37203324 - 37203373
Alignment:
Q  61 gtccgacaccaggacacgtctaatcggaggagtgtctgtgcttcatagat 110  Q
    |||||||||| |||||||||||||| ||| |||||| |||||||||||||    
T  37203324 gtccgacaccgggacacgtctaatccgagaagtgtccgtgcttcatagat 37203373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 50 - 110
Target Start/End: Complemental strand, 715603 - 715543
Alignment:
Q  50 acacgacatgtgtccgacaccaggacacgtctaatcggaggagtgtctgtgcttcatagat 110  Q
    ||||||||  ||||||||||  ||||||| |||||| |||||||||| |||||||||||||    
T  715603 acacgacacatgtccgacacagggacacgcctaatccgaggagtgtccgtgcttcatagat 715543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 50 - 110
Target Start/End: Complemental strand, 752929 - 752869
Alignment:
Q  50 acacgacatgtgtccgacaccaggacacgtctaatcggaggagtgtctgtgcttcatagat 110  Q
    ||||||||  ||||||||||  ||||||| |||||| |||||||||| |||||||||||||    
T  752929 acacgacacatgtccgacacagggacacgcctaatccgaggagtgtccgtgcttcatagat 752869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 60 - 108
Target Start/End: Original strand, 17876237 - 17876285
Alignment:
Q  60 tgtccgacaccaggacacgtctaatcggaggagtgtctgtgcttcatag 108  Q
    ||||||||||||||||||  ||||||  |||||||||||||||||||||    
T  17876237 tgtccgacaccaggacacacctaatccaaggagtgtctgtgcttcatag 17876285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 59 - 107
Target Start/End: Original strand, 40965341 - 40965389
Alignment:
Q  59 gtgtccgacaccaggacacgtctaatcggaggagtgtctgtgcttcata 107  Q
    ||||||||||||| |||||| |||||| |||||||||| ||||||||||    
T  40965341 gtgtccgacaccaagacacgcctaatctgaggagtgtcggtgcttcata 40965389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 54 - 110
Target Start/End: Original strand, 42640589 - 42640645
Alignment:
Q  54 gacatgtgtccgacaccaggacacgtctaatcggaggagtgtctgtgcttcatagat 110  Q
    |||| ||||||| |||||||||||| |||||| ||||||| || |||||||||||||    
T  42640589 gacacgtgtccggcaccaggacacgcctaatccgaggagtttccgtgcttcatagat 42640645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 60 - 112
Target Start/End: Original strand, 47264068 - 47264120
Alignment:
Q  60 tgtccgacaccaggacacgtctaatcggaggagtgtctgtgcttcatagatgg 112  Q
    |||| |||||||||||||| |||||| || ||| |||||||||||||||||||    
T  47264068 tgtctgacaccaggacacgcctaatccgaagagcgtctgtgcttcatagatgg 47264120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 49 - 108
Target Start/End: Complemental strand, 8423717 - 8423658
Alignment:
Q  49 gacacgacatgtgtccgacaccaggacacgtctaatcggaggagtgtctgtgcttcatag 108  Q
    |||||||||  ||||||||||| ||||||| |||||||||| |||||| |||| ||||||    
T  8423717 gacacgacagctgtccgacaccgggacacgcctaatcggagaagtgtccgtgcgtcatag 8423658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 49 - 108
Target Start/End: Complemental strand, 11650737 - 11650678
Alignment:
Q  49 gacacgacatgtgtccgacaccaggacacgtctaatcggaggagtgtctgtgcttcatag 108  Q
    |||||||||||| ||||||| ||| |||||||||||| || ||||||| || ||||||||    
T  11650737 gacacgacatgtatccgacaacagaacacgtctaatccgaagagtgtccgttcttcatag 11650678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 49 - 108
Target Start/End: Complemental strand, 12895273 - 12895214
Alignment:
Q  49 gacacgacatgtgtccgacaccaggacacgtctaatcggaggagtgtctgtgcttcatag 108  Q
    |||||||||||| ||||||| | ||||||| |||||| |||||||||  |||||||||||    
T  12895273 gacacgacatgtatccgacatcgggacacgcctaatccgaggagtgttcgtgcttcatag 12895214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 1 - 108
Target Start/End: Complemental strand, 22234916 - 22234819
Alignment:
Q  1 tcagtgtaattatatgtgttggtgtcgtgtcgtcgtgtctgacacgacgacacgacatgtgtccgacaccaggacacgtctaatcggaggagtgtctgtg 100  Q
    ||||||||||| ||||||| ||||||||||||  ||||||        ||||||||| |||||||||||||||||||  |||||| ||| |||||  |||    
T  22234916 tcagtgtaattctatgtgtcggtgtcgtgtcg--gtgtct--------gacacgacacgtgtccgacaccaggacacagctaatccgagaagtgttcgtg 22234827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 59 - 106
Target Start/End: Complemental strand, 22440606 - 22440559
Alignment:
Q  59 gtgtccgacaccaggacacgtctaatcggaggagtgtctgtgcttcat 106  Q
    ||||||||||| |||||||| |||||| |||||||||| |||||||||    
