View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9308_low_85 (Length: 228)
Name: NF9308_low_85
Description: NF9308
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9308_low_85 |
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Alignment Details
Target: chr1 (Bit Score: 150; Significance: 2e-79; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 7 - 220
Target Start/End: Complemental strand, 20770596 - 20770382
Alignment:
| Q |
7 |
attgcaaactaaataatcaatttagtctctaaaatcaaacacattaaactctatgatacatgatattaaccgaacttttaacataatatacaaaattgaa |
106 |
Q |
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| T |
20770596 |
attgcaaactagataatcaatttagtctctaaaatcaaacacattaaactctatgatacatgatattaaccgaactttcaacataatatacaaaactgga |
20770497 |
T |
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| Q |
107 |
aatctttgatcgc-tcaatattagtctttttggataagtgaatttctacattaaatannnnnnncgaaaagattaatgtgatcaatgcttttcaatttca |
205 |
Q |
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||||||||||||| |||| | ||||| |||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
20770496 |
aatctttgatcgcatcaacaatagtccttttggattagtgaatttctacattaaatatttttttagaaaagattaatgtgatcaatgcttttcaatttca |
20770397 |
T |
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| Q |
206 |
agaattattttgaag |
220 |
Q |
| |
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||||||||||||||| |
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| T |
20770396 |
agaattattttgaag |
20770382 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 7 - 220
Target Start/End: Complemental strand, 21087225 - 21087011
Alignment:
| Q |
7 |
attgcaaactaaataatcaatttagtctctaaaatcaaacacattaaactctatgatacatgatattaaccgaacttttaacataatatacaaaattgaa |
106 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||| |||| |
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| T |
21087225 |
attgcaaactaaataatcaatttagtctctaaaatcaaacacattaaattctatgatacatgatattaaccgaactttcaacataatatacaaaactgaa |
21087126 |
T |
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| Q |
107 |
aatctttgatcgc-tcaatattagtctttttggataagtgaatttctacattaaatannnnnnncgaaaagattaatgtgatcaatgcttttcaatttca |
205 |
Q |
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||||||||||||| |||| ||||||| |||||||| | ||||||||||||||||||| ||||||||||||||||||||||| ||||||||||| |
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| T |
21087125 |
aatctttgatcgcatcaacattagtccttttggatcaatgaatttctacattaaatatttttttagaaaagattaatgtgatcaatgcatttcaatttca |
21087026 |
T |
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| Q |
206 |
agaattattttgaag |
220 |
Q |
| |
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||||||||||||||| |
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| T |
21087025 |
agaattattttgaag |
21087011 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 110; E-Value: 1e-55
Query Start/End: Original strand, 7 - 220
Target Start/End: Original strand, 21095929 - 21096147
Alignment:
| Q |
7 |
attgcaaactaaataatcaatttagtctctaaaatcaaacacattaaactctatgatacatgatattaaccgaacttttaacataatatacaaaattgaa |
106 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||| |||| |||| |
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| T |
21095929 |
attgcaaactaaataatcaatttagtctctaaaatcaaacacattaaactctatgatacatgatattggccgaactttcaacataatatataaaactgaa |
21096028 |
T |
|
| Q |
107 |
aat-----ctttgatcgc-tcaatattagtctttttggataagtgaatttctacattaaatannnnnnncgaaaagattaatgtgatcaatgcttttcaa |
200 |
Q |
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||| |||||||| | |||| |||||||||||||||| ||||||| | | ||||||| ||||||||||||||||||||||| ||||||| |
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| T |
21096029 |
aatctttgctttgatcacatcaacattagtctttttggatctatgaatttatgctttaaata-ttttttcgaaaagattaatgtgatcaatgtttttcaa |
21096127 |
T |
|
| Q |
201 |
tttcaagaattattttgaag |
220 |
Q |
| |
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|||||||||||||||||||| |
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| T |
21096128 |
tttcaagaattattttgaag |
21096147 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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