View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9308_low_8 (Length: 451)
Name: NF9308_low_8
Description: NF9308
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9308_low_8 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 362; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 362; E-Value: 0
Query Start/End: Original strand, 17 - 441
Target Start/End: Complemental strand, 10441129 - 10440712
Alignment:
| Q |
17 |
aaatgttagcagggattgaatcatggtcctccttcagggacttctttttcaaagatattgtcgaatatgactcatttactgataagtgggtaggtgctcg |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10441129 |
aaatgttagcagggattgaatcatggtcctccttcagggacttctttttcaaagatattgtcgaatatgactcatttactgataagtgggtaggtgctcg |
10441030 |
T |
|
| Q |
117 |
agcatagcggagtggctgtactgtattatagtagttaaatactgcattgtagtatgcagccctaactattgcaattgcttctctttaggttttgactcat |
216 |
Q |
| |
|
|||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10441029 |
agcatagcggagtgactggactgtattatagtagttaaatactgcattgtagtatgcagccctaactattgcaattgcttctctttaggttttgactcat |
10440930 |
T |
|
| Q |
217 |
tacctttttgttagttaacacattcttgagtatgactcatattcattgaaaactgggtacgcgtgtcgagtgtagtggagcggagcggagcgagtggaca |
316 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| | |||||||| |
|
|
| T |
10440929 |
tacctttttgttagttaacacattgttgagtatgactcat--tcattgaaaactgggtacgcgtgtcgagtgtagtggagcggagtg-----agtggaca |
10440837 |
T |
|
| Q |
317 |
ttagtatttaaacattggatcgtactttgtaaccctaagtattgtataatggaaaaacttcagccatcacttatgtctcagagatgtaggcacaattgac |
416 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
10440836 |
ttagtatttaaacattggatcgtactttgtaaccctaagtattgtataatggaaaaactacagccatcacttatgtgtcagagatgtaggcacaattgac |
10440737 |
T |
|
| Q |
417 |
taaactccattatcgattgtctgtg |
441 |
Q |
| |
|
||||||||| |||||||||| |||| |
|
|
| T |
10440736 |
taaactccactatcgattgtttgtg |
10440712 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University