T  22440606 gtgtccgacactaggacacgcctaatccgaggagtgtccgtgcttcat 22440559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 59 - 110
Target Start/End: Original strand, 24343583 - 24343634
Alignment:
Q  59 gtgtccgacaccaggacacgtctaatcggaggagtgtctgtgcttcatagat 110  Q
    |||||||||||| ||||||| ||| || |||||||||| |||||||||||||    
T  24343583 gtgtccgacaccgggacacgcctattctgaggagtgtccgtgcttcatagat 24343634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 49 - 107
Target Start/End: Complemental strand, 30982866 - 30982808
Alignment:
Q  49 gacacgacatgtgtccgacaccaggacacgtctaatcggaggagtgtctgtgcttcata 107  Q
    ||||||||| |||||||||||| ||||||| ||||||  | ||||||| ||||||||||    
T  30982866 gacacgacacgtgtccgacaccgggacacgcctaatccaaagagtgtccgtgcttcata 30982808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 49 - 110
Target Start/End: Original strand, 29205528 - 29205589
Alignment:
Q  49 gacacgacatgtgtccgacaccaggacacgtctaatcggaggagtgtctgtgcttcatagat 110  Q
    |||||||||  ||||||||||  ||||||| |||||| |||||||||  |||||||||||||    
T  29205528 gacacgacacatgtccgacactgggacacgcctaatccgaggagtgttcgtgcttcatagat 29205589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 49 - 110
Target Start/End: Original strand, 36635390 - 36635451
Alignment:
Q  49 gacacgacatgtgtccgacaccaggacacgtctaatcggaggagtgtctgtgcttcatagat 110  Q
    ||||||||| | ||| |||||| ||||||| |||||| || ||||||| |||||||||||||    
T  36635390 gacacgacacgcgtcagacaccgggacacgcctaatccgaagagtgtccgtgcttcatagat 36635451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 59 - 103
Target Start/End: Complemental strand, 3712502 - 3712458
Alignment:
Q  59 gtgtccgacaccaggacacgtctaatcggaggagtgtctgtgctt 103  Q
    |||||||||||| ||||||| |||||| |||||||||| ||||||    
T  3712502 gtgtccgacaccgggacacggctaatctgaggagtgtccgtgctt 3712458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 60 - 108
Target Start/End: Complemental strand, 11596345 - 11596297
Alignment:
Q  60 tgtccgacaccaggacacgtctaatcggaggagtgtctgtgcttcatag 108  Q
    ||||||||| | ||||||| |||||| |||||||||| |||||||||||    
T  11596345 tgtccgacatcgggacacgcctaatctgaggagtgtccgtgcttcatag 11596297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 4 - 32
Target Start/End: Complemental strand, 15659783 - 15659755
Alignment:
Q  4 gtgtaattatatgtgttggtgtcgtgtcg 32  Q
    |||||||||||||||||||||||||||||    
T  15659783 gtgtaattatatgtgttggtgtcgtgtcg 15659755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 60 - 108
Target Start/End: Original strand, 16184902 - 16184950
Alignment:
Q  60 tgtccgacaccaggacacgtctaatcggaggagtgtctgtgcttcatag 108  Q
    ||||||||||  ||||||| |||||| ||||||||| ||||||||||||    
T  16184902 tgtccgacactgggacacgcctaatccgaggagtgtttgtgcttcatag 16184950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 72 - 108
Target Start/End: Original strand, 30299012 - 30299048
Alignment:
Q  72 ggacacgtctaatcggaggagtgtctgtgcttcatag 108  Q
    |||||||||||||| |||||||||| |||||||||||    
T  30299012 ggacacgtctaatccgaggagtgtccgtgcttcatag 30299048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 72 - 108
Target Start/End: Original strand, 30327880 - 30327916
Alignment:
Q  72 ggacacgtctaatcggaggagtgtctgtgcttcatag 108  Q
    |||||||||||||| |||||||||| |||||||||||    
T  30327880 ggacacgtctaatccgaggagtgtccgtgcttcatag 30327916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 49 - 109
Target Start/End: Complemental strand, 34306803 - 34306743
Alignment:
Q  49 gacacgacatgtgtccgacaccaggacacgtctaatcggaggagtgtctgtgcttcataga 109  Q
    ||||||||| ||||||||||||  |||||| |||||| ||||| |||  ||||||||||||    
T  34306803 gacacgacacgtgtccgacaccgagacacgcctaatctgaggaatgttcgtgcttcataga 34306743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 60 - 108
Target Start/End: Complemental strand, 40699935 - 40699887
Alignment:
Q  60 tgtccgacaccaggacacgtctaatcggaggagtgtctgtgcttcatag 108  Q
    |||||||||||||||||| | |||||  |||||||| ||||||||||||    
T  40699935 tgtccgacaccaggacacatgtaatcccaggagtgtttgtgcttcatag 40699887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 26)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 49 - 108
Target Start/End: Complemental strand, 34185111 - 34185052
Alignment:
Q  49 gacacgacatgtgtccgacaccaggacacgtctaatcggaggagtgtctgtgcttcatag 108  Q
