View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9308_low_41 (Length: 281)
Name: NF9308_low_41
Description: NF9308
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9308_low_41 |
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Alignment Details
Target: chr4 (Bit Score: 254; Significance: 1e-141; HSPs: 9)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 1 - 262
Target Start/End: Original strand, 3749108 - 3749369
Alignment:
| Q |
1 |
caagtaactcagttgtgtgaggtttgacaatgaatttggaagtgttccattgaattgacaaaaagaaagatccaaagtagataactttctcaggtttcca |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
3749108 |
caagtaactcagttgtgtgaggtttgacaatgaatttggaagtgttccattgaattgacaaaaagaaagatccaaagtagataattttctcaggtttcca |
3749207 |
T |
|
| Q |
101 |
ataatgttaggtaatgctccatagaagtttgtgttacttactctaattatttgaagagattcactcattgagtagtgtggaaaaaagccatggagatttt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3749208 |
ataatgttaggtaatgctccatagaagtttgtgttacttactctaattatttgaagagattcactcattgagtagtgtggaaaaaagccatggagatttt |
3749307 |
T |
|
| Q |
201 |
tgttgttaaacaagtcaatagttgacagtgttccaatctgaaagattgcacgtggaaatgta |
262 |
Q |
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| T |
3749308 |
tgttgttaaacaagtcaatagttgacagtgttccaatctgaaagattgcatgtggaaatgta |
3749369 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 1 - 246
Target Start/End: Original strand, 5858220 - 5858465
Alignment:
| Q |
1 |
caagtaactcagttgtgtgaggtttgacaatgaatttggaagtgttccattgaattgacaaaaagaaagatccaaagtagataactttctcaggtttcca |
100 |
Q |
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||||||||| || ||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||| |||||||| |||| ||| ||| |
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| T |
5858220 |
caagtaactgaggtgtgtgaggtttgacaatgaatttggaagggttccattaaattgacaaaaagaaagatccaattcagataactgcctcaagttgcca |
5858319 |
T |
|
| Q |
101 |
ataatgttaggtaatgctccatagaagtttgtgttacttactctaattatttgaagagattcactcattgagtagtgtggaaaaaagccatggagatttt |
200 |
Q |
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| T |
5858320 |
atagagctaggtaatggtccagagaagtttgtgtcactcactctaattctatgaagagattcacttagtgagtagtttggaaatgaaccacggagatttt |
5858419 |
T |
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| Q |
201 |
tgttgttaaacaagtcaatagttgacagtgttccaatctgaaagat |
246 |
Q |
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|||| ||| |||||||| |||| |||||||||||||||||| |
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| T |
5858420 |
cgttggaaaataagtcaatcacagacaatgttccaatctgaaagat |
5858465 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 1 - 198
Target Start/End: Original strand, 5564956 - 5565153
Alignment:
| Q |
1 |
caagtaactcagttgtgtgaggtttgacaatgaatttggaagtgttccattgaattgacaaaaagaaagatccaaagtagataactttctcaggtttcca |
100 |
Q |
| |
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||||||||| || |||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||| ||||||| | |||| || ||| |
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| T |
5564956 |
caagtaactgaggtgtgtgaggtttgacaatgaatttggaagtgttccattaaattgacaactggaaagatccaatttagataagtgcctcaatttgcca |
5565055 |
T |
|
| Q |
101 |
ataatgttaggtaatgctccatagaagtttgtgttacttactctaattatttgaagagattcactcattgagtagtgtggaaaaaagccatggagatt |
198 |
Q |
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||| | |||||||||||||| |||||||||||| ||| ||| |||| | |||||||||||||| | |||||||| ||| || | ||||||||||| |
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| T |
5565056 |
atagagctaggtaatgctccagagaagtttgtgtaactcactataatgctatgaagagattcacttagtgagtagtctgggaatgaaccatggagatt |
5565153 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 11 - 186
Target Start/End: Original strand, 5605283 - 5605458
Alignment:
| Q |
11 |
agttgtgtgaggtttgacaatgaatttggaagtgttccattgaattgacaaaaagaaagatccaaagtagataactttctcaggtttccaataatgttag |
110 |
Q |
| |
|
|||||||||||||||||||||||||| | |||||||||||| ||||||||| ||||||| ||| |||||| | |||| ||| |||||| | ||| |
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| T |
5605283 |
agttgtgtgaggtttgacaatgaattggaaagtgttccattaaattgacaactggaaagatacaattcagataagtgcctcaagttgccaatagagctag |
5605382 |
T |
|
| Q |
111 |
gtaatgctccatagaagtttgtgttacttactctaattatttgaagagattcactcattgagtagtgtggaaaaaa |
186 |
Q |
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||||||||||| ||||| |||||||||| | |||| | |||||||||||||| | |||||||| ||||||||| |
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| T |
5605383 |
gtaatgctccagagaagcttgtgttactcgccataatgctgtgaagagattcactaagtgagtagtctggaaaaaa |
