View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9308_low_46 (Length: 262)
Name: NF9308_low_46
Description: NF9308
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9308_low_46 |
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Alignment Details
Target: chr4 (Bit Score: 204; Significance: 1e-111; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 1 - 246
Target Start/End: Complemental strand, 50556585 - 50556339
Alignment:
| Q |
1 |
tttccagggaagttttctaagagcgatggcatcggggtattcggtaatgatgtgaaggacactaatattcctgttgaagtgtggagatattacctgctca |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
50556585 |
tttccagggaagttttctaagagcgatggcatcggggtattcggtaatgatgtgaaggacactaatattcccgttgaagtgtggagatattacctgctca |
50556486 |
T |
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| Q |
101 |
taaataggcccgaggtaattcgatcttaaacatgtcttattaacacttatttatac-annnnnnnnnaagtgaattatttatacagatcttgaagataaa |
199 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
50556485 |
taaataggcccgaggtaattcgatcttaaacatgtcttattaacacttatttatactttttttttttaagtgaattatttatacagatcttgaagataaa |
50556386 |
T |
|
| Q |
200 |
aattgttaattttctctcctgtcattgagtacattgattgtgtttat |
246 |
Q |
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| T |
50556385 |
aattgttaattttctctcctgtcattgagtacattgattgtgtttat |
50556339 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 1 - 121
Target Start/End: Complemental strand, 29767901 - 29767781
Alignment:
| Q |
1 |
tttccagggaagttttctaagagcgatggcatcggggtattcggtaatgatgtgaaggacactaatattcctgttgaagtgtggagatattacctgctca |
100 |
Q |
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|||| |||||||||||| ||||| | |||||||||||||| |||||||||| || || ||||||||||| |||||||| |||||||||||| |||| | |
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| T |
29767901 |
tttctagggaagttttcgaagagtaaaggcatcggggtatttggtaatgatgcaaaagatactaatattccggttgaagtatggagatattacttgctaa |
29767802 |
T |
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| Q |
101 |
taaataggcccgaggtaattc |
121 |
Q |
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||||||||| |||||||||| |
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| T |
29767801 |
caaataggcctgaggtaattc |
29767781 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 184 - 246
Target Start/End: Complemental strand, 50567828 - 50567766
Alignment:
| Q |
184 |
agatcttgaagataaaaattgttaattttctctcctgtcattgagtacattgattgtgtttat |
246 |
Q |
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||||||||||||||||||||||||||||||||||||||||| ||||||||||| | ||||||| |
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| T |
50567828 |
agatcttgaagataaaaattgttaattttctctcctgtcatcgagtacattgaatatgtttat |
50567766 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 14 - 153
Target Start/End: Complemental strand, 50567970 - 50567831
Alignment:
| Q |
14 |
tttctaagagcgatggcatcggggtattcggtaatgatgtgaaggacactaatattcctgttgaagtgtggagatattacctgctcataaataggcccga |
113 |
Q |
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||||||||||| | ||||| |||||||||||||| ||| ||| || ||||||||||| |||||||| || | ||||||| |||||| ||||||| | |
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| T |
50567970 |
tttctaagagcaaaggcattggggtattcggtaaccatgcgaaagatactaatattccagttgaagtatgaaaatattacttgctcacaaataggaatta |
50567871 |
T |
|
| Q |
114 |
ggtaattcgatcttaaacatgtcttattaacacttattta |
153 |
Q |
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||| | || || | |||| | ||||||||||||||||||| |
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| T |
50567870 |
ggtgaatcaatttcaaacgtatcttattaacacttattta |
50567831 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 186 - 233
Target Start/End: Complemental strand, 50562366 - 50562319
Alignment:
| Q |
186 |
atcttgaagataaaaattgttaattttctctcctgtcattgagtacat |
233 |
Q |
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|||||||| ||||||| |||| ||||||||| |||||||||||||||| |
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| T |
50562366 |
atcttgaatataaaaaatgttcattttctcttctgtcattgagtacat |
50562319 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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