    |||| ||||||||||||||||| ||||||| |||||| |||||||||| |||||||||||    
T  34185111 gacaagacatgtgtccgacaccgggacacgcctaatccgaggagtgtccgtgcttcatag 34185052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 49 - 108
Target Start/End: Original strand, 27505311 - 27505370
Alignment:
Q  49 gacacgacatgtgtccgacaccaggacacgtctaatcggaggagtgtctgtgcttcatag 108  Q
    ||||||||| |||||||||||| ||||| | |||||| |||||||||| |||||||||||    
T  27505311 gacacgacacgtgtccgacaccgggacatgcctaatccgaggagtgtccgtgcttcatag 27505370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 49 - 108
Target Start/End: Original strand, 55401135 - 55401194
Alignment:
Q  49 gacacgacatgtgtccgacaccaggacacgtctaatcggaggagtgtctgtgcttcatag 108  Q
    ||||||||| ||||||||||||  |||||| |||||| |||||||||| |||||||||||    
T  55401135 gacacgacacgtgtccgacaccgagacacgcctaatccgaggagtgtccgtgcttcatag 55401194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 49 - 106
Target Start/End: Complemental strand, 4987279 - 4987222
Alignment:
Q  49 gacacgacatgtgtccgacaccaggacacgtctaatcggaggagtgtctgtgcttcat 106  Q
    ||||||||| |||||||||||| ||||||| |||||| |||||||||| || ||||||    
T  4987279 gacacgacacgtgtccgacaccgggacacgcctaatccgaggagtgtccgtacttcat 4987222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 59 - 108
Target Start/End: Complemental strand, 17005597 - 17005548
Alignment:
Q  59 gtgtccgacaccaggacacgtctaatcggaggagtgtctgtgcttcatag 108  Q
    ||||| ||||||||||||| ||||||| ||||||||| ||||||||||||    
T  17005597 gtgtctgacaccaggacacctctaatccgaggagtgtttgtgcttcatag 17005548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 49 - 110
Target Start/End: Original strand, 20503525 - 20503586
Alignment:
Q  49 gacacgacatgtgtccgacaccaggacacgtctaatcggaggagtgtctgtgcttcatagat 110  Q
    |||||||||  |||| |||||| ||||||| |||||| |||||||||| |||||||||||||    
T  20503525 gacacgacacatgtctgacaccgggacacgcctaatccgaggagtgtccgtgcttcatagat 20503586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 60 - 108
Target Start/End: Original strand, 28812597 - 28812645
Alignment:
Q  60 tgtccgacaccaggacacgtctaatcggaggagtgtctgtgcttcatag 108  Q
    ||||||||| ||||||||| |||||| ||||||||||||||| ||||||    
T  28812597 tgtccgacagcaggacacgcctaatccgaggagtgtctgtgcctcatag 28812645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 59 - 110
Target Start/End: Original strand, 11610579 - 11610630
Alignment:
Q  59 gtgtccgacaccaggacacgtctaatcggaggagtgtctgtgcttcatagat 110  Q
    |||||||||| | ||||||| |||||| |||||||||| |||||||||||||    
T  11610579 gtgtccgacatcgggacacgcctaatctgaggagtgtccgtgcttcatagat 11610630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 59 - 106
Target Start/End: Complemental strand, 24205030 - 24204983
Alignment:
Q  59 gtgtccgacaccaggacacgtctaatcggaggagtgtctgtgcttcat 106  Q
    |||||||||||||||||||| |||||  |||||||||| |||||||||    
T  24205030 gtgtccgacaccaggacacgcctaattcgaggagtgtccgtgcttcat 24204983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 59 - 106
Target Start/End: Original strand, 25775577 - 25775624
Alignment:
Q  59 gtgtccgacaccaggacacgtctaatcggaggagtgtctgtgcttcat 106  Q
    |||||||||||||||||||| |||||| |||||||||  |||||||||    
T  25775577 gtgtccgacaccaggacacgcctaatccgaggagtgttcgtgcttcat 25775624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 49 - 108
Target Start/End: Complemental strand, 40993334 - 40993275
Alignment:
Q  49 gacacgacatgtgtccgacaccaggacacgtctaatcggaggagtgtctgtgcttcatag 108  Q
    |||||||||  ||||||||||| ||||||| |||||| ||||||||||  ||||||||||    
T  40993334 gacacgacacatgtccgacaccgggacacgcctaatccgaggagtgtccatgcttcatag 40993275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 49 - 108
Target Start/End: Complemental strand, 41961638 - 41961579
Alignment:
Q  49 gacacgacatgtgtccgacaccaggacacgtctaatcggaggagtgtctgtgcttcatag 108  Q
    ||||||||| |||||||||||  ||||||| |||||| ||| |||||| |||||||||||    
T  41961638 gacacgacacgtgtccgacactgggacacgcctaatccgagaagtgtccgtgcttcatag 41961579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 58 - 100
Target Start/End: Original strand, 21720841 - 21720883
Alignment:
Q  58 tgtgtccgacaccaggacacgtctaatcggaggagtgtctgtg 100  Q