5605458 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 14 - 246
Target Start/End: Complemental strand, 5886385 - 5886153
Alignment:
| Q |
14 |
tgtgtgaggtttgacaatgaatttggaagtgttccattgaattgacaaaaagaaagatccaa-agtagataactttctcaggtttccaataatgttaggt |
112 |
Q |
| |
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|||||||| ||||||| |||||| ||||||||||||| | |||||| ||||||| |||||| || || ||| ||| ||| ||| || ||| |||| || |
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| T |
5886385 |
tgtgtgagatttgacagtgaattgggaagtgttccatatagttgacagaaagaaatatccaataggag-taagtttgtcatgttaccgatattgtttgga |
5886287 |
T |
|
| Q |
113 |
aatgctccatagaagtttgtgttacttactctaattatttgaagagattcactcattgagtagtgtggaaaaaagccatggagatttttgttgttaaaca |
212 |
Q |
| |
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||||||||| ||||| |||||||||| |||||||| | |||||| ||||||| | |||||| | || ||||| |||||||||| ||||| | | | |
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| T |
5886286 |
aatgctccagagaagcttgtgttactcactctaatgctatgaagatattcactaagtgagtaatcagggaaaaaaacatggagattggggttgtcagata |
5886187 |
T |
|
| Q |
213 |
agtcaatagttgacagtgttccaatctgaaagat |
246 |
Q |
| |
|
|||||||| |||||||||||| ||| || ||||| |
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| T |
5886186 |
agtcaataattgacagtgttctaatttggaagat |
5886153 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 75
Target Start/End: Complemental strand, 5853057 - 5852983
Alignment:
| Q |
1 |
caagtaactcagttgtgtgaggtttgacaatgaatttggaagtgttccattgaattgacaaaaagaaagatccaa |
75 |
Q |
| |
|
||||||||| |||| ||| |||||||| |||||||| |||||||||||||| |||||| || |||||||||||| |
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| T |
5853057 |
caagtaacttagttctgttaggtttgaaaatgaattgggaagtgttccattaaattgagaattagaaagatccaa |
5852983 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 11 - 75
Target Start/End: Complemental strand, 5895233 - 5895169
Alignment:
| Q |
11 |
agttgtgtgaggtttgacaatgaatttggaagtgttccattgaattgacaaaaagaaagatccaa |
75 |
Q |
| |
|
||||||||||||||||||| |||||| ||||||||||||| | |||||| ||||||||||||| |
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|
| T |
5895233 |
agttgtgtgaggtttgacagtgaattgggaagtgttccatatagttgacagtaagaaagatccaa |
5895169 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 75
Target Start/End: Original strand, 5553367 - 5553441
Alignment:
| Q |
1 |
caagtaactcagttgtgtgaggtttgacaatgaatttggaagtgttccattgaattgacaaaaagaaagatccaa |
75 |
Q |
| |
|
||||||||| |||| ||| |||||||| |||||||| |||||||||||||| ||||| || |||||||||||| |
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|
| T |
5553367 |
caagtaacttagttctgttaggtttgaaaatgaattgggaagtgttccattatattgagaattagaaagatccaa |
5553441 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 11 - 60
Target Start/End: Complemental strand, 252378 - 252329
Alignment:
| Q |
11 |
agttgtgtgaggtttgacaatgaatttggaagtgttccattgaattgaca |
60 |
Q |
| |
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|||| ||||||||||||||||||||| |||||||| ||||| |||||||| |
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| T |
252378 |
agttttgtgaggtttgacaatgaattgggaagtgtaccattaaattgaca |
252329 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 14 - 246
Target Start/End: Original strand, 1483224 - 1483456
Alignment:
| Q |
14 |
tgtgtgaggtttgacaatgaatttggaagtgttccattgaattgacaaaaagaaagatccaaagtagataactttctcaggtttccaataatgttaggta |
113 |
Q |
| |
|
||||||||||| |||| |||||| |||||||||||||| |||||||| ||| ||||||||| |||||| | |||| || |||||| ||| |||| |
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|
| T |
1483224 |
tgtgtgaggttggacattgaattgggaagtgttccattaaattgacagtaaggaagatccaattcagataagtacctcaatttgccaatagagtttggta |
1483323 |
T |
|
| Q |
114 |
atgctccatagaagtttgtgttacttactctaattatttgaagagattcactcattgagtagtgtggaaaaaagccatggagatttttgttgttaaacaa |
213 |
Q |
| |
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|| |||| | || |||||| ||| ||||||||| | ||||||||||||| | |||||||| |||||| | ||||| |||| ||||||| | | || |
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|
| T |
1483324 |
attctcctgataaacttgtgtaactaactctaattctacgaagagattcactaagtgagtagtttggaaatgaaccatgaagatcgttgttgtaatataa |
1483423 |
T |
|
| Q |
214 |
gtcaatagttgacagtgttccaatctgaaagat |
246 |
Q |
| |
|
||| ||| |||||||| | ||||||||||||| |
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|
| T |
1483424 |
gtcgataaatgacagtgctgcaatctgaaagat |
1483456 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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