View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9308_low_54 (Length: 251)
Name: NF9308_low_54
Description: NF9308
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9308_low_54 |
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Alignment Details
Target: chr4 (Bit Score: 206; Significance: 1e-113; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 37509551 - 37509330
Alignment:
| Q |
1 |
ttcttggtttcgtttgtttatgtgtaaattaagttgttatagttctagtaagtaaagattgattgttatcttcaacactgtaataaagttgaatttttct |
100 |
Q |
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| T |
37509551 |
ttcttggtttcgttcgtttctgtgtaaattaagttgttatagttctagtaagtaaagattgattgttatcttcaacactgtaataaagttgaatttttct |
37509452 |
T |
|
| Q |
101 |
ataatgaatattttttctgtattagttagttctctggagcaaggattaaatttgtgtgtgtgaaatgaaggtgataaagaaaataagtgcatgatagatt |
200 |
Q |
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||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37509451 |
ataatgagtattttttctgtattagttagttctctggtgcaaggattaaatttgtgtgtgtgaaatgaaggtgataaagaaaataagtgcatgatagatt |
37509352 |
T |
|
| Q |
201 |
tgaatttgagggggtgttgaac |
222 |
Q |
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|||||||||||||||||||||| |
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| T |
37509351 |
tgaatttgagggggtgttgaac |
37509330 |
T |
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