    ||||||||||||| |||||||||||||| || |||||||||||    
T  21720841 tgtgtccgacaccgggacacgtctaatccgatgagtgtctgtg 21720883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 65 - 107
Target Start/End: Original strand, 34910393 - 34910435
Alignment:
Q  65 gacaccaggacacgtctaatcggaggagtgtctgtgcttcata 107  Q
    |||||| |||||||||||||| |||||||||| ||||||||||    
T  34910393 gacaccgggacacgtctaatccgaggagtgtccgtgcttcata 34910435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 58 - 107
Target Start/End: Original strand, 1389907 - 1389956
Alignment:
Q  58 tgtgtccgacaccaggacacgtctaatcggaggagtgtctgtgcttcata 107  Q
    ||||||||||||||||||| | ||||||  ||||||||| ||||||||||    
T  1389907 tgtgtccgacaccaggacatgcctaatccaaggagtgtccgtgcttcata 1389956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 50 - 107
Target Start/End: Complemental strand, 16000008 - 15999951
Alignment:
Q  50 acacgacatgtgtccgacaccaggacacgtctaatcggaggagtgtctgtgcttcata 107  Q
    |||||||| |||||||||||| ||||||| ||||||  ||||||||| |||| |||||    
T  16000008 acacgacacgtgtccgacaccgggacacgcctaatccaaggagtgtccgtgcatcata 15999951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 58 - 107
Target Start/End: Original strand, 25365531 - 25365580
Alignment:
Q  58 tgtgtccgacaccaggacacgtctaatcggaggagtgtctgtgcttcata 107  Q
    ||||| ||||||||||||||| |||||| ||||| ||| |||||||||||    
T  25365531 tgtgttcgacaccaggacacgcctaatctgaggaatgtatgtgcttcata 25365580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 226 - 279
Target Start/End: Complemental strand, 25962770 - 25962717
Alignment:
Q  226 aacaattcattccaagtatctggtactccaggcaaacaccaatggctgcaatct 279  Q
    |||||||||||||||||||| ||||  ||||| | ||||||||| |||||||||    
T  25962770 aacaattcattccaagtatcaggtaaaccaggaagacaccaatgactgcaatct 25962717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 60 - 109
Target Start/End: Original strand, 33359826 - 33359875
Alignment:
Q  60 tgtccgacaccaggacacgtctaatcggaggagtgtctgtgcttcataga 109  Q
    ||||||||| | ||||||||||||| ||||||||||| ||||||| ||||    
T  33359826 tgtccgacatcgggacacgtctaattggaggagtgtccgtgcttcgtaga 33359875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 59 - 108
Target Start/End: Original strand, 40052382 - 40052431
Alignment:
Q  59 gtgtccgacaccaggacacgtctaatcggaggagtgtctgtgcttcatag 108  Q
    |||||||||||| ||||||| |||||| |||||||||  |||||||||||    
T  40052382 gtgtccgacaccgggacacgcctaatccgaggagtgttcgtgcttcatag 40052431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 59 - 103
Target Start/End: Original strand, 1509637 - 1509681
Alignment:
Q  59 gtgtccgacaccaggacacgtctaatcggaggagtgtctgtgctt 103  Q
    |||||||||||| | ||||| ||||||||||||||||| ||||||    
T  1509637 gtgtccgacaccggtacacgcctaatcggaggagtgtccgtgctt 1509681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 49 - 101
Target Start/End: Original strand, 3631744 - 3631796
Alignment:
Q  49 gacacgacatgtgtccgacaccaggacacgtctaatcggaggagtgtctgtgc 101  Q
    |||||||||  ||||||||||||||||||| ||| || |||||||||| ||||    
T  3631744 gacacgacacatgtccgacaccaggacacgcctagtccgaggagtgtccgtgc 3631796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 56 - 108
Target Start/End: Original strand, 10455863 - 10455915
Alignment:
Q  56 catgtgtccgacaccaggacacgtctaatcggaggagtgtctgtgcttcatag 108  Q
    ||||||||||||||  |||||||| |||||  |||||||| ||||||||||||    
T  10455863 catgtgtccgacactgggacacgtttaatccaaggagtgtatgtgcttcatag 10455915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 49 - 109
Target Start/End: Original strand, 11252036 - 11252096
Alignment:
Q  49 gacacgacatgtgtccgacaccaggacacgtctaatcggaggagtgtctgtgcttcataga 109  Q
    ||||| ||| ||||||| || | | ||||| |||||| |||||||||||||||||||||||    
T  11252036 gacacaacacgtgtccggcatcggaacacgcctaatccgaggagtgtctgtgcttcataga 11252096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 16192776 - 16192731
Alignment:
Q  1 tcagtgtaattatatgtgttggtgtcgtgtcgtcgtgtctgacacgac 48  Q
    ||||||||||||||||||||| ||||||||||  ||||| ||||||||    
T  16192776 tcagtgtaattatatgtgttgatgtcgtgtcg--gtgtcagacacgac 16192731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 63 - 107
Target Start/End: Original strand, 25211604 - 25211648
