View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9308_low_5 (Length: 526)
Name: NF9308_low_5
Description: NF9308
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9308_low_5 |
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Alignment Details
Target: chr4 (Bit Score: 276; Significance: 1e-154; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 22 - 446
Target Start/End: Complemental strand, 39085692 - 39085244
Alignment:
| Q |
22 |
acgtgtatattcgaatgcagggaatctggatccttgcatgtcacgttctgttatgaatgatttatatttttctaaacaatacagtgtcttcatttttatt |
121 |
Q |
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| T |
39085692 |
acgtgtatattcaaatgcagggaatccggatccttgcatgtcacgttctgttatgaatgatttatatttttctaaacaatacagtgttttcatttttttt |
39085593 |
T |
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| Q |
122 |
gtttttggtcgaataagctttgaagtttgaacatggcccactttttcatgaattgtatcatctttgtctcaactactgaaggaatctccaagctatacc- |
220 |
Q |
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| T |
39085592 |
gtttttggtcgaataagctttgaagtttgaacatggcccactttttcatgaattgtatcatctttgtctcaactactgaaggaatctccaagctatacct |
39085493 |
T |
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| Q |
221 |
-----------------ttgaattcctcactttcattttcaccactttccaacattatatttctatctttattttgttcttatgagagaaaataagggat |
303 |
Q |
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| T |
39085492 |
ttcaaacttttataatgttgaattcctcactttcattttcaccactttccaacataatatttctatctttattttgttcttat--gagaaaataagggat |
39085395 |
T |
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| Q |
304 |
gattatgaatgttgagctaacaaaaatactcaacatatgc-ttttttaagggg---nnnnnnntactctac----atatgtgtcgaacaaaaattgtact |
395 |
Q |
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| T |
39085394 |
gattatgaatgttgagctaacaaaaatactcaacatatgctttttttaaggggaaaaaaaaaatactctacatatatatgtgtcgaacaaaaattgcact |
39085295 |
T |
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| Q |
396 |
actattattgttttgnnnnnnnacaatattttaattgaagcattataaaat |
446 |
Q |
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| T |
39085294 |
actattattgttttgtttttttacaatattttaattgaagcattataaaat |
39085244 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 436 - 512
Target Start/End: Complemental strand, 39083639 - 39083563
Alignment:
| Q |
436 |
cattataaaatattattttcgatacatgagttgcacgggtgtagtactctggtaaagataagataactggtcctttg |
512 |
Q |
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| T |
39083639 |
cattataaaatattatttttgatacatgagttgcacgggtgtagtactctggtaaagataagataattggtcctttg |
39083563 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 133 - 218
Target Start/End: Complemental strand, 39081727 - 39081642
Alignment:
| Q |
133 |
aataagctttgaagtttgaacatggcccactttttcatgaattgtatcatctttgtctcaactactgaaggaatctccaagctata |
218 |
Q |
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| T |
39081727 |
aataagctttgaagtttgaacatggccagcttttctatgaatggtatcatctttgtctcaactactgaaggaatctccaagctata |
39081642 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 59 - 115
Target Start/End: Complemental strand, 39081847 - 39081791
Alignment:
| Q |
59 |
atgtcacgttctgttatgaatgatttatatttttctaaacaatacagtgtcttcatt |
115 |
Q |
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| T |
39081847 |
atgtcacgttctgttatgcatgatttatatttttctaaataatacagtgtcttcatt |
39081791 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 382 - 483
Target Start/End: Complemental strand, 39089379 - 39089279
Alignment:
| Q |
382 |
acaaaaattgtactactattattgttttgnnnnnnnacaatattttaattgaagcattataaaatattattttcgatacatgagttgcacgggtgtagta |
481 |
Q |
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| T |
39089379 |
acaaaaattgtactactattattgtttt-tctttttacaatttttaaattgaagcattacaaaatattatttctgatacatgagaagcacgggtgtagta |
39089281 |
T |
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| Q |
482 |
ct |
483 |
Q |
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|| |
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| T |
39089280 |
ct |
39089279 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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