View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9308_low_40 (Length: 282)
Name: NF9308_low_40
Description: NF9308
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9308_low_40 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 261; Significance: 1e-145; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 18 - 282
Target Start/End: Complemental strand, 37510032 - 37509768
Alignment:
| Q |
18 |
tctctaaagcctctctcgccgccgatcaagcccgcactatcaaactcctcgatcaacgcgtccacactttagaacgagaactcgacgccgccatcaccgc |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37510032 |
tctctaaagcctctctcgccgccgatcaagcccgcactatcaaactcctcgatcaacgcgtccacactttagaacgagaactcgacgccgccatcaccgc |
37509933 |
T |
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| Q |
118 |
cgccgctcgcgctcgttccgagaaacgtcaagcggaagcgtcacagaaagccgctgaattacgcgctcttgaagtcaccaaagaactcgaaaacaccaca |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37509932 |
cgccgctcgcgctcgttccgagaaacgtcaagcggaagcgtcacagaaagccgctgaattacgcgctcttgaagtcaccaaagaactcgaaaacaccaca |
37509833 |
T |
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| Q |
218 |
agtgagtagtattaacctaattgtgaatcccaatttcgaattggatgattgtgaatttgaattat |
282 |
Q |
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|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
37509832 |
agtgagtagtattaacctaattgtgaatcctaatttcgaattggatgattgtgaatttgaattat |
37509768 |
T |
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Target: chr2 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 91 - 138
Target Start/End: Complemental strand, 21177467 - 21177420
Alignment:
| Q |
91 |
acgagaactcgacgccgccatcaccgccgccgctcgcgctcgttccga |
138 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
21177467 |
acgagaactcgacaccgccatcaccgccgccgctcgcgctcgttccga |
21177420 |
T |
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