Alignment:
Q  63 ccgacaccaggacacgtctaatcggaggagtgtctgtgcttcata 107  Q
    |||||||||||||||| |||||| ||| ||||| |||||||||||    
T  25211604 ccgacaccaggacacgcctaatctgagaagtgtttgtgcttcata 25211648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 18)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 49 - 111
Target Start/End: Original strand, 26769582 - 26769644
Alignment:
Q  49 gacacgacatgtgtccgacaccaggacacgtctaatcggaggagtgtctgtgcttcatagatg 111  Q
    ||||||||| |||||||||||  ||||||| |||||| |||||||||| ||||||||||||||    
T  26769582 gacacgacacgtgtccgacactgggacacgcctaatccgaggagtgtccgtgcttcatagatg 26769644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 49 - 108
Target Start/End: Original strand, 27084329 - 27084388
Alignment:
Q  49 gacacgacatgtgtccgacaccaggacacgtctaatcggaggagtgtctgtgcttcatag 108  Q
    ||||||||| |||||| |||||  |||||| |||||||||||||||||| ||||||||||    
T  27084329 gacacgacacgtgtccaacaccgagacacgcctaatcggaggagtgtctctgcttcatag 27084388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 49 - 106
Target Start/End: Complemental strand, 2438718 - 2438661
Alignment:
Q  49 gacacgacatgtgtccgacaccaggacacgtctaatcggaggagtgtctgtgcttcat 106  Q
    |||||||||  ||||||||||| ||||||| |||||| |||||||||| |||||||||    
T  2438718 gacacgacacatgtccgacaccgggacacgcctaatccgaggagtgtccgtgcttcat 2438661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 51 - 108
Target Start/End: Complemental strand, 21782801 - 21782744
Alignment:
Q  51 cacgacatgtgtccgacaccaggacacgtctaatcggaggagtgtctgtgcttcatag 108  Q
    ||||||| |||||| ||||| |||||||||||||| | |||||||| |||||||||||    
T  21782801 cacgacacgtgtccaacaccgggacacgtctaatctgtggagtgtccgtgcttcatag 21782744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 55 - 112
Target Start/End: Complemental strand, 24975308 - 24975251
Alignment:
Q  55 acatgtgtccgacaccaggacacgtctaatcggaggagtgtctgtgcttcatagatgg 112  Q
    |||||||||||||||  |||||  ||||||| |||||||||| |||||||||||||||    
T  24975308 acatgtgtccgacactgggacaaatctaatctgaggagtgtccgtgcttcatagatgg 24975251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 49 - 107
Target Start/End: Original strand, 35449567 - 35449627
Alignment:
Q  49 gacacgacatgtgtccgacaccaggacacgtct--aatcggaggagtgtctgtgcttcata 107  Q
    |||||||||  ||||||||||||| ||||||||  |||| |||||||||||||||||||||    
T  35449567 gacacgacacatgtccgacaccagaacacgtctctaatccgaggagtgtctgtgcttcata 35449627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 59 - 108
Target Start/End: Original strand, 37419824 - 37419873
Alignment:
Q  59 gtgtccgacaccaggacacgtctaatcggaggagtgtctgtgcttcatag 108  Q
    |||||||||||| ||||||| |||||| |||||||||| |||||||||||    
T  37419824 gtgtccgacaccgggacacgcctaatccgaggagtgtccgtgcttcatag 37419873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 58 - 109
Target Start/End: Complemental strand, 10535735 - 10535684
Alignment:
Q  58 tgtgtccgacaccaggacacgtctaatcggaggagtgtctgtgcttcataga 109  Q
    |||||| |||||||||||||| |||||| |||||||||  ||||||||||||    
T  10535735 tgtgtctgacaccaggacacgcctaatccgaggagtgttcgtgcttcataga 10535684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 49 - 108
Target Start/End: Complemental strand, 18841012 - 18840953
Alignment:
Q  49 gacacgacatgtgtccgacaccaggacacgtctaatcggaggagtgtctgtgcttcatag 108  Q
    |||||||||  ||||||||||| ||||||  |||||| |||||||||| |||||||||||    
T  18841012 gacacgacacatgtccgacaccgggacacacctaatccgaggagtgtccgtgcttcatag 18840953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 49 - 108
Target Start/End: Complemental strand, 38117158 - 38117099
Alignment:
Q  49 gacacgacatgtgtccgacaccaggacacgtctaatcggaggagtgtctgtgcttcatag 108  Q
    ||||| ||| |||||||||||| ||||||| |||||| |||| ||||| |||||||||||    
T  38117158 gacacaacacgtgtccgacaccgggacacgcctaatccgaggggtgtccgtgcttcatag 38117099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 49 - 108
Target Start/End: Complemental strand, 42511381 - 42511322
Alignment:
Q  49 gacacgacatgtgtccgacaccaggacacgtctaatcggaggagtgtctgtgcttcatag 108  Q
    ||||| ||| |||||||||||  ||||||| |||||| |||||||||| |||||||||||    
T  42511381 gacacaacacgtgtccgacacagggacacggctaatccgaggagtgtccgtgcttcatag 42511322  T

