View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9308_low_88 (Length: 218)
Name: NF9308_low_88
Description: NF9308
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9308_low_88 |
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Alignment Details
Target: chr2 (Bit Score: 183; Significance: 4e-99; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 183; E-Value: 4e-99
Query Start/End: Original strand, 11 - 200
Target Start/End: Complemental strand, 44011532 - 44011342
Alignment:
| Q |
11 |
agcaaagggagttaatccaccatcagtaa-cctgttatacttcaatggtccttacttggctcttgctatcaaaacaggcattgtcacaggaatcctatct |
109 |
Q |
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| T |
44011532 |
agcaaagggagttaatccaccatcagtaaacctgttatacttcaatggtccttacttggctcttgctatcaaaacaggcattgtcacaggaatcctatct |
44011433 |
T |
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| Q |
110 |
ctcacagtaagcagaatcaaaacttgctacacttttctgtcacatattacatgttacatacttaaaaataatacaaaacttaggtcctact |
200 |
Q |
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| T |
44011432 |
ctcacagtaagcagaatcaaaacttgctacacttttctgtcacatattacatgttacatacttaaaaataatacaaaacttaggtcctact |
44011342 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 13 - 121
Target Start/End: Original strand, 3175753 - 3175862
Alignment:
| Q |
13 |
caaagggagttaatccaccatcagtaacc-tgttatacttcaatggtccttacttggctcttgctatcaaaacaggcattgtcacaggaatcctatctct |
111 |
Q |
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|||||||| |||||||||||||| || | |||||||||||| |||||| | |||||||||||||||||||| || ||||||| |||||| | ||||| |
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| T |
3175753 |
caaagggacttaatccaccatcatcaaacatgttatacttcagtggtccacatttggctcttgctatcaaaactggacttgtcactggaatcttgtctct |
3175852 |
T |
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| Q |
112 |
cacagtaagc |
121 |
Q |
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| T |
3175853 |
cactgtaagc |
3175862 |
T |
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