View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9308_low_4 (Length: 598)
Name: NF9308_low_4
Description: NF9308
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9308_low_4 |
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Alignment Details
Target: chr1 (Bit Score: 396; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 396; E-Value: 0
Query Start/End: Original strand, 153 - 580
Target Start/End: Original strand, 50084891 - 50085318
Alignment:
| Q |
153 |
tattgaaagaaaagggtcacttgccaactgcatatgtattttatgatgattggtaggtactattaattctattcaatagctgtaccattattttagtgca |
252 |
Q |
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| T |
50084891 |
tattgaaagaaaagggtcgcttgccaactgcatatgtattttatgatgattggtaggtactattaattctattcaatagctgtaccattattttagtgca |
50084990 |
T |
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| Q |
253 |
caatcagaagttaattattatgattgcttttatccaacattctgcatttatgcaccacatcaaaattttagtgctaaaaacattttaggtcatgcacaat |
352 |
Q |
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| T |
50084991 |
caatcagaaattaattattatgattgcttttatccaacattctgcatttatgtaccacatcaaaattttagtgctaaaaacattttaggtcatgcacaat |
50085090 |
T |
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| Q |
353 |
cagagtactaaaaataaatatttaatcgtgttaaacgagctaatcatatttacaaaatcaatttataagatgaaagttgtcgcctattaattcatttcag |
452 |
Q |
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| T |
50085091 |
cagagtactaaaaataaatatttagtcgtgttaaacgagctaatcatacttacaaaatcaatttataagatgagagttgtcgcctattaattcatttcag |
50085190 |
T |
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| Q |
453 |
gctatatatttagatatatatgggacttcagtttttctcaatacttccccctcacactcatcactatagggtttggagtgtagatttaaatgatggataa |
552 |
Q |
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| T |
50085191 |
gctatatatttagatatacatgggacttcagtttttctcaatactttcccctcacactcatcactatagggtttggagtgtagatttaaatgatggataa |
50085290 |
T |
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| Q |
553 |
cccgattgatagattatgatactatatt |
580 |
Q |
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| T |
50085291 |
cccgattgatagattatgatactatatt |
50085318 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 1 - 77
Target Start/End: Original strand, 50084738 - 50084814
Alignment:
| Q |
1 |
aaggaaccatcaatttaatgcaatggatatacttactaccaaatgaaagagcaattgaaaactaccatatcttcctc |
77 |
Q |
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| T |
50084738 |
aaggaaccatcaatttaatgcaatggatatacttactaccaaatgaaagagcaattgaaaactaccatatcttcctc |
50084814 |
T |
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