View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9308_low_35 (Length: 334)
Name: NF9308_low_35
Description: NF9308
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9308_low_35 |
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Alignment Details
Target: chr1 (Bit Score: 263; Significance: 1e-146; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 263; E-Value: 1e-146
Query Start/End: Original strand, 19 - 327
Target Start/End: Original strand, 32809202 - 32809507
Alignment:
| Q |
19 |
ctcatgtcccatatgccctccattgtaggcatcaaatttggaggcaaattgtacaaaggcatagaagaaggatctggaagtcgaccctacaactaataga |
118 |
Q |
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| T |
32809202 |
ctcatgtcccatatgccctccattgtaggcatcaaatttggaggcaaattgtacaaaagcatagaag---ggtctggaagtccaccctacaactaataga |
32809298 |
T |
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| Q |
119 |
caattcccggcgaaggcgatccagcagacgttcctccacaatgcacagcgccacagaactaggtctttcattattatcattatcattgttatcaagtcga |
218 |
Q |
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||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
32809299 |
caattaccggcgaaggcgatccaccagacgttcctccacaatgcacagcgccacagaactaggtttttcattattatcattatcattgttatcaagtcga |
32809398 |
T |
|
| Q |
219 |
agtctctgataagttgcattagtaaaagtagctgcgataagcataacaagtcctactacaacaagagttccaacaacaaaacctttaactacgtgacctt |
318 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32809399 |
agtctctgataagttgcattagtaaaagtagctgcaataagcataaaaagtcctactacaacaagagttccaacaacaaaacctttaactacgtgacctt |
32809498 |
T |
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| Q |
319 |
gacctccat |
327 |
Q |
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||||||||| |
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| T |
32809499 |
gacctccat |
32809507 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 19 - 302
Target Start/End: Original strand, 32802632 - 32802920
Alignment:
| Q |
19 |
ctcatgtcccatatgccctccattgt-aggcatcaaatttggaggcaaattgtacaaaggcatagaagaaggatctggaagtcgaccctacaactaatag |
117 |
Q |
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|||||||||||| ||||||||||| | ||||| ||||||||| |||||||| ||||||||||| ||||||||||||||||| | ||||| ||||| || |
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| T |
32802632 |
ctcatgtcccatctgccctccattattaggcaacaaatttggtggcaaattatacaaaggcatggaagaaggatctggaagcccaccctgcaactgatga |
32802731 |
T |
|
| Q |
118 |
acaattcccggcgaaggcgatccagcag---acgttcctccacaatgcacagcgcca-cagaactaggtctttcattattatcattatcattgttatcaa |
213 |
Q |
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||||||| || | |||||||||| ||| ||| |||||||| |||||| |||| ||||| |||| | |||||||||||||||||||| || ||||| |
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| T |
32802732 |
ccaattcctggtggaggcgatccaccagtcgacgctcctccaccttgcacaccgcctgcagaattaggcccttcattattatcattatcatcgtcatcaa |
32802831 |
T |
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| Q |
214 |
gtcgaagtctctgataagttgcattagtaaaagtagctgcgataagcataacaagtcctactacaacaagagttccaacaacaaaacct |
302 |
Q |
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|| ||||||||| |||||| ||||||||||||||||| || |||||||||||| |||| ||| |||||||||||||||||||| ||||| |
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| T |
32802832 |
gtggaagtctctcataagtagcattagtaaaagtagcggcaataagcataacaggtccaactgcaacaagagttccaacaacacaacct |
32802920 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 54 - 98
Target Start/End: Complemental strand, 16579248 - 16579204
Alignment:
| Q |
54 |
atttggaggcaaattgtacaaaggcatagaagaaggatctggaag |
98 |
Q |
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|||||| |||||||| ||||||||||||||||| ||||||||||| |
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| T |
16579248 |
atttggtggcaaattatacaaaggcatagaagatggatctggaag |
16579204 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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