View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9308_low_77 (Length: 235)
Name: NF9308_low_77
Description: NF9308
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9308_low_77 |
 | |
|
| [»] chr6 (2 HSPs) |
| |
|
Alignment Details
Target: chr6 (Bit Score: 122; Significance: 1e-62; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 93 - 235
Target Start/End: Original strand, 8876552 - 8876696
Alignment:
| Q |
93 |
acctgaggttgttcccattgaaaagtctgtagccaaatctccagcaagaagcaaggatgatttagcacttgacaa--tgaaattaatgaggctattgagg |
190 |
Q |
| |
|
|||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||| |
|
|
| T |
8876552 |
acctgaggctgttcccattgaaaagtctgtaaccaaatctccagcaagaagcaaggatgatttagcacttgacaatctgaaattaatgaggccattgagg |
8876651 |
T |
|
| Q |
191 |
cacgcaatgcagcctttgctaggaaaagtgcataaccgaacaatt |
235 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8876652 |
cacgcaatgcagcctttgctaggaaaagtgcataaccgaacaatt |
8876696 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 11 - 88
Target Start/End: Original strand, 8876033 - 8876110
Alignment:
| Q |
11 |
caccaacaaccactaatcatgtctttatccacttcaaaaaacttccttataccgtggccttgtttgatttcatcttcc |
88 |
Q |
| |
|
||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
8876033 |
caccaacaaccactaattatgtcttcatccacttcaaaaaacttccttataccgtggcattgtttgatttcatcttcc |
8876110 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University