View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9308_low_6 (Length: 503)
Name: NF9308_low_6
Description: NF9308
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9308_low_6 |
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Alignment Details
Target: chr2 (Bit Score: 336; Significance: 0; HSPs: 6)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 336; E-Value: 0
Query Start/End: Original strand, 58 - 486
Target Start/End: Complemental strand, 8590880 - 8590450
Alignment:
| Q |
58 |
acatttattctcttgttattaagtcaaatatttctgtactattttataatatctttacaagtttgacaaccttataaatgttgttgttagttctccaaag |
157 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
8590880 |
acatttattctcttgttattaagtcaaatatttctgtactattttataatatctttacaagtttgacaaccttataaatgttgttgttagctctccaaag |
8590781 |
T |
|
| Q |
158 |
aatatcatgattttgattcgtagtttttgtaagtatttgcttaggtaggatatatgatttttactcttcattaaactaaattttatacaatcagtagttg |
257 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||| || | |
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| T |
8590780 |
aatatcatgattttgattcgtagtttttgtaagtatttgcttaggtaggatatacgatttttattcttcattaaactaaattttatacaatcagttgtgg |
8590681 |
T |
|
| Q |
258 |
tagaaaatagttattgttgatcggttttgtatatcatgtgttatgtcttcgttaaccttaataaatttttatggttccatccctgtcaccaacatctcaa |
357 |
Q |
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||||||||||||||||||||||| |||||| ||||| |||||||||||||| || ||||||||||||||||||||||||| ||||||| ||||||||||| |
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| T |
8590680 |
tagaaaatagttattgttgatcgattttgtttatcacgtgttatgtcttcgctacccttaataaatttttatggttccattcctgtcatcaacatctcaa |
8590581 |
T |
|
| Q |
358 |
tgagaacgcagaagagt-nnnnnnnnncatcttctatcatagtgctacaagcagccaacttaaattctccaatgcactatcacacaccacc-tcatatca |
455 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| | |
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| T |
8590580 |
tgagaacgcagaagagtacaaaaaaaacatcttctatcatagtgctacaagcagccaacttaaattctccaatgcactatcacacaccaccatcatataa |
8590481 |
T |
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| Q |
456 |
ccacttaatggtacttggatgggccatgact |
486 |
Q |
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| T |
8590480 |
ccacttaatggtacttggatgggccatgact |
8590450 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 86; E-Value: 7e-41
Query Start/End: Original strand, 125 - 278
Target Start/End: Complemental strand, 45361685 - 45361532
Alignment:
| Q |
125 |
aaccttataaatgttgttgttagttctccaaagaatatcatgattttgattcgtagtttttgtaagtatttgcttaggtaggatatatgatttttactct |
224 |
Q |
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|||| ||||||| ||||||||||||||| ||||||||||||||||||||| |||||||||| ||||||||| || ||||||||||| |||||||| | | |
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| T |
45361685 |
aaccgtataaatcttgttgttagttctctaaagaatatcatgattttgatcggtagtttttgcaagtatttggtttggtaggatataagatttttatttt |
45361586 |
T |
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| Q |
225 |
tcattaaactaaattttatacaatcagtagttgtagaaaatagttattgttgat |
278 |
Q |
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||||| |||||||||||||| ||| |||| |||||| ||||| ||||||||||| |
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| T |
45361585 |
tcattgaactaaattttatataattagtaattgtaggaaataattattgttgat |
45361532 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 1 - 59
Target Start/End: Complemental strand, 39154275 - 39154217
Alignment:
| Q |
1 |
ccggactaaaatgtacaagtctgtgcgccggtcacgattttgtgcttgggtcgtgacac |
59 |
Q |
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| T |
39154275 |
ccggactaaaatgtacaagtctgtgcgccggtcacgattttgtgcttgggtcgtgacac |
39154217 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 148 - 274
Target Start/End: Original strand, 39212498 - 39212624
Alignment:
| Q |
148 |
ttctccaaagaatatcatgattttgattcgtagtttttgtaagtatttgcttaggtaggatatatgatttttactcttcattaaactaaattttatacaa |
247 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||| |||| || | | ||||| || ||||| |||||||| |||||||||||||| || |
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| T |
39212498 |
ttctccaaagaatatcatgattttgattggtagtttttgtaagtgtttgttttgccggtatataagacttttattcttcatttaactaaattttatataa |
39212597 |
T |
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| Q |
248 |
tcagtagttgtagaaaatagttattgt |
274 |
Q |
| |
