View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9308_low_81 (Length: 229)
Name: NF9308_low_81
Description: NF9308
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9308_low_81 |
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Alignment Details
Target: chr5 (Bit Score: 198; Significance: 1e-108; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 7 - 224
Target Start/End: Original strand, 41230390 - 41230607
Alignment:
| Q |
7 |
aaaaggttctcatagttgaaaacaagttgttttccgtcgcagaactcttgcacaaacccaaacatggaagacgagagtggcctggttaataaaatgcagg |
106 |
Q |
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| T |
41230390 |
aaaaggctctcatagttgaaaacaagttgttttccgtcgcagaactcttgcacaaacccaaacatggaagacgagagtcgcctggttgataaaatgcagg |
41230489 |
T |
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| Q |
107 |
agttttctcagccgcaatgtgctgaagcatatccaagtgaaataaagacacaagaagttggcattcgtttagggcagacattggatcatgcaggacagtc |
206 |
Q |
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| T |
41230490 |
agttttctcagccacaatgtgctgaagcatatccaactgaaataaagacacaagaagttggcattcgtttagggcagacattggatcatgcaggacagtc |
41230589 |
T |
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| Q |
207 |
gaactggaggtaaatttc |
224 |
Q |
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| T |
41230590 |
gaactggaggtaaatttc |
41230607 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 66; Significance: 3e-29; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 46 - 179
Target Start/End: Original strand, 42413870 - 42414003
Alignment:
| Q |
46 |
cagaactcttgcacaaacccaaacatggaagacgagagtggcctggttaataaaatgcaggagttttctcagccgcaatgtgctgaagcatatccaagtg |
145 |
Q |
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|||| |||||| |||| ||||||||||||| ||||||||||||||| |||| ||||| || |||||||||| | ||||||| |||||||||||||||| |
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| T |
42413870 |
cagagctcttgtacaaggccaaacatggaagctgagagtggcctggttgataacatgcatgaattttctcagctgaaatgtgcggaagcatatccaagtg |
42413969 |
T |
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| Q |
146 |
aaataaagacacaagaagttggcattcgtttagg |
179 |
Q |
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| T |
42413970 |
aaataaagacacgagaacttgacattcatttagg |
42414003 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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