View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9308_low_53 (Length: 251)
Name: NF9308_low_53
Description: NF9308
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9308_low_53 |
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Alignment Details
Target: chr6 (Bit Score: 153; Significance: 3e-81; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 1 - 169
Target Start/End: Original strand, 8877658 - 8877826
Alignment:
| Q |
1 |
cattcaaagaaggcaggatcgcgcaatatgtaatcatgaatggtatgcttcttgtaacttagtaacatgttctaccctcactaagcttaggtctaaccat |
100 |
Q |
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| T |
8877658 |
cattcaaagaaggctggatcgcacaatatgtaatcatgaatggtatgctgcttgtaacttagtaacatgttctaccctcactaagcttaggtctaaccat |
8877757 |
T |
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| Q |
101 |
taccctttattgttagaattcaaaaatgatgactgcttgtttatatctcaatttaaatttctgaaaatc |
169 |
Q |
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| T |
8877758 |
taccctttattgttagaattcaaaaatgatgaatgcttgtttatatctcaatttaaatttctgaaaatc |
8877826 |
T |
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Target: chr6; HSP #2
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 166 - 241
Target Start/End: Original strand, 8883385 - 8883460
Alignment:
| Q |
166 |
aatctggatttcacatcctaattgtattaacatagtgaagaattgttggaacactcaattcattggctgtcctatg |
241 |
Q |
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| T |
8883385 |
aatctggatttcacatcctaattgtattaacatagtgaagaattgttggaacactcaattcattggctgtcctatg |
8883460 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 24 - 157
Target Start/End: Original strand, 22136223 - 22136356
Alignment:
| Q |
24 |
caatatgtaatcatgaatggtatgcttcttgtaacttagtaacatgttctaccctcactaagcttaggtctaaccattaccctttattgttagaattcaa |
123 |
Q |
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|||| ||||| || |||||||||| | |||||||||| ||||| | ||| || ||||| |||||||| ||| |||||| |||| | | ||||||| || |
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| T |
22136223 |
caatttgtaaccaggaatggtatgttgcttgtaactttgtaacctattcaactctcacaaagcttagatcttaccatttccctatccttctagaatttaa |
22136322 |
T |
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| Q |
124 |
aaatgatgactgcttgtttatatctcaatttaaa |
157 |
Q |
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| T |
22136323 |
aaatggtgactgtctctttgtctctcaatttaaa |
22136356 |
T |
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