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Target: chr2; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 2 - 32
Target Start/End: Complemental strand, 18054828 - 18054798
Alignment:
Q  2 cagtgtaattatatgtgttggtgtcgtgtcg 32  Q
    |||||||||||||||||||||||||||||||    
T  18054828 cagtgtaattatatgtgttggtgtcgtgtcg 18054798  T

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Target: chr2; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 49 - 107
Target Start/End: Original strand, 28596529 - 28596587
Alignment:
Q  49 gacacgacatgtgtccgacaccaggacacgtctaatcggaggagtgtctgtgcttcata 107  Q
    ||||||||| |||||||||||  ||||||  |||||| |||||||||| ||||||||||    
T  28596529 gacacgacacgtgtccgacactcggacactcctaatccgaggagtgtccgtgcttcata 28596587  T

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Target: chr2; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 50 - 108
Target Start/End: Original strand, 28677975 - 28678033
Alignment:
Q  50 acacgacatgtgtccgacaccaggacacgtctaatcggaggagtgtctgtgcttcatag 108  Q
    |||||||| |||||||||||  ||||||| || | ||||||||||||| ||||||||||    
T  28677975 acacgacaagtgtccgacacagggacacggctgaccggaggagtgtctatgcttcatag 28678033  T

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Target: chr2; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 49 - 107
Target Start/End: Original strand, 44860391 - 44860449
Alignment:
Q  49 gacacgacatgtgtccgacaccaggacacgtctaatcggaggagtgtctgtgcttcata 107  Q
    |||||||||||||||||||| | ||||||  |||||  |||||||||| ||||||||||    
T  44860391 gacacgacatgtgtccgacatcgggacacacctaattcgaggagtgtccgtgcttcata 44860449  T

