View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9308_low_80 (Length: 229)

Name: NF9308_low_80
Description: NF9308
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9308_low_80
NF9308_low_80
[»] chr6 (1 HSPs)
chr6 (1-198)||(14163932-14164129)
[»] chr5 (1 HSPs)
chr5 (171-223)||(32703301-32703353)
[»] chr1 (2 HSPs)
chr1 (108-154)||(27976511-27976558)
chr1 (122-154)||(37473330-37473362)
[»] chr4 (2 HSPs)
chr4 (94-151)||(3070083-3070141)
chr4 (173-223)||(17822890-17822940)
[»] chr8 (2 HSPs)
chr8 (178-223)||(42622891-42622936)
chr8 (122-154)||(1058181-1058213)
[»] chr7 (1 HSPs)
chr7 (96-152)||(46078051-46078108)
[»] chr3 (1 HSPs)
chr3 (122-154)||(20880408-20880440)


Alignment Details
Target: chr6 (Bit Score: 182; Significance: 2e-98; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 1 - 198
Target Start/End: Original strand, 14163932 - 14164129
Alignment:
Q  1 cagttttaggttacaaattttacggttgtgtttggataaatagcttattatctgattatagcacaaacccttgtgtttcttttttcctaatataacacaa 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||    
T  14163932 cagttttaggttacaaattttacggttgtgtttggataaatagcttattagctgattatagcacaaacccttgtgtttattttttcctaatataacacaa 14164031  T
Q  101 acacttttcatgataatcctcatgtataagcttacataagatatttttatagcataaagttaattgttattgtatgctataagttattttcctaagct 198  Q
    |||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14164032 acacttatcatgataatccttatgtataagcttacataagatatttttatagcataaagttaattgttattgtatgctataagttattttcctaagct 14164129  T

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Target: chr5 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 171 - 223
Target Start/End: Complemental strand, 32703353 - 32703301
Alignment:
Q  171 tgtatgctataagttattttcctaagctctcttggagaagttataaaaataag 223  Q
    ||||||||||||||| ||||| |||||| ||| |||||| |||||||||||||    
T  32703353 tgtatgctataagttgttttcataagctatctaggagaatttataaaaataag 32703301  T

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Target: chr1 (Bit Score: 32; Significance: 0.000000005; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 108 - 154
Target Start/End: Original strand, 27976511 - 27976558
Alignment:
Q  108 tcatgataa-tcctcatgtataagcttacataagatatttttatagca 154  Q
    ||||||||| |||| ||||||||||||||||||| |||||||||||||    
T  27976511 tcatgataagtccttatgtataagcttacataagctatttttatagca 27976558  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 122 - 154
Target Start/End: Original strand, 37473330 - 37473362
Alignment:
Q  122 atgtataagcttacataagatatttttatagca 154  Q
    ||||||||||||||||||| |||||||||||||    
T  37473330 atgtataagcttacataagctatttttatagca 37473362  T

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Target: chr4 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 94 - 151
Target Start/End: Complemental strand, 3070141 - 3070083
Alignment:
Q  94 aacacaaacacttttcatgataatc-ctcatgtataagcttacataagatatttttata 151  Q
    |||||| |||||| ||||||||| | ||||| |||||||||||||||| ||||||||||    
T  3070141 aacacatacacttgtcatgataaacactcatatataagcttacataagttatttttata 3070083  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 173 - 223
Target Start/End: Complemental strand, 17822940 - 17822890
Alignment:
Q  173 tatgctataagttattttcctaagctctcttggagaagttataaaaataag 223  Q
    ||||||||||||| ||||| |||||| |||||||||| |||| ||||||||    
T  17822940 tatgctataagttgttttcataagctatcttggagaacttatgaaaataag 17822890  T

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Target: chr8 (Bit Score: 30; Significance: 0.00000008; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 178 - 223
Target Start/End: Original strand, 42622891 - 42622936
Alignment:
Q  178 tataagttattttcctaagctctcttggagaagttataaaaataag 223  Q
    |||||||| |||| ||||||| |||||||||| |||||||||||||    
T  42622891 tataagttgtttttctaagctatcttggagaatttataaaaataag 42622936  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 122 - 154
Target Start/End: Complemental strand, 1058213 - 1058181
Alignment:
Q  122 atgtataagcttacataagatatttttatagca 154  Q
    ||||||||||||||||||| |||||||||||||    
T  1058213 atgtataagcttacataagctatttttatagca 1058181  T

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Target: chr7 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 96 - 152
Target Start/End: Original strand, 46078051 - 46078108
Alignment:
Q  96 cacaaacacttttcatgataatc-ctcatgtataagcttacataagatatttttatag 152  Q
    ||||||||| | ||||||||| | || ||||||||||||||||||| |||||||||||    
T  46078051 cacaaacacatatcatgataagcgcttatgtataagcttacataagttatttttatag 46078108  T

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Target: chr3 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 122 - 154
Target Start/End: Original strand, 20880408 - 20880440
Alignment:
Q  122 atgtataagcttacataagatatttttatagca 154  Q
    ||||||||||||||||||| |||||||||||||    
T  20880408 atgtataagcttacataagctatttttatagca 20880440  T

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