View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9308_low_7 (Length: 455)
Name: NF9308_low_7
Description: NF9308
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9308_low_7 |
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Alignment Details
Target: chr3 (Bit Score: 422; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 422; E-Value: 0
Query Start/End: Original strand, 1 - 442
Target Start/End: Original strand, 43917107 - 43917548
Alignment:
| Q |
1 |
tgctgcaaggagatcaaaagatataacaatcacaggcaaaaagcttacagctgagaaagaaaactagtattttataatgaattaaaacctcttcagttaa |
100 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43917107 |
tgctgcaaggagaacaaaagatataacaatcacaggcaaaaagcttacagctgagaaagaaaactagtattttataatgaattaaaacctcttcagttaa |
43917206 |
T |
|
| Q |
101 |
actgagatggaatcgctttcttaggttctgtattgtccgtggaccacatttaaagcaggggaaaccagagtcctggtaacaacataaggaaacaaaaact |
200 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
43917207 |
actgagatggaatcgctttcttaggttctgtatcgtccgtggaccacatttaaagcaggggaaaccagagtcctggtaacaacatagggaaacaaaaact |
43917306 |
T |
|
| Q |
201 |
cagagcatgtatttcatagtatttcctgattttctcctcccaatacccatacacatatagtagcaatgagaggcccaagaaagtacacacagttgagtgc |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43917307 |
cagagcatgtatttcatagtatttcctgattttctcctcccaatacccatacacatatagtagcaatgagaggcccaagaaagtacacacagttgagtgc |
43917406 |
T |
|
| Q |
301 |
catgactatcaacagtcattaaagatagatcaaacccaggatcatcttttaacacggagcattcagaaaggttaaggccaagcatcgtctacaaggcgag |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
43917407 |
catgactatcaacagtcattaaagatagatcaaacccaggatcatcttttaacacggagcattcagaaaggttaaggccaagcatcgtctacaaggtgag |
43917506 |
T |
|
| Q |
401 |
gaaaagaggaaacttccaatcaaacacagtgtaaccttgttg |
442 |
Q |
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||||||| |||||||||||||||||||||||||||||||||| |
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| T |
43917507 |
gaaaagacgaaacttccaatcaaacacagtgtaaccttgttg |
43917548 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 50; Significance: 2e-19; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 86 - 187
Target Start/End: Complemental strand, 39129493 - 39129392
Alignment:
| Q |
86 |
aacctcttcagttaaactgagatggaatcgctttcttaggttctgtattgtccgtggaccacatttaaagcaggggaaaccagagtcctggtaacaacat |
185 |
Q |
| |
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||||||||| ||||||||||||||||||||||||| || ||||||||| || ||| ||||| |||||||||||| ||||| || ||||| || |||||| |
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| T |
39129493 |
aacctcttctgttaaactgagatggaatcgctttcgtaagttctgtatcgtacgtataccacctttaaagcagggaaaacccgaatcctgataccaacat |
39129394 |
T |
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| Q |
186 |
aa |
187 |
Q |
| |
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|| |
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| T |
39129393 |
aa |
39129392 |
T |
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Back To:
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