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Target: chr2; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 60 - 109
Target Start/End: Complemental strand, 11223841 - 11223792
Alignment:
Q  60 tgtccgacaccaggacacgtctaatcggaggagtgtctgtgcttcataga 109  Q
    |||| |||||| ||||||| |||||| |||||||||| ||||||||||||    
T  11223841 tgtctgacaccgggacacgcctaatctgaggagtgtccgtgcttcataga 11223792  T

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Target: chr2; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 59 - 108
Target Start/End: Original strand, 38919288 - 38919336
Alignment:
Q  59 gtgtccgacaccaggacacgtctaatcggaggagtgtctgtgcttcatag 108  Q
    ||||||||||| ||||||||||||||| || |||||| ||||||||||||    
T  38919288 gtgtccgacac-aggacacgtctaatctgaagagtgtttgtgcttcatag 38919336  T

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Target: chr2; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 35056901 - 35056946
Alignment:
Q  1 tcagtgtaattatatgtgttggtgtcgtgtcgtcgtgtctgacacgac 48  Q
    ||||||||||||||||||| ||||||||||||  ||||| ||||||||    
T  35056901 tcagtgtaattatatgtgtcggtgtcgtgtcg--gtgtcggacacgac 35056946  T

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Target: scaffold0003 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 49 - 110
Target Start/End: Original strand, 241665 - 241726
Alignment:
Q  49 gacacgacatgtgtccgacaccaggacacgtctaatcggaggagtgtctgtgcttcatagat 110  Q
    ||||||||| |||||||||||| ||||||| |||||| ||| |||||| |||||||||||||    
T  241665 gacacgacacgtgtccgacaccgggacacgcctaatccgagaagtgtccgtgcttcatagat 241726  T

