View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9308_low_56 (Length: 248)
Name: NF9308_low_56
Description: NF9308
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9308_low_56 |
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Alignment Details
Target: chr3 (Bit Score: 213; Significance: 1e-117; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 16 - 240
Target Start/End: Complemental strand, 24413250 - 24413026
Alignment:
| Q |
16 |
ttttctacataatgaagagtttataatgtgttatagttaccaagattaactctaacagcatccatgtaagagtagttccttttcccagttaccgaatcag |
115 |
Q |
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| T |
24413250 |
ttttctgcataatgaagagtttataatgtgttatagttaccaagattaactctaacagcatccatgtaagagtagttccttttcccagttaccgaatcag |
24413151 |
T |
|
| Q |
116 |
gatttctgtaacaatcagataaaaggaatgaagaaatgtaagtaactattgcacagcaaagcaaggtaactggtcctccaatccatcctaattgagcagt |
215 |
Q |
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||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24413150 |
gatttctgtaacaatcagataaaaggaatgaagaaatataagtaactattgcacaacaaagcaaggtaactggtcctccaatccatcctaattgagcagt |
24413051 |
T |
|
| Q |
216 |
actccatgccaatgacagaacacca |
240 |
Q |
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||||||||||||||||||||||||| |
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| T |
24413050 |
actccatgccaatgacagaacacca |
24413026 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 16 - 240
Target Start/End: Original strand, 24420791 - 24421015
Alignment:
| Q |
16 |
ttttctacataatgaagagtttataatgtgttatagttaccaagattaactctaacagcatccatgtaagagtagttccttttcccagttaccgaatcag |
115 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24420791 |
ttttctacataatgaagagtttatagtgtgttatagttaccaagattaactctaacagcatccatgtaagagtagttccttttcccagttaccgaatcag |
24420890 |
T |
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| Q |
116 |
gatttctgtaacaatcagataaaaggaatgaagaaatgtaagtaactattgcacagcaaagcaaggtaactggtcctccaatccatcctaattgagcagt |
215 |
Q |
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| T |
24420891 |
gatttctgtaacaatcggataaaaggaatgaagaaatataagtaactattgcacaacaaagcaaggtaactggtcctccaatccatcctaattgagcagt |
24420990 |
T |
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| Q |
216 |
actccatgccaatgacagaacacca |
240 |
Q |
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||||||||||||||||||||||||| |
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| T |
24420991 |
actccatgccaatgacagaacacca |
24421015 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 97; E-Value: 9e-48
Query Start/End: Original strand, 52 - 240
Target Start/End: Complemental strand, 24377922 - 24377734
Alignment:
| Q |
52 |
ttaccaagattaactctaacagcatccatgtaagagtagttccttttcccagttaccgaatcaggatttctgtaacaatcagataaaaggaatgaagaaa |
151 |
Q |
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||||||||||| ||||||||||||||||| |||||||||| ||||||||| |||| || ||||||| |||||||||||||| |||||||||||||||| |
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| T |
24377922 |
ttaccaagattgactctaacagcatccataaaagagtagtttcttttcccatttacagagtcaggatgtctgtaacaatcagccaaaaggaatgaagaaa |
24377823 |
T |
|
| Q |
152 |
tgtaagtaactattgcacagcaaagcaaggtaactggtcctccaatccatcctaattgagcagtactccatgccaatgacagaacacca |
240 |
Q |
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| T |
24377822 |
cataggtagctattgcacaagaaagtaatgcaagtggccctccaatccatcctagttgagcagtactccatgccaatgacaaaacacca |
24377734 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 97; E-Value: 9e-48
Query Start/End: Original strand, 52 - 240
Target Start/End: Complemental strand, 24400765 - 24400577
Alignment:
| Q |
52 |
ttaccaagattaactctaacagcatccatgtaagagtagttccttttcccagttaccgaatcaggatttctgtaacaatcagataaaaggaatgaagaaa |
151 |
Q |
| |
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||||||||||| ||||||||||||||||| |||||| ||| |||||||||||||| |||||||||| |||||||||||||| |||||| ||||||||| |
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| T |
24400765 |
ttaccaagattgactctaacagcatccataaaagagtggtttcttttcccagttacagaatcaggatgtctgtaacaatcagccaaaagggatgaagaaa |
24400666 |
T |
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| Q |
152 |
tgtaagtaactattgcacagcaaagcaaggtaactggtcctccaatccatcctaattgagcagtactccatgccaatgacagaacacca |
240 |
Q |
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| || ||| |||||||||| ||| ||||| || ||| |||||||||||||||||||||| | ||||||||||||| |||| ||||||| |
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| T |
24400665 |
tataggtagctattgcacaagaaaacaaggcaagtggccctccaatccatcctaattgagaaatactccatgccaaagacaaaacacca |
24400577 |
T |
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