View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9308_low_51 (Length: 252)
Name: NF9308_low_51
Description: NF9308
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9308_low_51 |
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Alignment Details
Target: chr4 (Bit Score: 242; Significance: 1e-134; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 1 - 242
Target Start/End: Complemental strand, 25497111 - 25496870
Alignment:
| Q |
1 |
aacaaagccaaggaactcttttggaaagaaatcttcagaagccggacttcctggaaactttgtcaaggtttcaataaatagtaaaaaagtgacagaagca |
100 |
Q |
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| T |
25497111 |
aacaaagccaaggaactcttttggaaagaaatcttcagaagccggacttcctggaaactttgtcaaggtttcaataaatagtaaaaaagtgacagaagca |
25497012 |
T |
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| Q |
101 |
agtgttcaatggacttcactcccttcatctattgcgaagcttgggagggtatatatcgtcttataactccttattttttctgttttaccttattttcttt |
200 |
Q |
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| T |
25497011 |
agtgttcaatggacttcactcccttcatctattgcgaagcttgggagggtatatatcgtcttataactccttattttttctgttttaccttattttcttt |
25496912 |
T |
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| Q |
201 |
tagttgtatcattagtcagttggttgcttccagtgctctctg |
242 |
Q |
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| T |
25496911 |
tagttgtatcattagtcagttggttgcttccagtgctctctg |
25496870 |
T |
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Back To:
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Target: chr2 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 44 - 144
Target Start/End: Complemental strand, 42467243 - 42467143
Alignment:
| Q |
44 |
ggacttcctggaaactttgtcaaggtttcaataaatagtaaaaaagtgacagaagcaagtgttcaatggacttcactcccttcatctattgcgaagcttg |
143 |
Q |
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| T |
42467243 |
ggactacctggaaacatggtcaaagtttctttaggtagtagaaaagtgacagatgcaagtgttcagtggacttcactcccgtcgtctatttcaaagcttg |
42467144 |
T |
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| Q |
144 |
g |
144 |
Q |
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| T |
42467143 |
g |
42467143 |
T |
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