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|||||| | | ||||||| |||||||| |
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| T |
39212598 |
tcagtaatcgcagaaaattgttattgt |
39212624 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 31714519 - 31714556
Alignment:
| Q |
1 |
ccggactaaaatgtacaagtctgtgcgccggtcacgat |
38 |
Q |
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| T |
31714519 |
ccggactaaaatgtacaagtctgtgcgccggtcacgat |
31714556 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 384 - 486
Target Start/End: Complemental strand, 31802438 - 31802335
Alignment:
| Q |
384 |
catcttctatcatagtgctacaagcagccaacttaaattctccaatgcactatcacacaccacc-tcatatcaccacttaatggtacttggatgggccat |
482 |
Q |
| |
|
||||||||| || ||||| |||| ||||||| |||| || ||||||||||||||||||||||| |||||| | | ||||||| ||||| |||| |||| |
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| T |
31802438 |
catcttctaacaaggtgcttcaagaagccaacataaaatcaccaatgcactatcacacaccaccatcatattagctcttaatgatacttaaatggaccat |
31802339 |
T |
|
| Q |
483 |
gact |
486 |
Q |
| |
|
|||| |
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|
| T |
31802338 |
gact |
31802335 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 73; Significance: 4e-33; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 129 - 293
Target Start/End: Original strand, 6864099 - 6864263
Alignment:
| Q |
129 |
ttataaatgttgttgttagttctccaaagaatatcatgattttgattcgtagtttttgtaagtatttgcttaggtaggatatatgatttttactcttcat |
228 |
Q |
| |
|
||||||| ||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||| | || | ||||| |||||||| |||||| |
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| T |
6864099 |
ttataaacattgttgttagttctccaaaaaatatcatgattttgattggtagtttttgtaagtatttgccttggcaacatataagatttttattcttcac |
6864198 |
T |
|
| Q |
229 |
taaactaaattttatacaatcagtagttgtagaaaatagttattgttgatcggttttgtatatca |
293 |
Q |
| |
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| |||||||||||||| ||| ||| ||||||||| ||||| ||||||||| | |||| ||||| |
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| T |
6864199 |
ttaactaaattttatataattggtaactgtagaaaaaagttactgttgatcgatgttgtttatca |
6864263 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 58; Significance: 3e-24; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 1 - 58
Target Start/End: Original strand, 27684673 - 27684730
Alignment:
| Q |
1 |
ccggactaaaatgtacaagtctgtgcgccggtcacgattttgtgcttgggtcgtgaca |
58 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27684673 |
ccggactaaaatgtacaagtctgtgcgccggtcacgattttgtgcttgggtcgtgaca |
27684730 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 1 - 58
Target Start/End: Original strand, 27691992 - 27692049
Alignment:
| Q |
1 |
ccggactaaaatgtacaagtctgtgcgccggtcacgattttgtgcttgggtcgtgaca |
58 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
27691992 |
ccggactaaaatgtacaagtctgtgcgccggtcacgattttgtgcttgggtcgtgaca |
27692049 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 1 - 59
Target Start/End: Original strand, 17358166 - 17358224
Alignment:
| Q |
1 |
ccggactaaaatgtacaagtctgtgcgccggtcacgattttgtgcttgggtcgtgacac |
59 |
Q |
| |
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||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||| |
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| T |
17358166 |
ccggactaaaatgtataagtttgtgcgccggtcacgattttgtgcttgggtcgtgacac |
17358224 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 8 - 59
Target Start/End: Complemental strand, 13141635 - 13141583
Alignment:
| Q |
8 |
aaaatgtacaagtctgtgcgccggtcacgatttt-gtgcttgggtcgtgacac |
59 |
Q |
| |
|
|||||||| || |||||||||||||||||||||| || ||||||||||||||| |
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|
| T |
13141635 |
aaaatgtataaatctgtgcgccggtcacgattttcgttcttgggtcgtgacac |
13141583 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 4 - 58
Target Start/End: Complemental strand, 54351412 - 54351357
Alignment:
| Q |
4 |
gactaaaatgtacaagtctgtgcgccggtcacga-ttttgtgcttgggtcgtgaca |
58 |
Q |
| |
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|||||||||||| ||||||||| ||||||||||| |||||| |||||||||||||| |
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|
| T |
54351412 |
gactaaaatgtataagtctgtgtgccggtcacgatttttgttcttgggtcgtgaca |
54351357 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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