View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9308_low_73 (Length: 239)

Name: NF9308_low_73
Description: NF9308
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9308_low_73
NF9308_low_73
[»] chr4 (1 HSPs)
chr4 (1-223)||(25497277-25497499)
[»] chr2 (2 HSPs)
chr2 (181-219)||(13869244-13869282)
chr2 (181-217)||(14316970-14317006)
[»] chr8 (2 HSPs)
chr8 (183-219)||(41871876-41871912)
chr8 (177-217)||(31884473-31884513)
[»] chr1 (2 HSPs)
chr1 (179-223)||(24263284-24263328)
chr1 (181-217)||(29794073-29794109)
[»] chr7 (1 HSPs)
chr7 (178-223)||(39505837-39505882)
[»] chr6 (1 HSPs)
chr6 (172-220)||(33828520-33828568)
[»] chr3 (1 HSPs)
chr3 (183-219)||(33965641-33965677)


Alignment Details
Target: chr4 (Bit Score: 219; Significance: 1e-120; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 25497277 - 25497499
Alignment:
Q  1 ataaagtgaatcttgttaaaacataattgtttcttttactcaaaacacaaaagtaatgaaatacagacatgagacacaaaagttcagcatattattcaat 100  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25497277 ataaagtgaatcttgttaaaacataattgtttcctttactcaaaacacaaaagtaatgaaatacagacatgagacacaaaagttcagcatattattcaat 25497376  T
Q  101 caataaaacatatttaacaaagaaaataaaggacatgaaatcaaatccaacaaggcttgttcaaaaagacaaaggccctatttggataaacagatcaatt 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25497377 caataaaacatatttaacaaagaaaataaaggacatgaaatcaaatccaacaaggcttgttcaaaaagacaaaggccctatttggataaacagatcaatt 25497476  T
Q  201 aagcgcttatagcataaacgttt 223  Q
    |||||||||||||||||||||||    
T  25497477 aagcgcttatagcataaacgttt 25497499  T

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Target: chr2 (Bit Score: 35; Significance: 0.00000000008; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 181 - 219
Target Start/End: Complemental strand, 13869282 - 13869244
Alignment:
Q  181 tttggataaacagatcaattaagcgcttatagcataaac 219  Q
    ||||||||||||| |||||||||||||||||||||||||    
T  13869282 tttggataaacagctcaattaagcgcttatagcataaac 13869244  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 181 - 217
Target Start/End: Complemental strand, 14317006 - 14316970
Alignment:
Q  181 tttggataaacagatcaattaagcgcttatagcataa 217  Q
    |||||||||||| || |||||||||||||||||||||    
T  14317006 tttggataaacaaattaattaagcgcttatagcataa 14316970  T

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Target: chr8 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 183 - 219
Target Start/End: Original strand, 41871876 - 41871912
Alignment:
Q  183 tggataaacagatcaattaagcgcttatagcataaac 219  Q
    ||||||||||||| |||||||||||||||||||||||    
T  41871876 tggataaacagattaattaagcgcttatagcataaac 41871912  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 177 - 217
Target Start/End: Original strand, 31884473 - 31884513
Alignment:
Q  177 cctatttggataaacagatcaattaagcgcttatagcataa 217  Q
    ||||||||||||||||  |||||||||| ||||||||||||    
T  31884473 cctatttggataaacaactcaattaagcacttatagcataa 31884513  T

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Target: chr1 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 179 - 223
Target Start/End: Complemental strand, 24263328 - 24263284
Alignment:
Q  179 tatttggataaacagatcaattaagcgcttatagcataaacgttt 223  Q
    ||||||||||||||| | ||||||| |||||||||||||||||||    
T  24263328 tatttggataaacagtttaattaagtgcttatagcataaacgttt 24263284  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 181 - 217
Target Start/End: Complemental strand, 29794109 - 29794073
Alignment:
Q  181 tttggataaacagatcaattaagcgcttatagcataa 217  Q
    ||||||||||||| | |||||||||||||||||||||    
T  29794109 tttggataaacagcttaattaagcgcttatagcataa 29794073  T

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Target: chr7 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 178 - 223
Target Start/End: Original strand, 39505837 - 39505882
Alignment:
Q  178 ctatttggataaacagatcaattaagcgcttatagcataaacgttt 223  Q
    |||||||||||||||| ||||||||||  |||||||||||| ||||    
T  39505837 ctatttggataaacagctcaattaagcatttatagcataaatgttt 39505882  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 172 - 220
Target Start/End: Original strand, 33828520 - 33828568
Alignment:
Q  172 aaggccctatttggataaacagatcaattaagcgcttatagcataaacg 220  Q
    |||||||| ||||||||||||| | || |||| ||||||||||||||||    
T  33828520 aaggccctgtttggataaacagtttaactaagtgcttatagcataaacg 33828568  T

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Target: chr3 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 183 - 219
Target Start/End: Complemental strand, 33965677 - 33965641
Alignment:
Q  183 tggataaacagatcaattaagcgcttatagcataaac 219  Q
    ||||||||||| | |||||||||||||||||||||||    
T  33965677 tggataaacagcttaattaagcgcttatagcataaac 33965641  T

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