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Target: scaffold0003; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 59 - 108
Target Start/End: Complemental strand, 236963 - 236914
Alignment:
Q  59 gtgtccgacaccaggacacgtctaatcggaggagtgtctgtgcttcatag 108  Q
    ||||| |||||| ||||||  |||||| ||||||||||||||||||||||    
T  236963 gtgtctgacaccgggacacacctaatctgaggagtgtctgtgcttcatag 236914  T

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Target: scaffold0019 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold0019
Description:

Target: scaffold0019; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 49 - 108
Target Start/End: Original strand, 71796 - 71855
Alignment:
Q  49 gacacgacatgtgtccgacaccaggacacgtctaatcggaggagtgtctgtgcttcatag 108  Q
    ||||| ||| |||||||||||| ||||||| |||||| |||||||||| |||||||||||    
T  71796 gacacaacacgtgtccgacaccgggacacgactaatccgaggagtgtcggtgcttcatag 71855  T

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Target: scaffold0053 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: scaffold0053
Description:

Target: scaffold0053; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 49 - 110
Target Start/End: Original strand, 8858 - 8919
Alignment:
Q  49 gacacgacatgtgtccgacaccaggacacgtctaatcggaggagtgtctgtgcttcatagat 110  Q
    ||||||||| ||||||||||||  |||||| |||||| ||||||| || |||||||||||||    
T  8858 gacacgacacgtgtccgacaccgagacacgcctaatctgaggagtctccgtgcttcatagat 8919  T

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Target: scaffold0793 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0793
Description:

Target: scaffold0793; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 50 - 110
Target Start/End: Complemental strand, 4879 - 4819
Alignment:
Q  50 acacgacatgtgtccgacaccaggacacgtctaatcggaggagtgtctgtgcttcatagat 110  Q
    ||||||||  ||||||||||  ||||||| |||||| |||||||||| |||||||||||||    
T  4879 acacgacacatgtccgacacagggacacgcctaatccgaggagtgtccgtgcttcatagat 4819  T

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Target: scaffold0361 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0361
Description:

Target: scaffold0361; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 49 - 109
Target Start/End: Original strand, 14587 - 14647
Alignment:
Q  49 gacacgacatgtgtccgacaccaggacacgtctaatcggaggagtgtctgtgcttcataga 109  Q
    ||||||||| ||||||||||||  |||||| ||||||| ||||||||  ||||||||||||    
T  14587 gacacgacacgtgtccgacaccgagacacgcctaatcgaaggagtgtacgtgcttcataga 14647  T

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Target: scaffold0652 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0652
Description:

Target: scaffold0652; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 49 - 107
Target Start/End: Complemental strand, 461 - 403
Alignment:
Q  49 gacacgacatgtgtccgacaccaggacacgtctaatcggaggagtgtctgtgcttcata 107  Q
    ||||||||  |||||||||||| ||||||  |||||| |||||||||| ||||||||||    
T  461 gacacgacgcgtgtccgacaccgggacacacctaatccgaggagtgtccgtgcttcata 403  T

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Target: scaffold0020 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0020
Description:

Target: scaffold0020; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 59 - 108
Target Start/End: Complemental strand, 135312 - 135263
Alignment:
Q  59 gtgtccgacaccaggacacgtctaatcggaggagtgtctgtgcttcatag 108  Q
    |||||||||||||||||||| |||||| |||| ||||  |||||||||||    
T  135312 gtgtccgacaccaggacacgcctaatctgaggcgtgttcgtgcttcatag 135263  T

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Target: scaffold0050 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0050
Description:

Target: scaffold0050; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 49 - 105
Target Start/End: Original strand, 70338 - 70394
Alignment:
Q  49 gacacgacatgtgtccgacaccaggacacgtctaatcggaggagtgtctgtgcttca 105  Q
    ||||||||| |||||||||||||||||| | |||||| || ||||||  ||||||||    
T  70338 gacacgacacgtgtccgacaccaggacatgcctaatccgatgagtgttcgtgcttca 70394  T

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