View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9308_low_60 (Length: 247)
Name: NF9308_low_60
Description: NF9308
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9308_low_60 |
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Alignment Details
Target: chr8 (Bit Score: 207; Significance: 1e-113; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 18 - 236
Target Start/End: Original strand, 8696198 - 8696416
Alignment:
| Q |
18 |
cgtctggcagcaaatagtatctctcagatttctttgtcatatagaaccatttttcgtcaatgtgaataatattatacatacttttaaacattggatcatg |
117 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8696198 |
cgtctggcagcaaatagtatctctcagatttcttcgtcatatagaaccatttttcgtcaatgtgaataatattatacatacttttaaacattggatcatg |
8696297 |
T |
|
| Q |
118 |
tggtataccttcaagcatcgacaaacaaaactccaaccgcaatcttttaccttcctcggttagttgtggctttatggcactcgaatgacgttgtattgca |
217 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
8696298 |
tggtataccttcaagcatcgacaaacaaaactccaaccgcaatcttttaccttcctctgttagttgtggctttatggcactcgaatgacgttgtattgca |
8696397 |
T |
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| Q |
218 |
cctgataatataatcctat |
236 |
Q |
| |
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||||||||||||| ||||| |
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| T |
8696398 |
cctgataatataagcctat |
8696416 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 203; Significance: 1e-111; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 18 - 236
Target Start/End: Original strand, 34223987 - 34224205
Alignment:
| Q |
18 |
cgtctggcagcaaatagtatctctcagatttctttgtcatatagaaccatttttcgtcaatgtgaataatattatacatacttttaaacattggatcatg |
117 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34223987 |
cgtctggcagcaaatagtatctctcagatttcttcgtcatatagaaccatttttcgtcaatgtgaataatattatacatacttttaaacattggatcatg |
34224086 |
T |
|
| Q |
118 |
tggtataccttcaagcatcgacaaacaaaactccaaccgcaatcttttaccttcctcggttagttgtggctttatggcactcgaatgacgttgtattgca |
217 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
34224087 |
tggtataccttcaagcatcgacaaacaaaactccaaccgcaatcttttaccttcctctgttagttgtggctttatggcactcgaatgacgttgtattgca |
34224186 |
T |
|
| Q |
218 |
cctgataatataatcctat |
236 |
Q |
| |
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||| ||||||||| ||||| |
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| T |
34224187 |
ccttataatataagcctat |
34224205 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 56 - 123
Target Start/End: Original strand, 40287412 - 40287479
Alignment:
| Q |
56 |
atatagaaccatttttcgtcaatgtgaataatattatacatacttttaaacattggatcatgtggtat |
123 |
Q |
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||||||||||||||||| |||||||||| || |||||||||| ||||||| ||||||||||||||| |
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| T |
40287412 |
atatagaaccatttttcatcaatgtgaacaacattatacataggcttaaacactggatcatgtggtat |
40287479 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 59 - 123
Target Start/End: Original strand, 16444047 - 16444111
Alignment:
| Q |
59 |
tagaaccatttttcgtcaatgtgaataatattatacatacttttaaacattggatcatgtggtat |
123 |
Q |
| |
|
|||||||||||||| || ||||||| || |||||||||| |||||||| ||||||||||||||| |
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|
| T |
16444047 |
tagaaccatttttcatctatgtgaacaacattatacataggtttaaacactggatcatgtggtat |
16444111 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 59 - 123
Target Start/End: Complemental strand, 7304138 - 7304074
Alignment:
| Q |
59 |
tagaaccatttttcgtcaatgtgaataatattatacatacttttaaacattggatcatgtggtat |
123 |
Q |
| |
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||||| |||||||| || ||||||| || |||||||||| |||||||| ||||||||||||||| |
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| T |
7304138 |
tagaatcatttttcatctatgtgaacaacattatacataggtttaaacactggatcatgtggtat |
7304074 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 59 - 123
Target Start/End: Complemental strand, 6124316 - 6124252
Alignment:
| Q |
59 |
tagaaccatttttcgtcaatgtgaataatattatacatacttttaaacattggatcatgtggtat |
123 |
Q |
| |
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|||||||||||||| || ||||||| || |||||||||| |||||||| ||||||||||||||| |
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| T |
6124316 |
tagaaccatttttcatctatgtgaacaacattatacataggtttaaacactggatcatgtggtat |
6124252 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 36; Significance: 0.00000000002; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 56 - 123
Target Start/End: Complemental strand, 24742109 - 24742042
Alignment:
| Q |
56 |
atatagaaccatttttcgtcaatgtgaataatattatacatacttttaaacattggatcatgtggtat |
123 |
Q |
| |
|
||||||||||||||||| |||||||||| || |||||||||| ||||||| | ||||||||||||| |
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| T |
24742109 |
atatagaaccatttttcatcaatgtgaacaacattatacataggcttaaacacttgatcatgtggtat |
24742042 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 59 - 123
Target Start/End: Complemental strand, 4202840 - 4202776
Alignment:
| Q |
59 |
tagaaccatttttcgtcaatgtgaataatattatacatacttttaaacattggatcatgtggtat |
123 |
Q |
| |
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|||||||||||||| ||||||| || || |||||||||| ||||||| ||||||||||||||| |
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| T |
4202840 |
tagaaccatttttcatcaatgtaaacaacattatacatatgcttaaacactggatcatgtggtat |
4202776 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 59 - 123
Target Start/End: Original strand, 10368832 - 10368896
Alignment:
| Q |
59 |
tagaaccatttttcgtcaatgtgaataatattatacatacttttaaacattggatcatgtggtat |
123 |
Q |
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|||||||||||||| || | ||||| || |||||||||| ||||||| ||||||||||||||| |
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| T |
10368832 |
tagaaccatttttcatctacgtgaacaacattatacataggcttaaacactggatcatgtggtat |
10368896 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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